1F5T | PD0170 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE

Authors :   S. Chen, A. White, J. Love, J. R. Murphy, D. Ringe

Date :   15 Jun 00 (Deposition) - 25 Sep 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Iron-Regulated Repressor, Dna-Protein Complex, Helix-Turn- Helix Motif, Transcription Regulator, Diphtheria Tox Repressor, Dna-Binding Regulatory Protein, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. S. Chen, A. White, J. Love, J. R. Murphy, D. Ringe
Methyl Groups Of Thymine Bases Are Important For Nucleic Acid Recognition By Dtxr.
Biochemistry V. 39 10397 2000
PubMed-ID: 10956029 | Reference-DOI: 10.1021/BI0009284
(for further references see the PDB file header)

Molecule 1 - 43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE
	Chains	:	E
	Engineered	:	YES
	Synthetic	:	YES

Molecule 2 - 43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE
	Chains	:	F
	Engineered	:	YES
	Synthetic	:	YES

Molecule 3 - DIPHTHERIA TOXIN REPRESSOR
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	CORYNEBACTERIUM DIPHTHERIAE
	Organism Taxid	:	1717
	Synonym	:	IRON-DEPENDENT DIPHTHERIA TOXREGULATORY ELEMENT, TOX REGULATORY FACTOR, TOX REGULON TRANSCRIPTION REGULATOR DTXR

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 8)

No.	Name	Count	Type	Full Name
1	NI	8	Ligand/Ion	NICKEL (II) ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:201 , MET A:1010 , ASP A:1102 , GLU A:1105 , HIS A:1106	BINDING SITE FOR RESIDUE NI A 251
2	AC2	SOFTWARE	HIS A:1079 , GLU A:1083 , HIS A:1098	BINDING SITE FOR RESIDUE NI A 252
3	AC3	SOFTWARE	HOH B:202 , MET B:2010 , ASP B:2102 , GLU B:2105 , HIS B:2106	BINDING SITE FOR RESIDUE NI B 253
4	AC4	SOFTWARE	HIS B:2079 , GLU B:2083 , HIS B:2098	BINDING SITE FOR RESIDUE NI B 254
5	AC5	SOFTWARE	HOH C:203 , MET C:3010 , ASP C:3102 , GLU C:3105 , HIS C:3106	BINDING SITE FOR RESIDUE NI C 255
6	AC6	SOFTWARE	HIS C:3079 , GLU C:3083 , HIS C:3098	BINDING SITE FOR RESIDUE NI C 256
7	AC7	SOFTWARE	HOH D:204 , MET D:4010 , ASP D:4102 , GLU D:4105 , HIS D:4106	BINDING SITE FOR RESIDUE NI D 257
8	AC8	SOFTWARE	HIS D:4079 , GLU D:4083 , HIS D:4098	BINDING SITE FOR RESIDUE NI D 258

(no "SS Bond" information available for 1F5T)

(no "Cis Peptide Bond" information available for 1F5T)

Asymmetric/Biological Unit (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DTXR_CORDI_001 *	R	47	H	DTXR_CORDI	---	---	A B C D	R	1047 2047 3047 4047	H
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	DTXR_CORDI	4-65	4	A:1004-1065 B:2004-2065 C:3004-3065 D:4004-4065
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	DTXR_CORDW	4-65	4	A:1004-1065 B:2004-2065 C:3004-3065 D:4004-4065

(no "Exon" information available for 1F5T)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:120
 aligned with DTXR_CORDI | P0DJL7 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
          DTXR_CORDI      2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLK  121
               SCOP domains d1f5ta1 A:1002-1064 Diphtheria toxin repressor (DtxR)          d1f5ta2 A:1065-1121 Diphtheria toxin repressor (DtxR)     SCOP domains
               CATH domains -1f5tA01 A:1003-1075 'winged helix' repressor DNA binding domain          1f5tA02 A:1076-1121                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --HTH_DTXR  PDB: A:1004-1065 UniProt: 4-65                      -------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                1f5t A 1002 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLK 1121
                                  1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121

Chain A from PDB  Type:PROTEIN  Length:120
 aligned with DTXR_CORDW | H2I233 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
          DTXR_CORDW      2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLK  121
               SCOP domains d1f5ta1 A:1002-1064 Diphtheria toxin repressor (DtxR)          d1f5ta2 A:1065-1121 Diphtheria toxin repressor (DtxR)     SCOP domains
               CATH domains -1f5tA01 A:1003-1075 'winged helix' repressor DNA binding domain          1f5tA02 A:1076-1121                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --HTH_DTXR  PDB: A:1004-1065 UniProt: 4-65                      -------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                1f5t A 1002 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLK 1121
                                  1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121

Chain B from PDB  Type:PROTEIN  Length:120
 aligned with DTXR_CORDI | P0DJL7 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
          DTXR_CORDI      2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLK  121
               SCOP domains d1f5tb1 B:2002-2064 Diphtheria toxin repressor (DtxR)          d1f5tb2 B:2065-2121 Diphtheria toxin repressor (DtxR)     SCOP domains
               CATH domains -1f5tB01 B:2003-2075 'winged helix' repressor DNA binding domain          1f5tB02 B:2076-2121                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --HTH_DTXR  PDB: B:2004-2065 UniProt: 4-65                      -------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                1f5t B 2002 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLK 2121
                                  2011      2021      2031      2041      2051      2061      2071      2081      2091      2101      2111      2121

Chain B from PDB  Type:PROTEIN  Length:120
 aligned with DTXR_CORDW | H2I233 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
          DTXR_CORDW      2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLK  121
               SCOP domains d1f5tb1 B:2002-2064 Diphtheria toxin repressor (DtxR)          d1f5tb2 B:2065-2121 Diphtheria toxin repressor (DtxR)     SCOP domains
               CATH domains -1f5tB01 B:2003-2075 'winged helix' repressor DNA binding domain          1f5tB02 B:2076-2121                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --HTH_DTXR  PDB: B:2004-2065 UniProt: 4-65                      -------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                1f5t B 2002 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLK 2121
                                  2011      2021      2031      2041      2051      2061      2071      2081      2091      2101      2111      2121

Chain C from PDB  Type:PROTEIN  Length:120
 aligned with DTXR_CORDI | P0DJL7 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
          DTXR_CORDI      2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLK  121
               SCOP domains d1f5tc1 C:3002-3064 Diphtheria toxin repressor (DtxR)          d1f5tc2 C:3065-3121 Diphtheria toxin repressor (DtxR)     SCOP domains
               CATH domains -1f5tC01 C:3003-3075 'winged helix' repressor DNA binding domain          1f5tC02 C:3076-3121                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --HTH_DTXR  PDB: C:3004-3065 UniProt: 4-65                      -------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                1f5t C 3002 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLK 3121
                                  3011      3021      3031      3041      3051      3061      3071      3081      3091      3101      3111      3121

Chain C from PDB  Type:PROTEIN  Length:120
 aligned with DTXR_CORDW | H2I233 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
          DTXR_CORDW      2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLK  121
               SCOP domains d1f5tc1 C:3002-3064 Diphtheria toxin repressor (DtxR)          d1f5tc2 C:3065-3121 Diphtheria toxin repressor (DtxR)     SCOP domains
               CATH domains -1f5tC01 C:3003-3075 'winged helix' repressor DNA binding domain          1f5tC02 C:3076-3121                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --HTH_DTXR  PDB: C:3004-3065 UniProt: 4-65                      -------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                1f5t C 3002 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLK 3121
                                  3011      3021      3031      3041      3051      3061      3071      3081      3091      3101      3111      3121

Chain D from PDB  Type:PROTEIN  Length:120
 aligned with DTXR_CORDI | P0DJL7 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
          DTXR_CORDI      2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLK  121
               SCOP domains d1f5td1 D:4002-4064 Diphtheria toxin repressor (DtxR)          d1f5td2 D:4065-4121 Diphtheria toxin repressor (DtxR)     SCOP domains
               CATH domains -1f5tD01 D:4003-4075 'winged helix' repressor DNA binding domain          1f5tD02 D:4076-4121                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------H-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_DTXR  PDB: D:4004-4065 UniProt: 4-65                      -------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                1f5t D 4002 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLK 4121
                                  4011      4021      4031      4041      4051      4061      4071      4081      4091      4101      4111      4121

Chain D from PDB  Type:PROTEIN  Length:120
 aligned with DTXR_CORDW | H2I233 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
          DTXR_CORDW      2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLK  121
               SCOP domains d1f5td1 D:4002-4064 Diphtheria toxin repressor (DtxR)          d1f5td2 D:4065-4121 Diphtheria toxin repressor (DtxR)     SCOP domains
               CATH domains -1f5tD01 D:4003-4075 'winged helix' repressor DNA binding domain          1f5tD02 D:4076-4121                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------H-------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --HTH_DTXR  PDB: D:4004-4065 UniProt: 4-65                      -------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                1f5t D 4002 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLK 4121
                                  4011      4021      4031      4041      4051      4061      4071      4081      4091      4101      4111      4121

Chain E from PDB  Type:DNA  Length:43
                                                                            
                1f5t E  295 AACATGCAAGGCTAAGGTTAGCCTAACCTTAGCCTTGCATGTT  337
                                   304       314       324       334

Chain F from PDB  Type:DNA  Length:43
                                                                            
                1f5t F  396 TTAACATGCAAGGCTAAGGTTAGGCTAACCTTAGCCTTGCATG  438
                                   405       415       425       435

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Arc Repressor Mutant, subunit A (1030)

Homologous Superfamily: 'winged helix' repressor DNA binding domain (507)

[unclassified] (77)

1a	1f5tA01	A:1003-1075
1b	1f5tB01	B:2003-2075
1c	1f5tC01	C:3003-3075
1d	1f5tD01	D:4003-4075

Topology: Diphtheria Toxin Repressor; domain 2 (34)

Homologous Superfamily: Diphtheria Toxin Repressor, domain 2 (32)

[unclassified] (5)

2a	1f5tA02	A:1076-1121
2b	1f5tB02	B:2076-2121
2c	1f5tC02	C:3076-3121
2d	1f5tD02	D:4076-4121

(no "Pfam Domain" information available for 1F5T)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (DTXR_CORDW | H2I233)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046914	transition metal ion binding	Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D (DTXR_CORDI | P0DJL7)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046914	transition metal ion binding	Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1f5t)

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	1f5t
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	DTXR_CORDI \| P0DJL7
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	DTXR_CORDW \| H2I233
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	DTXR_CORDI \| P0DJL7
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	DTXR_CORDW \| H2I233
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(no "Related Entries Specified in the PDB File" available for 1F5T)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 4)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (2, 8)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (7, 14)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File