(Last update: November 15, 2004)
Table 1d:
Structures for which the helical axis is best described by a
double-kink line.
Sigma2 of a double-kink line
is significantly smaller (> 0.2) than for the next best model(s).
The structures are listed by the goodness of fit
sigma2(double-kink line) (s(2)).
Number of structures: 119
|
PDB  |
NDB |
IMB Jena
Image Library |
bp |
molecule
type |
method |
s(2) |
a/a1 |
a2 |
a1+a2 |
o |
l1 |
l2 |
l3 |
---|
1a35 |
pde0143 |
E |
H |
B |
22 |
prot-nuc |
diff |
0.061 |
11 |
9 |
20 |
157 |
6 |
7 |
9 |
1glu |
pdrc01 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.078 |
13 |
12 |
25 |
119 |
5 |
4 |
8 |
1a31 |
pde0142 |
E |
H |
B |
22 |
prot-nuc |
diff |
0.096 |
9 |
8 |
17 |
172 |
6 |
7 |
9 |
1mjo |
pd0246 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.112 |
19 |
17 |
36 |
-69 |
5 |
8 |
5 |
1dfm |
pd0101 |
E |
H |
B |
14 |
prot-nuc |
diff |
0.113 |
13 |
13 |
26 |
-122 |
5 |
4 |
5 |
1k9l |
------ |
E |
H |
B |
14 |
nuc |
NMR |
0.122 |
16 |
16 |
32 |
94 |
4 |
6 |
4 |
1mj2 |
pd0173 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.124 |
20 |
15 |
35 |
-69 |
5 |
8 |
5 |
1d2i |
pd0153 |
E |
H |
B |
14 |
prot-nuc |
diff |
0.129 |
13 |
16 |
29 |
-130 |
5 |
4 |
5 |
1hcq |
pdrc03 |
E |
H |
B |
17 |
prot-nuc |
diff |
0.133 |
13 |
15 |
28 |
132 |
6 |
6 |
5 |
405d |
ar0002 |
E |
H |
B |
16 |
nuc |
diff |
0.134 |
20 |
18 |
38 |
177 |
5 |
6 |
5 |
1mjq |
pd0248 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.134 |
19 |
21 |
40 |
-42 |
5 |
8 |
5 |
1kfo |
ar0039 |
E |
H |
B |
18 |
nuc |
diff |
0.135 |
29 |
29 |
58 |
165 |
6 |
6 |
6 |
1dgc |
pdt007 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.138 |
20 |
20 |
40 |
112 |
7 |
4 |
7 |
1je8 |
pd0219 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.138 |
32 |
31 |
63 |
-71 |
6 |
8 |
6 |
1egw |
pd0121 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.139 |
16 |
16 |
32 |
-104 |
5 |
6 |
5 |
1rcs |
------ |
E |
H |
B |
20 |
prot-nuc |
NMR |
0.148 |
20 |
29 |
49 |
-32 |
6 |
8 |
6 |
3hdd |
pd0016 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.151 |
10 |
15 |
25 |
-173 |
7 |
7 |
6 |
2cgp |
pdt049 |
E |
H |
B |
26 |
prot-nuc |
diff |
0.153 |
37 |
37 |
74 |
-44 |
8 |
10 |
8 |
1cma |
pdr008 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.154 |
20 |
21 |
41 |
-78 |
6 |
7 |
5 |
1bdz |
------ |
E |
H |
B |
14 |
nuc |
NMR |
0.157 |
22 |
22 |
44 |
-55 |
4 |
6 |
4 |
1nh2 |
pd0369 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.161 |
25 |
38 |
63 |
70 |
6 |
4 |
6 |
1mdm |
pd0338 |
E |
H |
B |
25 |
prot-nuc |
diff |
0.162 |
13 |
16 |
29 |
-152 |
8 |
4 |
13 |
2or1 |
pdr004 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.176 |
21 |
18 |
39 |
-48 |
6 |
8 |
5 |
1ubd |
pdt038 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.179 |
16 |
10 |
26 |
176 |
7 |
7 |
6 |
1d5y |
pd0078 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.185 |
10 |
10 |
20 |
-119 |
6 |
8 |
6 |
1kbd |
------ |
E |
H |
B |
16 |
prot |
NMR |
0.186 |
10 |
17 |
27 |
107 |
5 |
5 |
6 |
1per |
pdr015 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.188 |
22 |
19 |
41 |
-58 |
6 |
8 |
5 |
2drp |
pdt011 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.191 |
24 |
14 |
38 |
-125 |
8 |
5 |
5 |
1lb2 |
pd0306 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.191 |
19 |
31 |
50 |
-32 |
11 |
4 |
5 |
1b3t |
pd0024 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.196 |
25 |
24 |
49 |
-109 |
7 |
4 |
7 |
1ytf |
pdt036 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.204 |
22 |
40 |
62 |
59 |
6 |
4 |
6 |
1l1m |
------ |
E |
H |
B |
23 |
prot-nuc |
NMR |
0.217 |
51 |
41 |
92 |
-119 |
10 |
2 |
11 |
1h8a |
pd0290 |
E |
H |
B |
25 |
prot-nuc |
diff |
0.218 |
15 |
14 |
29 |
101 |
10 |
8 |
7 |
1bn9 |
------ |
E |
H |
B |
15 |
nuc |
NMR |
0.221 |
18 |
17 |
35 |
-99 |
7 |
4 |
4 |
1dh3 |
pd0102 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.226 |
17 |
14 |
31 |
134 |
8 |
4 |
8 |
2kbd |
------ |
E |
H |
B |
16 |
nuc |
NMR |
0.231 |
30 |
48 |
78 |
95 |
6 |
4 |
6 |
1l3l |
pd0298 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.236 |
19 |
28 |
47 |
-80 |
7 |
6 |
7 |
1hlv |
pd0192 |
E |
H |
B |
21 |
prot-nuc |
diff |
0.237 |
16 |
35 |
51 |
33 |
8 |
7 |
6 |
1bvo |
------ |
E |
H |
B |
15 |
prot-nuc |
diff |
0.240 |
14 |
14 |
28 |
-126 |
5 |
5 |
5 |
1ckt |
pd0051 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.240 |
24 |
38 |
62 |
53 |
6 |
3 |
7 |
1hw2 |
pd0199 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.246 |
20 |
13 |
33 |
-148 |
8 |
4 |
6 |
1hdd |
pdt004 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.247 |
10 |
16 |
26 |
168 |
8 |
7 |
5 |
1rpe |
pdr011 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.250 |
22 |
20 |
42 |
-58 |
6 |
8 |
5 |
1io4 |
pd0198 |
E |
H |
B |
25 |
prot-nuc |
diff |
0.277 |
13 |
7 |
20 |
100 |
8 |
8 |
9 |
1h0m |
------ |
E |
H |
B |
18 |
prot-nuc |
diff |
0.279 |
26 |
13 |
39 |
-64 |
6 |
6 |
6 |
1hwt |
pd0089 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.286 |
26 |
17 |
43 |
-165 |
7 |
8 |
5 |
1cit |
pd0046 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.287 |
24 |
19 |
43 |
129 |
5 |
6 |
5 |
1akh |
pdr049 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.289 |
20 |
38 |
58 |
-51 |
6 |
6 |
7 |
1h89 |
pd0289 |
E |
H |
B |
25 |
prot-nuc |
diff |
0.294 |
17 |
10 |
27 |
102 |
8 |
9 |
8 |
1b72 |
pd0075 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.295 |
18 |
22 |
40 |
-177 |
10 |
4 |
5 |
4kbd |
------ |
E |
H |
B |
16 |
nuc |
NMR |
0.298 |
21 |
34 |
55 |
103 |
5 |
5 |
6 |
2ram |
pdr051 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.303 |
20 |
20 |
40 |
166 |
10 |
6 |
4 |
1dmu |
pd0108 |
E |
H |
B |
17 |
prot-nuc |
diff |
0.304 |
18 |
15 |
33 |
82 |
7 |
4 |
6 |
1o3t |
pd0401 |
E |
H |
B |
13 |
prot-nuc |
diff |
0.306 |
36 |
12 |
48 |
51 |
3 |
4 |
6 |
1qn4 |
pd0154 |
E |
H |
B |
14 |
prot-nuc |
diff |
0.307 |
41 |
32 |
73 |
48 |
5 |
4 |
5 |
1yrn |
pdt028 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.339 |
29 |
33 |
62 |
-68 |
7 |
6 |
5 |
1oct |
pdt019 |
E |
H |
B |
14 |
prot-nuc |
diff |
0.340 |
18 |
27 |
45 |
-63 |
5 |
5 |
4 |
1h88 |
pd0288 |
E |
H |
B |
25 |
prot-nuc |
diff |
0.341 |
24 |
13 |
37 |
161 |
8 |
10 |
7 |
2dnj |
pde006 |
E |
H |
B |
14 |
prot-nuc |
diff |
0.351 |
20 |
20 |
40 |
154 |
5 |
4 |
5 |
1h6f |
pd0311 |
E |
H |
B |
22 |
prot-nuc |
diff |
0.366 |
13 |
14 |
27 |
-103 |
4 |
14 |
4 |
1dp7 |
pd0111 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.366 |
24 |
24 |
48 |
122 |
5 |
6 |
5 |
1le8 |
pd0308 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.366 |
30 |
31 |
61 |
-51 |
6 |
6 |
7 |
1a6y |
pd0008 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.368 |
19 |
13 |
32 |
-166 |
9 |
4 |
7 |
1qne |
pd0163 |
E |
H |
B |
14 |
prot-nuc |
diff |
0.376 |
49 |
37 |
86 |
54 |
5 |
4 |
5 |
1au7 |
pdr034 |
E |
H |
B |
24 |
prot-nuc |
diff |
0.377 |
22 |
21 |
43 |
147 |
4 |
14 |
6 |
1ysa |
pdt002 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.385 |
16 |
33 |
49 |
-176 |
6 |
5 |
5 |
1lmb |
pdr010 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.388 |
18 |
18 |
36 |
-16 |
4 |
11 |
4 |
1cgp |
pdr006 |
E |
H |
B |
30 |
prot-nuc |
diff |
0.389 |
48 |
44 |
92 |
-36 |
9 |
11 |
10 |
1tc3 |
pde0128 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.407 |
34 |
32 |
66 |
54 |
4 |
8 |
7 |
1lli |
pdr016 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.413 |
18 |
19 |
37 |
-3 |
4 |
11 |
4 |
1bl0 |
pdr056 |
E |
H |
B |
22 |
prot-nuc |
diff |
0.428 |
29 |
27 |
56 |
-73 |
8 |
6 |
8 |
2hmi |
pd0005 |
E |
H |
B |
18 |
prot-nuc |
diff |
0.432 |
24 |
17 |
41 |
44 |
5 |
5 |
8 |
1nk3 |
------ |
E |
H |
B |
14 |
prot-nuc |
NMR |
0.446 |
28 |
19 |
47 |
162 |
3 |
4 |
7 |
2rve |
pde002 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.454 |
43 |
40 |
83 |
126 |
6 |
3 |
7 |
1efa |
pd0118 |
E |
H |
B |
17 |
prot-nuc |
diff |
0.465 |
40 |
20 |
60 |
67 |
7 |
6 |
4 |
1owg |
pd0407 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.468 |
28 |
67 |
95 |
46 |
8 |
4 |
8 |
1fok |
pde0127 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.483 |
28 |
28 |
56 |
-125 |
4 |
10 |
5 |
433d |
ar0008 |
E |
H |
B |
14 |
nuc |
diff |
0.488 |
31 |
30 |
61 |
176 |
7 |
2 |
4 |
2bop |
pdv001 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.505 |
26 |
26 |
52 |
-82 |
6 |
4 |
6 |
1jfi |
pd0221 |
E |
H |
B |
17 |
prot-nuc |
diff |
0.508 |
41 |
39 |
80 |
68 |
7 |
4 |
6 |
1jj4 |
pd0227 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.518 |
32 |
33 |
65 |
-99 |
6 |
4 |
6 |
1c7u |
------ |
E |
H |
B |
20 |
prot-nuc |
NMR |
0.524 |
27 |
27 |
54 |
118 |
5 |
10 |
5 |
1run |
pdr024 |
E |
H |
B |
30 |
prot-nuc |
diff |
0.527 |
48 |
42 |
90 |
-34 |
10 |
10 |
10 |
1cdw |
pdt034 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.533 |
56 |
48 |
104 |
55 |
6 |
5 |
5 |
1ngm |
pd0368 |
E |
H |
B |
19 |
prot-nuc |
diff |
0.573 |
57 |
38 |
95 |
62 |
5 |
4 |
10 |
1ouz |
pd0405 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.574 |
25 |
67 |
92 |
42 |
8 |
4 |
8 |
1owf |
pd0406 |
E |
H |
B |
20 |
prot-nuc |
diff |
0.579 |
24 |
65 |
89 |
40 |
8 |
4 |
8 |
1gdt |
pde0115 |
E |
H |
B |
34 |
prot-nuc |
diff |
0.588 |
44 |
31 |
75 |
94 |
15 |
4 |
15 |
1iaw |
pd0207 |
E |
H |
B |
16 |
prot-nuc |
diff |
0.590 |
52 |
21 |
73 |
124 |
8 |
3 |
5 |
1ir5 |
------ |
E |
H |
B |
17 |
nuc |
NMR |
0.598 |
35 |
21 |
56 |
144 |
3 |
5 |
9 |
1exj |
pd0146 |
E |
H |
B |
21 |
prot-nuc |
diff |
0.605 |
16 |
41 |
57 |
-175 |
5 |
5 |
11 |
1ais |
pdr031 |
E |
H |
B |
17 |
prot-nuc |
diff |
0.617 |
49 |
29 |
78 |
82 |
7 |
6 |
4 |
1nk2 |
------ |
E |
H |
B |
16 |
prot-nuc |
NMR |
0.646 |
32 |
27 |
59 |
134 |
9 |
3 |
4 |
1ewq |
pd0142 |
E |
H |
B |
21 |
prot-nuc |
diff |
0.660 |
27 |
40 |
67 |
-47 |
11 |
2 |
8 |
1lfu |
------ |
E |
H |
B |
14 |
prot-nuc |
NMR |
0.662 |
24 |
16 |
40 |
178 |
5 |
5 |
4 |
1ouq |
pd0404 |
E |
H |
B |
21 |
prot-nuc |
diff |
0.663 |
35 |
28 |
63 |
36 |
5 |
6 |
10 |
1d3u |
pd0070 |
E |
H |
B |
23 |
prot-nuc |
diff |
0.683 |
58 |
44 |
102 |
71 |
11 |
5 |
7 |
1tro |
pdr009 |
E |
H |
B |
37 |
prot-nuc |
diff |
0.717 |
15 |
16 |
31 |
-84 |
9 |
20 |
8 |
2stt |
------ |
E |
H |
B |
17 |
prot-nuc |
NMR |
0.722 |
17 |
37 |
54 |
94 |
4 |
4 |
9 |
1ic8 |
pd0208 |
E |
H |
B |
21 |
prot-nuc |
diff |
0.737 |
18 |
48 |
66 |
151 |
13 |
4 |
4 |
1co0 |
------ |
E |
H |
B |
20 |
prot-nuc |
NMR |
0.772 |
16 |
38 |
54 |
153 |
7 |
6 |
7 |
1jwl |
pd0250 |
E |
H |
B |
14 |
prot-nuc |
diff |
0.786 |
40 |
31 |
71 |
-147 |
6 |
4 |
4 |
1gt0 |
------ |
E |
H |
B |
23 |
prot-nuc |
diff |
0.821 |
55 |
17 |
72 |
-78 |
5 |
11 |
7 |
1c9b |
pd0112 |
E |
H |
B |
17 |
prot-nuc |
diff |
0.914 |
43 |
44 |
87 |
45 |
6 |
5 |
6 |
1n14 |
------ |
E |
H |
B |
13 |
nuc |
NMR |
0.990 |
37 |
38 |
75 |
160 |
4 |
5 |
4 |
1xbr |
pdt045 |
E |
H |
B |
24 |
prot-nuc |
diff |
1.028 |
20 |
10 |
30 |
167 |
5 |
6 |
12 |
1trr |
pdr013 |
E |
H |
B |
32 |
prot-nuc |
diff |
1.070 |
19 |
20 |
39 |
-109 |
11 |
9 |
12 |
1rpd |
------ |
E |
H |
B |
42 |
prot-nuc |
model |
1.081 |
24 |
27 |
51 |
14 |
9 |
21 |
12 |
1wai |
------ |
E |
H |
B |
25 |
prot-nuc |
model |
1.153 |
15 |
8 |
23 |
-115 |
5 |
7 |
12 |
1lws |
pd0319 |
E |
H |
B |
34 |
prot-nuc |
diff |
1.163 |
56 |
17 |
73 |
-72 |
12 |
9 |
13 |
1ruo |
pdr025 |
E |
H |
B |
30 |
prot-nuc |
diff |
1.164 |
46 |
47 |
93 |
-39 |
10 |
10 |
10 |
1f5t |
pd0170 |
E |
H |
B |
41 |
prot-nuc |
diff |
1.251 |
7 |
9 |
16 |
66 |
12 |
15 |
13 |
1ddn |
pd0004 |
E |
H |
B |
32 |
prot-nuc |
diff |
1.259 |
19 |
19 |
38 |
23 |
5 |
19 |
8 |
2gli |
pdt008 |
E |
H |
B |
20 |
prot-nuc |
diff |
1.264 |
31 |
41 |
72 |
136 |
8 |
3 |
9 |
1c0w |
pd0069 |
E |
H |
B |
21 |
prot-nuc |
diff |
1.309 |
30 |
28 |
58 |
169 |
9 |
3 |
9 |
1lwt |
pd0320 |
E |
H |
B |
36 |
prot-nuc |
diff |
1.483 |
52 |
19 |
71 |
-49 |
11 |
10 |
15 |
1mnm |
pdr036 |
E |
H |
B |
25 |
prot-nuc |
diff |
1.552 |
40 |
24 |
64 |
-59 |
10 |
4 |
11 |
1an4 |
pdt027 |
E |
H |
B |
20 |
prot-nuc |
diff |
1.782 |
25 |
23 |
48 |
168 |
6 |
6 |
8 |
1k6o |
pd0258 |
E |
H |
B |
23 |
prot-nuc |
diff |
1.853 |
21 |
57 |
78 |
-160 |
4 |
10 |
9 |
Abbreviations