1D5Y | PD0078 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA

Authors :   H. J. Kwon, M. H. J. Bennik, B. Demple, T. Ellenberger

Date :   12 Oct 99 (Deposition) - 24 Apr 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D,M,N,O,P
Biol. Unit 1: A,B,M,N  (1x)
Biol. Unit 2: C,D,O,P  (1x)

Keywords :   Protein-Dna Complex, Rob Transcription Factor, Dna, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. J. Kwon, M. H. Bennik, B. Demple, T. Ellenberger
Crystal Structure Of The Escherichia Coli Rob Transcription Factor In Complex With Dna.
Nat. Struct. Biol. V. 7 424 2000
PubMed-ID: 10802742 | Reference-DOI: 10.1038/75213
(for further references see the PDB file header)

*Molecule 1 - DNA (5'- D(TPGPAPCPAPGPCPAPCPTPGPAPAPTPGPTPCPAPAP APG)-3')**
	Chains	:	M, O
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 2 - DNA (5'- D(APCPTPTPTPGPAPCPAPTPTPCPAPGPTPGPCPTPGP TPC)-3')**
	Chains	:	N, P
	Engineered	:	YES
	Synthetic	:	YES

Molecule 3 - ROB TRANSCRIPTION FACTOR
	Chains	:	A, D, C, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 3-289, KLAAA EXTENSION AFTER RESIDUE 289
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	RIGHT ORIGIN-BINDING PROTEIN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	M	N	O	P
Biological Unit 1 (1x)	:	A	B			M	N
Biological Unit 2 (1x)	:			C	D			O	P

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1D5Y)

(no "Site" information available for 1D5Y)

(no "SS Bond" information available for 1D5Y)

(no "Cis Peptide Bond" information available for 1D5Y)

(no "SAP(SNP)/Variant" information available for 1D5Y)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ARAC_FAMILY_2	PS01124	Bacterial regulatory proteins, araC family DNA-binding domain profile.	ROB_ECOLI	8-106	4	A:8-106 B:8-106 C:8-106 D:8-106
2	HTH_ARAC_FAMILY_1	PS00041	Bacterial regulatory proteins, araC family signature.	ROB_ECOLI	55-100	4	A:55-100 B:55-100 C:55-100 D:55-100

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ARAC_FAMILY_2	PS01124	Bacterial regulatory proteins, araC family DNA-binding domain profile.	ROB_ECOLI	8-106	2	A:8-106 B:8-106 - -
2	HTH_ARAC_FAMILY_1	PS00041	Bacterial regulatory proteins, araC family signature.	ROB_ECOLI	55-100	2	A:55-100 B:55-100 - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ARAC_FAMILY_2	PS01124	Bacterial regulatory proteins, araC family DNA-binding domain profile.	ROB_ECOLI	8-106	2	- - C:8-106 D:8-106
2	HTH_ARAC_FAMILY_1	PS00041	Bacterial regulatory proteins, araC family signature.	ROB_ECOLI	55-100	2	- - C:55-100 D:55-100

(no "Exon" information available for 1D5Y)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:288
 aligned with ROB_ECOLI | P0ACI0 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:292
                                                                                                                                                                                                                                                                                                                        289     
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282      |  -  
            ROB_ECOLI     3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR-----   -
               SCOP domains d1d5ya1 A:3-56                                        d1d5ya2 A:57-121 Rob transcription factor, N-terminal domain     d1d5ya3 A:122-294 Rob transcription factor, C-terminal domain                                                                                                                 SCOP domains
               CATH domains 1d5yA01 A:3-55 Homeodomain-like                      1d5yA02 A:56-121 Homeodomain-like                                 1d5yA03 A:122-294 Multidrug-efflux Transporter 1 Regulator Bmrr; Chain                                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.......hhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhh..ee.................eeeeee..eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.......eeeeeeeeeehhhhhhhh...eeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..ee....eeeee.hhhh----....eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----HTH_ARAC_FAMILY_2  PDB: A:8-106 UniProt: 8-106                                                     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------HTH_ARAC_FAMILY_1  PDB: A:55-100              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d5y A   3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAED----DRPINLRCELLIPIRRKLAAA 294
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262      |  - |     282       292  
                                                                                                                                                                                                                                                                                                    269  274

Chain B from PDB  Type:PROTEIN  Length:288
 aligned with ROB_ECOLI | P0ACI0 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:292
                                                                                                                                                                                                                                                                                                                        289     
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282      |  -  
            ROB_ECOLI     3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR-----   -
               SCOP domains d1d5yb1 B:3-56                                        d1d5yb2 B:57-121 Rob transcription factor, N-terminal domain     d1d5yb3 B:122-294 Rob transcription factor, C-terminal domain                                                                                                                 SCOP domains
               CATH domains 1d5yB01 B:3-55 Homeodomain-like                      1d5yB02 B:56-121 Homeodomain-like                                 1d5yB03 B:122-293 Multidrug-efflux Transporter 1 Regulator Bmrr; Chain                                                                                                      - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.................hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhh..ee................eeeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh........eeeeeeeee.......eeeeeeeeee...........eeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..ee....eeeee.hhhh----....eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----HTH_ARAC_FAMILY_2  PDB: B:8-106 UniProt: 8-106                                                     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------HTH_ARAC_FAMILY_1  PDB: B:55-100              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d5y B   3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAED----DRPINLRCELLIPIRRKLAAA 294
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262      |  - |     282       292  
                                                                                                                                                                                                                                                                                                    269  274

Chain C from PDB  Type:PROTEIN  Length:288
 aligned with ROB_ECOLI | P0ACI0 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:292
                                                                                                                                                                                                                                                                                                                        289     
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282      |  -  
            ROB_ECOLI     3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR-----   -
               SCOP domains d1d5yc1 C:3-56                                        d1d5yc2 C:57-121 Rob transcription factor, N-terminal domain     d1d5yc3 C:122-294 Rob transcription factor, C-terminal domain                                                                                                                 SCOP domains
               CATH domains 1d5yC01 C:3-55 Homeodomain-like                      1d5yC02 C:56-121 Homeodomain-like                                 1d5yC03 C:122-293 Multidrug-efflux Transporter 1 Regulator Bmrr; Chain                                                                                                      - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.......hhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhh..ee...................eeee..eeeeeeeee......hhhhhhhhhhhhhhhhhh.........eeeeeeeee.......eeeeeeeeee...........eeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhhh.ee....eeeee.....----....eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----HTH_ARAC_FAMILY_2  PDB: C:8-106 UniProt: 8-106                                                     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------HTH_ARAC_FAMILY_1  PDB: C:55-100              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d5y C   3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAED----DRPINLRCELLIPIRRKLAAA 294
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262      |  - |     282       292  
                                                                                                                                                                                                                                                                                                    269  274

Chain D from PDB  Type:PROTEIN  Length:288
 aligned with ROB_ECOLI | P0ACI0 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:292
                                                                                                                                                                                                                                                                                                                        289     
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282      |  -  
            ROB_ECOLI     3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR-----   -
               SCOP domains d1d5yd1 D:3-56                                        d1d5yd2 D:57-121 Rob transcription factor, N-terminal domain     d1d5yd3 D:122-294 Rob transcription factor, C-terminal domain                                                                                                                 SCOP domains
               CATH domains 1d5yD01 D:3-55 Homeodomain-like                      1d5yD02 D:56-121 Homeodomain-like                                 1d5yD03 D:122-293 Multidrug-efflux Transporter 1 Regulator Bmrr; Chain                                                                                                      - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhh....................eeeeeee..eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh........eeeeeeeee.......eeeeeeeeeehhhhhhhh...eeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhh........eeeee.hhhh----....eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----HTH_ARAC_FAMILY_2  PDB: D:8-106 UniProt: 8-106                                                     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------HTH_ARAC_FAMILY_1  PDB: D:55-100              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d5y D   3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAED----DRPINLRCELLIPIRRKLAAA 294
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262      |  - |     282       292  
                                                                                                                                                                                                                                                                                                    269  274

Chain M from PDB  Type:DNA  Length:21
                                                     
                 1d5y M   1 TGACAGCACTGAATGTCAAAG  21
                                    10        20

Chain N from PDB  Type:DNA  Length:21
                                                     
                 1d5y N   1 ACTTTGACATTCAGTGCTGTC  21
                                    10        20

Chain O from PDB  Type:DNA  Length:21
                                                     
                 1d5y O   1 TGACAGCACTGAATGTCAAAG  21
                                    10        20

Chain P from PDB  Type:DNA  Length:21
                                                     
                 1d5y P   1 ACTTTGACATTCAGTGCTGTC  21
                                    10        20

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: DNA/RNA-binding 3-helical bundle (1299)

Superfamily: Homeodomain-like (373)

Family: AraC type transcriptional activator (2)

Protein domain: Rob transcription factor, N-terminal domain (1)

Escherichia coli [TaxId: 562] (1)

1a	d1d5ya1	A:3-56
1b	d1d5ya2	A:57-121
1c	d1d5yb1	B:3-56
1d	d1d5yb2	B:57-121
1e	d1d5yc1	C:3-56
1f	d1d5yc2	C:57-121
1g	d1d5yd1	D:3-56
1h	d1d5yd2	D:57-121

Class: Alpha and beta proteins (a+b) (23004)

Fold: Probable bacterial effector-binding domain (17)

Superfamily: Probable bacterial effector-binding domain (17)

Family: Rob transcription factor, C-terminal domain (1)

Protein domain: Rob transcription factor, C-terminal domain (1)

Escherichia coli [TaxId: 562] (1)

2a	d1d5ya3	A:122-294
2b	d1d5yb3	B:122-294
2c	d1d5yc3	C:122-294
2d	d1d5yd3	D:122-294

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A (14)

Homologous Superfamily: Multidrug-efflux Transporter 1 Regulator Bmrr; Chain (14)

[unclassified] (5)

1a	1d5yB03	B:122-293
1b	1d5yC03	C:122-293
1c	1d5yD03	D:122-293
1d	1d5yA03	A:122-294

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Arc Repressor Mutant, subunit A (1030)

Homologous Superfamily: Homeodomain-like (288)

[unclassified] (65)

2a	1d5yA01	A:3-55
2b	1d5yB01	B:3-55
2c	1d5yC01	C:3-55
2d	1d5yD01	D:3-55
2e	1d5yA02	A:56-121
2f	1d5yB02	B:56-121
2g	1d5yC02	C:56-121
2h	1d5yD02	D:56-121

(no "Pfam Domain" information available for 1D5Y)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ROB_ECOLI | P0ACI0)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000987	core promoter proximal region sequence-specific DNA binding	Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to the core promoter. The transcribed region might be described as a gene, cistron, or operon.
	GO:0019172	glyoxalase III activity	Catalysis of the reaction: methylglyoxal + H2O = D-lactate.
	GO:0043565	sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into D-lactate via the intermediate S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1d5y)

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(no "Sites" information available for 1d5y)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1d5y)

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	1d5y
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Description

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Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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