1HWT | PD0089 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN

Authors :   D. A. King, L. Zhang, L. Guarente, R. Marmorstein

Date :   17 Sep 98 (Deposition) - 10 Nov 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)

Keywords :   Transcription Factor, Asymmetry, Gal4, Complex Activator/Dna, Gene Regulation/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. A. King, L. Zhang, L. Guarente, R. Marmorstein
Structure Of A Hap1-Dna Complex Reveals Dramatically Asymmetric Dna Binding By A Homodimeric Protein.
Nat. Struct. Biol. V. 6 64 1999
PubMed-ID: 9886294 | Reference-DOI: 10.1038/4940
(for further references see the PDB file header)

*Molecule 1 - DNA (5'- D(GPCPGPCPTPAPTPTPAPTPCPGPCPTPAPTPTPAPGP C)-3')*
	Chains	:	A, E
	Engineered	:	YES
	Fragment	:	UPSTREAM ACTIVATION SEQUENCE
	Other Details	:	SEQUENCE FROM SACCHAROMYCES CEREVISIAE
	Synonym	:	UAS CYC7
	Synthetic	:	YES

*Molecule 2 - DNA (5'- D(GPCPTPAPAPTPAPGPCPGPAPTPAPAPTPAPGPCPGP C)-3')*
	Chains	:	B, F
	Engineered	:	YES
	Fragment	:	UPSTREAM ACTIVATION SEQUENCE
	Other Details	:	SEQUENCE FROM SACCHAROMYCES CEREVISIAE
	Synonym	:	UAS CYC7
	Synthetic	:	YES

Molecule 3 - PROTEIN (HEME ACTIVATOR PROTEIN)
	Chains	:	C, D, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PRSETA
	Expression System Strain	:	BL21 LYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	LAC
	Fragment	:	DNA BINDING DOMAIN
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Strain	:	BWG-1-7A-DCYC1
	Synonym	:	HAP1, CYP1 ACTIVATORY PROTEIN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 9)

No.	Name	Count	Type	Full Name
1	ZN	9	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS C:64 , CYS C:67 , CYS C:74 , CYS C:81 , ZN C:137	BINDING SITE FOR RESIDUE ZN C 136
02	AC2	SOFTWARE	CYS C:64 , CYS C:81 , CYS C:84 , CYS C:93 , ZN C:136	BINDING SITE FOR RESIDUE ZN C 137
03	AC3	SOFTWARE	CYS D:64 , CYS D:67 , CYS D:74 , CYS D:81 , ZN D:137	BINDING SITE FOR RESIDUE ZN D 136
04	AC4	SOFTWARE	CYS D:64 , CYS D:81 , CYS D:84 , CYS D:93 , ZN D:136	BINDING SITE FOR RESIDUE ZN D 137
05	AC5	SOFTWARE	CYS G:64 , CYS G:67 , CYS G:74 , CYS G:81 , ZN G:137	BINDING SITE FOR RESIDUE ZN G 136
06	AC6	SOFTWARE	CYS G:64 , CYS G:81 , CYS G:84 , CYS G:93 , ZN G:136	BINDING SITE FOR RESIDUE ZN G 137
07	AC7	SOFTWARE	CYS H:64 , CYS H:67 , CYS H:74 , CYS H:81 , ZN H:137	BINDING SITE FOR RESIDUE ZN H 136
08	AC8	SOFTWARE	CYS H:64 , CYS H:81 , CYS H:84 , CYS H:93 , ZN H:136	BINDING SITE FOR RESIDUE ZN H 137
09	AC9	SOFTWARE	HIS D:80 , HIS D:91 , HIS H:80 , HIS H:91	BINDING SITE FOR RESIDUE ZN D 138
10	ZN1	UNKNOWN	CYS C:64 , CYS C:67 , CYS C:74 , CYS C:81 , CYS C:84 , CYS C:93	NULL
11	ZN2	UNKNOWN	CYS D:64 , CYS D:67 , CYS D:74 , CYS D:81 , CYS D:84 , CYS D:93	NULL
12	ZN3	UNKNOWN	CYS G:64 , CYS G:67 , CYS G:74 , CYS G:81 , CYS G:84 , CYS G:93	NULL
13	ZN4	UNKNOWN	CYS H:64 , CYS H:67 , CYS H:74 , CYS H:81 , CYS H:84 , CYS H:93	NULL
14	ZN5	UNKNOWN	HIS H:80 , HIS H:91 , HIS D:91 , HIS D:80	NULL

(no "SS Bond" information available for 1HWT)

Asymmetric Unit

No.	Residues
1	Arg C:78	-	Pro C:79
2	Arg D:78	-	Pro D:79
3	Arg G:78	-	Pro G:79
4	Arg H:78	-	Pro H:79

(no "SAP(SNP)/Variant" information available for 1HWT)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZN2_CY6_FUNGAL_1	PS00463	Zn(2)-C6 fungal-type DNA-binding domain signature.	HAP1_YEASK	63-93	4	C:63-93 D:63-93 G:63-93 H:63-93
				HAP1_YEAST	63-93	4	C:63-93 D:63-93 G:63-93 H:63-93
				HAP1_YEASX	63-93	4	C:63-93 D:63-93 G:63-93 H:63-93
2	ZN2_CY6_FUNGAL_2	PS50048	Zn(2)-C6 fungal-type DNA-binding domain profile.	HAP1_YEASK	63-95	4	C:63-95 D:63-95 G:63-95 H:63-95
				HAP1_YEAST	63-95	4	C:63-95 D:63-95 G:63-95 H:63-95
				HAP1_YEASX	63-95	4	C:63-95 D:63-95 G:63-95 H:63-95

Biological Unit 1 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZN2_CY6_FUNGAL_1	PS00463	Zn(2)-C6 fungal-type DNA-binding domain signature.	HAP1_YEASK	63-93	2	C:63-93 D:63-93 - -
				HAP1_YEAST	63-93	2	C:63-93 D:63-93 - -
				HAP1_YEASX	63-93	2	C:63-93 D:63-93 - -
2	ZN2_CY6_FUNGAL_2	PS50048	Zn(2)-C6 fungal-type DNA-binding domain profile.	HAP1_YEASK	63-95	2	C:63-95 D:63-95 - -
				HAP1_YEAST	63-95	2	C:63-95 D:63-95 - -
				HAP1_YEASX	63-95	2	C:63-95 D:63-95 - -

Biological Unit 2 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZN2_CY6_FUNGAL_1	PS00463	Zn(2)-C6 fungal-type DNA-binding domain signature.	HAP1_YEASK	63-93	2	- - G:63-93 H:63-93
				HAP1_YEAST	63-93	2	- - G:63-93 H:63-93
				HAP1_YEASX	63-93	2	- - G:63-93 H:63-93
2	ZN2_CY6_FUNGAL_2	PS50048	Zn(2)-C6 fungal-type DNA-binding domain profile.	HAP1_YEASK	63-95	2	- - G:63-95 H:63-95
				HAP1_YEAST	63-95	2	- - G:63-95 H:63-95
				HAP1_YEASX	63-95	2	- - G:63-95 H:63-95

(no "Exon" information available for 1HWT)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:DNA  Length:20
                                                    
                 1hwt A   1 GCGCTATTATCGCTATTAGC  20
                                    10        20

Chain B from PDB  Type:DNA  Length:20
                                                    
                 1hwt B   1 GCTAATAGCGATAATAGCGC  20
                                    10        20

Chain C from PDB  Type:PROTEIN  Length:70
 aligned with HAP1_YEASK | G2WJ80 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:70
                                    68        78        88        98       108       118       128
           HAP1_YEASK    59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtc1 C:59-97 Hap1 (Cyp1)            d1hwtc2 C:98-128 HAP1           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh...........hhhhhh..hhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----ZN2_CY6_FUNGAL_1  PDB: C:63-93 ----------------------------------- PROSITE (2)
                PROSITE (3) ----ZN2_CY6_FUNGAL_2  PDB: C:63-95   --------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------- Transcript
                 1hwt C  59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    68        78        88        98       108       118       128

Chain C from PDB  Type:PROTEIN  Length:70
 aligned with HAP1_YEAST | P0CE41 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:70
                                    68        78        88        98       108       118       128
           HAP1_YEAST    59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtc1 C:59-97 Hap1 (Cyp1)            d1hwtc2 C:98-128 HAP1           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh...........hhhhhh..hhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----ZN2_CY6_FUNGAL_2  PDB: C:63-95   --------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ----ZN2_CY6_FUNGAL_1  PDB: C:63-93 ----------------------------------- PROSITE (6)
                 Transcript ---------------------------------------------------------------------- Transcript
                 1hwt C  59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    68        78        88        98       108       118       128

Chain C from PDB  Type:PROTEIN  Length:70
 aligned with HAP1_YEASX | P0CS82 from UniProtKB/Swiss-Prot  Length:1483

    Alignment length:70
                                    68        78        88        98       108       118       128
           HAP1_YEASX    59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtc1 C:59-97 Hap1 (Cyp1)            d1hwtc2 C:98-128 HAP1           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh...........hhhhhh..hhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ZN2_CY6_FUNGAL_1  PDB: C:63-93 ----------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----ZN2_CY6_FUNGAL_2  PDB: C:63-95   --------------------------------- PROSITE (5)
                 Transcript ---------------------------------------------------------------------- Transcript
                 1hwt C  59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    68        78        88        98       108       118       128

Chain D from PDB  Type:PROTEIN  Length:74
 aligned with HAP1_YEASK | G2WJ80 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:74
                                    64        74        84        94       104       114       124    
           HAP1_YEASK    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtd1 D:55-97 Hap1 (Cyp1)                d1hwtd2 D:98-128 HAP1           SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh...........hhhhh...hhh.........hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------ZN2_CY6_FUNGAL_1  PDB: D:63-93 ----------------------------------- PROSITE (2)
                PROSITE (3) --------ZN2_CY6_FUNGAL_2  PDB: D:63-95   --------------------------------- PROSITE (3)
                 Transcript -------------------------------------------------------------------------- Transcript
                 1hwt D  55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    64        74        84        94       104       114       124

Chain D from PDB  Type:PROTEIN  Length:74
 aligned with HAP1_YEAST | P0CE41 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:74
                                    64        74        84        94       104       114       124    
           HAP1_YEAST    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtd1 D:55-97 Hap1 (Cyp1)                d1hwtd2 D:98-128 HAP1           SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh...........hhhhh...hhh.........hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------ZN2_CY6_FUNGAL_2  PDB: D:63-95   --------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------ZN2_CY6_FUNGAL_1  PDB: D:63-93 ----------------------------------- PROSITE (6)
                 Transcript -------------------------------------------------------------------------- Transcript
                 1hwt D  55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    64        74        84        94       104       114       124

Chain D from PDB  Type:PROTEIN  Length:74
 aligned with HAP1_YEASX | P0CS82 from UniProtKB/Swiss-Prot  Length:1483

    Alignment length:74
                                    64        74        84        94       104       114       124    
           HAP1_YEASX    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtd1 D:55-97 Hap1 (Cyp1)                d1hwtd2 D:98-128 HAP1           SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh...........hhhhh...hhh.........hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------ZN2_CY6_FUNGAL_1  PDB: D:63-93 ----------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------ZN2_CY6_FUNGAL_2  PDB: D:63-95   --------------------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------- Transcript
                 1hwt D  55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    64        74        84        94       104       114       124

Chain E from PDB  Type:DNA  Length:20
                                                    
                 1hwt E   1 GCGCTATTATCGCTATTAGC  20
                                    10        20

Chain F from PDB  Type:DNA  Length:20
                                                    
                 1hwt F   1 GCTAATAGCGATAATAGCGC  20
                                    10        20

Chain G from PDB  Type:PROTEIN  Length:70
 aligned with HAP1_YEASK | G2WJ80 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:70
                                    68        78        88        98       108       118       128
           HAP1_YEASK    59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtg1 G:59-97 Hap1 (Cyp1)            d1hwtg2 G:98-128 HAP1           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh...........hhhhhh..hhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----ZN2_CY6_FUNGAL_1  PDB: G:63-93 ----------------------------------- PROSITE (2)
                PROSITE (3) ----ZN2_CY6_FUNGAL_2  PDB: G:63-95   --------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------- Transcript
                 1hwt G  59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    68        78        88        98       108       118       128

Chain G from PDB  Type:PROTEIN  Length:70
 aligned with HAP1_YEAST | P0CE41 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:70
                                    68        78        88        98       108       118       128
           HAP1_YEAST    59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtg1 G:59-97 Hap1 (Cyp1)            d1hwtg2 G:98-128 HAP1           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh...........hhhhhh..hhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----ZN2_CY6_FUNGAL_2  PDB: G:63-95   --------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ----ZN2_CY6_FUNGAL_1  PDB: G:63-93 ----------------------------------- PROSITE (6)
                 Transcript ---------------------------------------------------------------------- Transcript
                 1hwt G  59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    68        78        88        98       108       118       128

Chain G from PDB  Type:PROTEIN  Length:70
 aligned with HAP1_YEASX | P0CS82 from UniProtKB/Swiss-Prot  Length:1483

    Alignment length:70
                                    68        78        88        98       108       118       128
           HAP1_YEASX    59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwtg1 G:59-97 Hap1 (Cyp1)            d1hwtg2 G:98-128 HAP1           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh...........hhhhhh..hhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ZN2_CY6_FUNGAL_1  PDB: G:63-93 ----------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----ZN2_CY6_FUNGAL_2  PDB: G:63-95   --------------------------------- PROSITE (5)
                 Transcript ---------------------------------------------------------------------- Transcript
                 1hwt G  59 RIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    68        78        88        98       108       118       128

Chain H from PDB  Type:PROTEIN  Length:73
 aligned with HAP1_YEASK | G2WJ80 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:73
                                    65        75        85        95       105       115       125   
           HAP1_YEASK    56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwth1 H:56-97 Hap1 (Cyp1)               d1hwth2 H:98-128 HAP1           SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh...........hhhhh...hhh.........hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------ZN2_CY6_FUNGAL_1  PDB: H:63-93 ----------------------------------- PROSITE (2)
                PROSITE (3) -------ZN2_CY6_FUNGAL_2  PDB: H:63-95   --------------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------- Transcript
                 1hwt H  56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    65        75        85        95       105       115       125

Chain H from PDB  Type:PROTEIN  Length:73
 aligned with HAP1_YEAST | P0CE41 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:73
                                    65        75        85        95       105       115       125   
           HAP1_YEAST    56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwth1 H:56-97 Hap1 (Cyp1)               d1hwth2 H:98-128 HAP1           SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh...........hhhhh...hhh.........hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------ZN2_CY6_FUNGAL_2  PDB: H:63-95   --------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------ZN2_CY6_FUNGAL_1  PDB: H:63-93 ----------------------------------- PROSITE (6)
                 Transcript ------------------------------------------------------------------------- Transcript
                 1hwt H  56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    65        75        85        95       105       115       125

Chain H from PDB  Type:PROTEIN  Length:73
 aligned with HAP1_YEASX | P0CS82 from UniProtKB/Swiss-Prot  Length:1483

    Alignment length:73
                                    65        75        85        95       105       115       125   
           HAP1_YEASX    56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1hwth1 H:56-97 Hap1 (Cyp1)               d1hwth2 H:98-128 HAP1           SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh...........hhhhh...hhh.........hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------ZN2_CY6_FUNGAL_1  PDB: H:63-93 ----------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------ZN2_CY6_FUNGAL_2  PDB: H:63-95   --------------------------------- PROSITE (5)
                 Transcript ------------------------------------------------------------------------- Transcript
                 1hwt H  56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    65        75        85        95       105       115       125

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	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Coiled coil proteins (689)

Fold: Parallel coiled-coil (407)

Superfamily: Leucine zipper domain (105)

Family: Leucine zipper domain (105)

Protein domain: HAP1 (3)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (3)

1a	d1hwtc2	C:98-128
1b	d1hwtd2	D:98-128
1c	d1hwtg2	G:98-128
1d	d1hwth2	H:98-128

Class: Small proteins (3458)

Fold: Zn2/Cys6 DNA-binding domain (15)

Superfamily: Zn2/Cys6 DNA-binding domain (15)

Family: Zn2/Cys6 DNA-binding domain (15)

Protein domain: Hap1 (Cyp1) (4)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (4)

2a	d1hwtc1	C:59-97
2b	d1hwtd1	D:55-97
2c	d1hwtg1	G:59-97
2d	d1hwth1	H:56-97

(no "CATH Domain" information available for 1HWT)

(no "Pfam Domain" information available for 1HWT)

Asymmetric Unit(hide GO term definitions)

Chain C,D,G,H (HAP1_YEASK | G2WJ80)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0043457	regulation of cellular respiration	Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.
	GO:0006357	regulation of transcription from RNA polymerase II promoter	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C,D,G,H (HAP1_YEAST | P0CE41)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000978	RNA polymerase II core promoter proximal region sequence-specific DNA binding	Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
	GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0001077	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0000436	carbon catabolite activation of transcription from RNA polymerase II promoter	Any process involving carbon catabolites that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0071169	establishment of protein localization to chromatin	The directed movement of a protein to a part of a chromosome that is organized into chromatin.
	GO:0061428	negative regulation of transcription from RNA polymerase II promoter in response to hypoxia	Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
	GO:0043457	regulation of cellular respiration	Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006366	transcription from RNA polymerase II promoter	The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C,D,G,H (HAP1_YEASX | P0CS82)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0043457	regulation of cellular respiration	Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.
	GO:0006357	regulation of transcription from RNA polymerase II promoter	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	1hwt
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	HAP1_YEASK \| G2WJ80	:	1pyc 1qp9 2hap
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(no "Related Entries Specified in the PDB File" available for 1HWT)

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (1, 9)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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