Entries with manually generated images from the JenaLib are marked in bold .
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PD0004 1DDN n.a. DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX Y
DNA OPERATOR COMPLEX
PD0007 9ANT n.a. ANTENNAPEDIA HOMEODOMAIN (MUTANT C39S)/DNA Y
COMPLEX
PD0008 1A6Y n.a. REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX Y
PD0016 3HDD n.a. ENGRAILED HOMEODOMAIN/DNA COMPLEX Y
PD0020 1BC8 n.a. SAP-1 ETS DOMAIN/DNA COMPLEX Y
PD0022 3ORC n.a. CRO REPRESSOR/DNA COMPLEX Y
PD0024 1B3T n.a. EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX Y
PD0025 1BDV n.a. ARC FV10 REPRESSOR/DNA COMPLEX Y
PD0027 1BC7 n.a. ERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A Y
(SAP-1)/DNA COMPLEX
PD0028 1BG1 n.a. TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX Y
PD0035 1BDT n.a. WILD TYPE GENE-REGULATING PROTEIN ARC/DNA Y
COMPLEX
PD0042 1B8I n.a. ULTRABITHORAX HOMEOTIC PROTEIN IV/HOMEOBOX Y
PROTEIN EXTRADENTICLE/DNA COMPLEX
PD0045 1CF7 n.a. TRANSCRIPTION FACTOR E2F-4 DP-2/DNA TERNARY Y
COMPLEX
PD0046 1CIT n.a. ORPHAN NUCLEAR RECEPTOR NGFI-B/DNA COMPLEX Y
PD0050 6PAX n.a. HOMEOBOX PROTEIN PAX-6/DNA COMPLEX Y
PD0051 1CKT n.a. HIGH MOBILITY GROUP PROTEIN HMG1/DNA COMPLEX Y
PD0056 1QPZ n.a. PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Y
COMPLEX
PD0057 1QP0 n.a. PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Y
COMPLEX
PD0058 1QP4 n.a. PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Y
COMPLEX, HYPOXANTHINE
PD0059 1QP7 n.a. PURINE REPRESSOR/DNA COMPLEX, HYPOXANTHINE Y
PD0060 1QQA n.a. PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Y
COMPLEX
PD0061 1QQB n.a. PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Y
COMPLEX
PD0069 1C0W n.a. DIPHTHERIA TOXIN REPRESSOR/DNA COMPLEX Y
PD0070 1D3U n.a. TATA-BINDING PROTEIN/TRANSCRIPTION Y
INITIATION FACTOR IIB/DNA COMPLEX
PD0071 1BY4 n.a. PROTEIN RETINOIC ACID RECEPTOR RXR- Y
ALPHA/DNA COMPLEX
------------------------------------------------------------------------
Page 1 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PD0073 3HTS n.a. HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEX Y
PD0075 1B72 n.a. PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY Y
COMPLEX
PD0076 2IRF n.a. INTERFERON REGULATORY FACTOR 2/DNA COMPLEX Y
PD0078 1D5Y n.a. ROB TRANSCRIPTION FACTOR/DNA COMPLEX Y
PD0088 1BF4 n.a. PROTEIN (CHROMOSOMAL PROTEIN SSO7D)/DNA Y
COMPLEX
PD0089 1HWT n.a. PROTEIN (HEME ACTIVATOR PROTEIN)/DNA COMPLEX Y
PD0090 2HAP n.a. HEME ACTIVATOR PROTEIN HAP1-18/DNA COMPLEX Y
PD0091 1B01 n.a. TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX Y
PD0092 1CQT n.a. POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR Y
1/POU DOMAIN, CLASS 2, ASSOCIATING FACTOR
1/DNA COMPLEX
PD0102 1DH3 n.a. TRANSCRIPTION FACTOR CREB/DNA COMPLEX Y
PD0107 1REP n.a. REPLICATION INITIATION PROTEIN/DNA COMPLEX Y
PD0109 1ZAY n.a. PURINE REPRESSOR/DNA COMPLEX Y
PD0110 1QRV n.a. HIGH MOBILITY GROUP PROTEIN D/DNA COMPLEX Y
PD0111 1DP7 n.a. MHC CLASS II TRANSCRIPTION FACTOR HRFX1/DNA Y
COMPLEX
PD0112 1C9B n.a. TATA-BOX BINDING PROTEIN, GENERAL Y
TRANSCRIPTION FACTOR IIB/DNA COMPLEX
PD0114 1DU0 n.a. ENGRAILED HOMEODOMAIN (MUTANT Q50A)/DNA Y
COMPLEX
PD0115 1DSZ n.a. RETINOIC ACID RECEPTOR RXR ALPHA AND RAR Y
ALPHA/DNA COMPLEX
PD0116 1DUX n.a. ETS-DOMAIN PROTEIN ELK-1/DNA COMPLEX Y
PD0118 1EFA n.a. LAC REPRESSOR/DNA COMPLEX Y
PD0121 1EGW n.a. MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, Y
POLYPEPTIDE A/DNA COMPLEX
PD0122 1QPI n.a. TETRACYCLINE REPRESSOR/DNA COMPLEX Y
PD0142 1EWQ n.a. DNA MISMATCH REPAIR PROTEIN MUTS/DNA COMPLEX Y
PD0144 1EYG n.a. SINGLE-STRAND DNA-BINDING PROTEIN/DNA Y
COMPLEX
PD0145 1EXI n.a. MULTIDRUG-EFFLUX TRANSPORTER REGULATOR/DNA Y
COMPLEX
PD0146 1EXJ n.a. MULTIDRUG-EFFLUX TRANSPORTER REGULATOR/DNA Y
COMPLEX
------------------------------------------------------------------------
Page 2 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PD0148 1QP9 n.a. CYP1(HAP1-PC7) ACTIVATORY PROTEIN/DNA Y
COMPLEX
PD0154 1QN4 n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0155 1QN5 n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0156 1QN6 n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0157 1QN7 n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0158 1QN8 n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0159 1QN9 n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0160 1QNA n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0161 1QNB n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0162 1QNC n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0163 1QNE n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0164 1QN3 n.a. TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA Y
COMPLEX
PD0165 1F2I n.a. FUSION OF N-TERMINAL 17-MER PEPTIDE Y
EXTENSION TO ZIF12/DNA COMPLEX
PD0167 1F4K n.a. REPLICATION TERMINATION PROTEIN/DNA COMPLEX Y
PD0170 1F5T n.a. DIPHTHERIA TOXIN REPRESSOR/DNA COMPLEX Y
PD0173 1MJ2 n.a. METHIONINE REPRESSOR MUTANT (Q44K)/ DNA Y
COMPLEX
PD0180 1GD2 n.a. TRANSCRIPTION FACTOR PAP1/DNA COMPLEX Y
PD0181 1FW6 n.a. DNA MISMATCH REPAIR PROTEIN MUTS/DNA COMPLEX Y
PD0182 1FYK n.a. HEAT SHOCK FACTOR PROTEIN/DNA COMPLEX Y
PD0183 1FYL n.a. HEAT SHOCK FACTOR PROTEIN/DNA COMPLEX Y
PD0184 1FYM n.a. HEAT SHOCK FACTOR PROTEIN/DNA COMPLEX Y
PD0185 1FZP n.a. STAPHYLOCOCCAL ACCESSORY REGULATOR A, 5'- Y
D(P*AP*TP*AP*TP*AP*TP*A)-3'
PD0186 1G2D n.a. TATA BOX ZINC FINGER PROTEIN/DNA COMPLEX Y
PD0187 1G2F n.a. TATA BOX ZINC FINGER PROTEIN/DNA COMPLEX Y
PD0191 1GA5 n.a. ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA)/DNA Y
COMPLEX
------------------------------------------------------------------------
Page 3 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PD0193 1HLZ n.a. ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA)/DNA Y
COMPLEX
PD0198 1IO4 n.a. CAAT/ENHANCER BINDING PROTEIN BETA/DNA Y
COMPLEX
PD0199 1HW2 n.a. FATTY ACID METABOLISM REGULATOR PROTEIN/DNA Y
COMPLEX
PD0201 1E3M n.a. DNA MISMATCH REPAIR PROTEIN MUTS/DNA Complex Y
PD0204 1HJB n.a. CAAT/ENHANCER BINDING PROTEIN BETA/DNA Y
COMPLEX
PD0205 1HJC n.a. RUNT-RELATED TRANSCRIPTION FACTOR 1/DNA Y
Complex
PD0208 1IC8 n.a. HEPATOCYTE NUCLEAR FACTOR 1-ALPHA/DNA Y
Complex
PD0210 1H9D n.a. CORE-BINDING FACTOR ALPHA SUBUNIT1, CORE- Y
BINDING FACTOR CBF-BETA/DNA Complex
PD0211 1IG7 n.a. HOMEOTIC PROTEIN MSX-1/DNA Complex Y
PD0214 1IMH n.a. TonEBP/DNA Complex Y
PD0219 1JE8 n.a. NARL/DNA Complex Y
PD0221 1JFI n.a. NC2/TBP/DNA Complex Y
PD0222 1GJI n.a. C-REL PROTO-ONCOGENE PROTEIN/DNA Complex Y
PD0223 1JFS n.a. PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Y
Complex
PD0224 1JFT n.a. PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Y
Complex
PD0225 1E3O n.a. OCTAMER-BINDING TRANSCRIPTION FACTOR 1/DNA Y
Complex
PD0226 1JH9 n.a. PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Y
Complex
PD0227 1JJ4 n.a. REGULATORY PROTEIN E2/DNA Complex Y
PD0230 1JK1 n.a. ZIF268/DNA Complex Y
PD0231 1JK2 n.a. ZIF268/DNA Complex Y
PD0232 1H9T n.a. FATTY ACID METABOLISM REGULATOR PROTEIN/DNA Y
Complex
PD0233 1HBX n.a. SERUM RESPONSE FACTOR, ETS-DOMAIN PROTEIN Y
ELK-4/DNA Complex
PD0241 1JNM n.a. PROTO-ONCOGENE C-JUN/DNA Complex Y
PD0243 1MHD n.a. SMAD3/DNA Complex Y
PD0245 1MJM n.a. METHIONINE REPRESSOR/DNA Complex Y
------------------------------------------------------------------------
Page 4 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PD0246 1MJO n.a. METHIONINE REPRESSOR/DNA Complex Y
PD0247 1MJP n.a. METHIONINE REPRESSOR/DNA Complex Y
PD0248 1MJQ n.a. METHIONINE REPRESSOR/DNA Complex Y
PD0249 1JT0 n.a. HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN Y
QACA 5'REGION/DNA Complex
PD0250 1JWL n.a. LACTOSE OPERON REPRESSOR/DNA Complex Y
PD0257 1K61 n.a. MATING-TYPE PROTEIN ALPHA-2/DNA Complex Y
PD0258 1K6O n.a. ETS-domain protein ELK-4/Serum response Y
factor/DNA Complex
PD0259 1K78 n.a. PAIRED BOX PROTEIN PAX5/C-ETS-1 PROTEIN/DNA Y
COMPLEX
PD0260 1K79 n.a. C-ETS-1 PROTEIN/DNA Complex Y
PD0261 1K7A n.a. C-ETS-1 PROTEIN/DNA COMPLEX Y
PD0268 1KB2 n.a. VITAMIN D3 RECEPTOR/DNA Complex Y
PD0269 1KB4 n.a. VITAMIN D3 RECEPTOR/DNA Complex Y
PD0270 1KB6 n.a. VITAMIN D3 RECEPTOR/DNA Complex Y
PD0274 1HF0 n.a. OCTAMER-BINDING TRANSCRIPTION FACTOR 1/DNA Y
Complex
PD0282 1KSX n.a. REPLICATION PROTEIN E1/DNA Complex Y
PD0283 1KSY n.a. REPLICATION PROTEIN E1/DNA Complex Y
PD0284 1KU7 n.a. SIGMA FACTOR SIGA/DNA Complex Y
PD0288 1H88 n.a. CAAT/ENHANCER BINDING PROTEIN BETA/MYB Y
PROTO-ONCOGENE PROTEIN/DNA COMPLEX
PD0289 1H89 n.a. CAAT/ENHANCER BINDING PROTEIN BETA/MYB Y
PROTO-ONCOGENE PROTEIN/DNA Complex
PD0290 1H8A n.a. CAAT/ENHANCER BINDING PROTEIN BETA/MYB Y
TRANSFORMING PROTEIN/DNA Complex
PD0297 1IU3 n.a. SEQA PROTEIN/DNA Complex Y
PD0298 1L3L n.a. Transcriptional activator protein traR/DNA Y
Complex
PD0299 1J59 n.a. CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA Y
Complex, ADENOSINE-3',5'-CYCLIC-
MONOPHOSPHATE
PD0305 1L9Z n.a. RNA polymerase Holoenzyme/DNA Y
PD0306 1LB2 n.a. CATABOLITE GENE ACTIVATOR PROTEIN/DNA- Y
directed RNA polymerase alpha chain
(E.C.2.7.7.6)/DNA Complex, ADENOSINE-3',5'-
CYCLIC-MONOPHOSPHATE
------------------------------------------------------------------------
Page 5 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PD0307 1LE5 n.a. Nuclear factor NF-kappa-B p65 Y
subunit/Nuclear factor NF-kappa-B p50
subunit/DNA Complex
PD0308 1LE8 n.a. MATING-TYPE PROTEIN A-1, Mating-type Y
protein alpha-2/DNA Complex
PD0309 1LE9 n.a. NUCLEAR FACTOR NF-KAPPA-B P65 Y
SUBUNIT/NUCLEAR FACTOR NF-KAPPA-B P50
SUBUNIT/DNA Complex
PD0310 1LEI n.a. NUCLEAR FACTOR NF-KAPPA-B P65 Y
SUBUNIT/NUCLEAR FACTOR NF-KAPPA-B P50
SUBUNIT/DNA Complex
PD0311 1H6F n.a. T-BOX TRANSCRIPTION FACTOR TBX3/DNA Complex Y
PD0312 1LLM n.a. Zif23-GCN4 Chimera/DNA Complex Y
PD0314 1LQ1 n.a. Stage 0 sporulation protein A/DNA Y
PD0315 1LRR n.a. SeqA protein/DNA Complex Y
PD0338 1MDM n.a. PAIRED BOX PROTEIN PAX-5, C-ETS-1 Y
PROTEIN/DNA Complex
PD0339 1MJE n.a. DELETED IN SPLIT HAND/SPLIT FOOT PROTEIN Y
1/BREAST CANCER TYPE 2 SUSCEPTIBILITY
PROTEIN/DNA Complex
PD0341 1MNN n.a. Ndt80 protein/DNA Complex Y
PD0363 1N6J n.a. Myocyte-specific enhancer factor Y
2B/Calcineurin-binding protein Cabin 1/DNA
complex
PD0368 1NGM n.a. Transcription initiation factor Y
TFIID/Transcription factor IIIB 70 kDa
subunit/DNA
PD0369 1NH2 n.a. Transcription initiation factor TFIID, Y
Transcription initiation factor IIA large
chain, Transcription initiation factor IIA
small chain/DNA Complex
PD0371 1J1V n.a. Chromosomal replication initiator protein Y
dnaA/DNA
PD0386 1NKP n.a. Myc proto-oncogene protein/Max protein/DNA Y
PD0387 1NLW n.a. MAD PROTEIN/MAX PROTEIN/DNA Y
PD0388 1NNE n.a. DNA Mismatch Repair protein MutS/DNA Y
PD0393 1NVP n.a. TATA box binding protein, Transcription Y
initiation factor IIA alpha and beta
chains, Transcription initiation factor IIA
gamma chain/DNA Complex
PD0395 1NWQ n.a. CCAAT/enhancer binding protein alpha/DNA Y
PD0398 1O3Q n.a. CATABOLITE GENE ACTIVATOR PROTEIN/DNA Y
COMPLEX
PD0399 1O3R n.a. CATABOLITE GENE ACTIVATOR PROTEIN/DNA Y
COMPLEX
PD0400 1O3S n.a. CATABOLITE GENE ACTIVATOR PROTEIN/DNA Y
COMPLEX
PD0401 1O3T n.a. CATABOLITE GENE ACTIVATOR PROTEIN/DNA Y
COMPLEX
PD0405 1OUZ n.a. Integration Host Factor Alpha- Y
subunit/Integration Host Factor Beta-
subunit/DNA (35-MER)/5'-
D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP
*T)-3'/5'-
D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP
*AP*GP*CP*AP*CP*C)-3'
------------------------------------------------------------------------
Page 6 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PD0406 1OWF n.a. Integration Host Factor Alpha- Y
subunit/Integration Host Factor Beta-
subunit/Phage lambda H' site/5'-
D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP
*T)-3'/5'-
D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP
*TP*GP*CP*AP*CP*C)-3'
PD0407 1OWG n.a. Integration Host Factor Alpha- Y
subunit/Integration Host Factor Beta-
subunit/DNA (35-MER)/5'-
D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP
*T)-3'/5'-
D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP
*AP*GP*CP*AP*CP*C)-3'
PD0408 1OWR n.a. Nuclear factor of activated T-cells, Y
cytoplasmic 2/DNA
PD0409 1OZJ n.a. SMAD 3/Smad binding element Y
PD0424 1P47 n.a. Early growth response protein 1/DNA Complex Y
PD0429 1P7H n.a. NUCLEAR FACTOR OF ACTIVATED T-CELLS, Y
CYTOPLASMIC 2/DNA Complex
PD0452 1PP7 n.a. 39 kDa initiator binding protein/FERREDOXIN Y
INR Complex
PD0453 1PP8 n.a. 39 kDa initiator binding protein/ALPHA-SCS Y
INR Complex
PD0455 1PUF n.a. Homeobox protein Hox-A9, Pre-B-cell Y
leukemia transcription factor-1/DNA Complex
PD0456 1PV4 n.a. Transcription termination factor rho/DNA Y
Complex
PD0464 1PZU n.a. Nuclear factor of activated T-cells, Y
cytoplasmic 2/DNA Complex
PD0470 1R0N n.a. Retinoic acid receptor RXR-alpha/Ecdysone Y
receptor/DNA Complex
PD0471 1R0O n.a. Ultraspiracle protein/Ecdysone receptor/DNA Y
Complex
PD0475 1R4O n.a. Glucocorticoid receptor/DNA Complex Y
PD0476 1R4R n.a. Glucocorticoid receptor/DNA Complex Y
PD0480 1R71 n.a. Transcriptional repressor protein korB/DNA Y
Complex
PD0492 1RIO n.a. sigma factor SigA/Repressor protein CI/DNA Y
Complex
PD0495 1RRQ n.a. 5'-D(AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)- Y
3'/5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-
3'/MutY
PD0496 1RRS n.a. 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)- Y
3'/5'-
D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-
3'/MutY
PD0497 1RRT n.a. 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)- Y
3'/5'-
D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-
3'/MutY
PD0506 1RZ9 n.a. Rep PROTEIN/DNA Complex Y
PDE025 1FJL n.a. SEGMENTATION PROTEIN PAIRED/DNA COMPLEX Y
PDO001 1JMC n.a. REPLICATION PROTEIN A/DNA COMPLEX Y
PDR001 3CRO n.a. 434 CRO/DNA COMPLEX Y
PDR002 n.a. n.a. 434 CRO/DNA COMPLEX n.a.
------------------------------------------------------------------------
Page 7 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PDR003 4CRO n.a. LAMBDA CRO/DNA COMPLEX Y
PDR004 2OR1 n.a. 434 REPRESSOR/DNA COMPLEX Y
PDR005 n.a. n.a. 434 CRO/DNA COMPLEX n.a.
PDR006 1CGP n.a. CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA Y
COMPLEX + ADENOSINE-3',5'-CYCLIC-
MONOPHOSPHATE
PDR008 1CMA n.a. MET REPRESSOR/DNA COMPLEX + S-ADENOSYL- Y
METHIONINE
PDR009 1TRO n.a. TRP REPRESSOR/DNA COMPLEX + TRYPTOPHAN Y
PDR010 1LMB n.a. LAMBDA REPRESSOR/DNA COMPLEX Y
PDR011 1RPE n.a. 434 REPRESSOR/DNA COMPLEX Y
PDR012 1PAR n.a. ARC REPRESSOR/DNA COMPLEX Y
PDR013 1TRR n.a. TRP REPRESSOR/DNA COMPLEX + TRYPTOPHAN Y
PDR015 1PER n.a. 434 REPRESSOR/DNA COMPLEX Y
PDR016 1LLI n.a. LAMBDA REPRESSOR (TRIPLE MUTANT)/DNA COMPLEX Y
PDR018 1PDN n.a. PRD PAIRED/DNA COMPLEX Y
PDR020 1PNR n.a. PURINE REPRESSOR/DNA COMPLEX + HYPOXANTHINE Y
1
PDR021 2NLL n.a. RETINOIC ACID RECEPTOR, THYROID HORMONE Y
RECEPTOR/DNA COMPLEX
PDR022 1TSR n.a. P53 TUMOR SUPPRESSOR/DNA COMPLEX Y
PDR024 1RUN n.a. CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA Y
COMPLEX + ADENOSINE-3',5'-CYCLIC-
MONOPHOSPHATE
PDR025 1RUO n.a. CATABOLITE GENE ACTIVATOR PROTEIN (CAP) Y
MUTANT/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-
MONOPHOSPHATE
PDR026 1LBG n.a. LACTOSE OPERON REPRESSOR/DNA COMPLEX Y
PDR027 1TUP n.a. P53 TUMOR SUPPRESSOR/DNA COMPLEX Y
PDR028 1BDH n.a. PURINE REPRESSOR MUTANT/DNA COMPLEX + Y
HYPOXANTHINE 1
PDR029 1BDI n.a. PURINE REPRESSOR/DNA COMPLEX + HYPOXANTHINE Y
1
PDR030 1WET n.a. PURINE REPRESSOR/DNA COMPLEX + GUANINE Y
PDR031 1AIS n.a. TATA-BINDING PROTEIN, TRANSCRIPTION Y
INITIATION FACTOR IIB/DNA COMPLEX
PDR032 1A3Q n.a. HUMAN NF-KAPPA-B P52 BOUND TO DNA Y
------------------------------------------------------------------------
Page 8 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PDR033 1VKX n.a. NF-KAPPA B P65 AND P50 SUBUNITS/DNA COMPLEX Y
PDR034 1AU7 n.a. PIT-1 MUTANT/DNA COMPLEX Y
PDR035 1IF1 n.a. INTERFERON REGULATORY FACTOR 1/DNA COMPLEX Y
PDR036 1MNM n.a. MCM1 TRANSCRIPTIONAL REGULATOR, MAT ALPHA-2 Y
TRANSCRIPTIONAL REPRESSOR/DNA COMPLEX
PDR040 2PUA n.a. PURINE REPRESSOR/CO-REPRESSOR/DNA COMPLEX Y
PDR041 2PUB n.a. PURINE REPRESSOR/CO-REPRESSOR/DNA COMPELX Y
PDR042 2PUC n.a. PURINE REPRESSOR/DNA COMPLEX, GUANINE Y
PDR043 2PUE n.a. PURINE REPRESSOR/DNA COMPLEX, ADENINE Y
PDR044 2PUF n.a. PURINE REPRESSOR/DNA COMPLEX, GUANINE Y
PDR045 2PUG n.a. PURINE REPRESSOR/DNA COMPLEX, HYPOXANTHINE Y
PDR046 2PUD n.a. PURINE REPRESSOR/DNA COMPLEX, HYPOXANTHINE Y
PDR049 1AKH n.a. MAT A1/ALPHA2/DNA TERNARY COMPLEX Y
PDR050 1RAM n.a. TRANSCRIPTION FACTOR NF-KB P65/DNA COMPLEX Y
PDR051 2RAM n.a. TRANSCRIPTION FACTOR NF-KB P65/DNA COMPLEX Y
PDR052 1BF5 n.a. TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX Y
PDR053 6CRO n.a. LAMBDA-CRO REPRESSOR/DNA COMPLEX Y
PDR056 1BL0 n.a. MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN/DNA Y
COMPLEX
PDRC01 1GLU n.a. GLUCOCORTICOID RECEPTOR/DNA COMPLEX Y
PDRC03 1HCQ n.a. ESTROGEN RECEPTOR/DNA COMPLEX Y
PDT002 1YSA n.a. GCN4/DNA COMPLEX Y
PDT003 1D66 n.a. GAL4/DNA COMPLEX Y
PDT004 1HDD n.a. ENGRAILED HOMEODOMAIN/DNA COMPLEX Y
PDT005 1APL n.a. MAT-ALPHA2 HOMEODOMAIN/DNA COMPLEX Y
PDT006 1ZAA n.a. ZIF268/DNA COMPLEX Y
PDT007 1DGC n.a. GCN4/DNA COMPLEX Y
------------------------------------------------------------------------
Page 9 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PDT008 2GLI n.a. FIVE-FINGER GLI/DNA COMPLEX Y
PDT009 n.a. n.a. TATA BINDING PROTEIN (TBP)/DNA COMPLEX Y
PDT011 2DRP n.a. TRAMTRACK DNA-BINDING DOMAIN/DNA COMPLEX Y
PDT012 1YTB n.a. TATA BINDING PROTEIN (TBP)/DNA COMPLEX Y
PDT013 n.a. n.a. HNF-3/FORK HEAD DNA-RECOGNITION MOTIF/DNA Y
COMPLEX
PDT014 1FOS n.a. C-FOS:C-JUN PROTO-ONCOGENE PROTEIN/DNA Y
COMPLEX
PDT015 1NFK n.a. NUCLEAR FACTOR KAPPA-B (NF-KB)/DNA COMPLEX Y
PDT016 1MDY n.a. MYOD BHLH DOMAIN/DNA COMPLEX Y
PDT017 1PYI n.a. PYRIMIDINE PATHWAY REGULATOR 1/DNA COMPLEX Y
PDT019 1OCT n.a. OCT-1 POU DOMAIN/DNA COMPLEX Y
PDT020 n.a. n.a. TRANSCRIPTION FACTOR E47 (TF E47) n.a.
PDT021 1SRS n.a. SERUM RESPONSE FACTOR (SRF)/DNA COMPLEX Y
PDT022 1SVC n.a. NUCLEAR FACTOR KAPPA-B (NF-KB) MUTANT/DNA Y
COMPLEX
PDT023 1AN2 n.a. TRANSCRIPTION FACTOR MAX (TF MAX)/DNA Y
COMPLEX
PDT024 1TGH n.a. TATA BINDING PROTEIN (TBP)/DNA COMPLEX Y
PDT025 n.a. n.a. TATA BINDING PROTEIN (TBP)/DNA COMPLEX Y
PDT027 1AN4 n.a. UPSTREAM STIMULATORY FACTOR/DNA COMPLEX Y
PDT028 1YRN n.a. MAT A1 HOMEODOMAIN, MAT ALPHA2 Y
HOMEODOMAIN/DNA COMPLEX
PDT029 2DGC n.a. GCN4/DNA COMPLEX Y
PDT030 1LAT n.a. GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX Y
PDT031 1JGG n.a. EVEN-SKIPPED HOMEODOMAIN/DNA Complex Y
PDT032 1VOL n.a. TRANSCRIPTION FACTOR IIB (TFIIB), TATA Y
BINDING PROTEIN (TBP)/DNA COMPLEX
PDT033 1PUE n.a. TRANSCRIPTION FACTOR PU.1 (TF PU.1)/DNA Y
COMPLEX
PDT034 1CDW n.a. TATA BINDING PROTEIN (TBP)/DNA COMPLEX Y
PDT035 1IGN n.a. RAP1/DNA COMPLEX Y
------------------------------------------------------------------------
Page 10 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PDT036 1YTF n.a. TATA BINDING PROTEIN (TBP), TRANSCRIPTION Y
FACTOR IIA (TFIIA)/DNA COMPLEX
PDT037 n.a. n.a. TATA BINDING PROTEIN (TBP), TRANSCRIPTION n.a.
FACTOR IIA (TFIIA)
PDT038 1UBD n.a. YY1 ZINC FINGER DOMAIN MUTANT/DNA COMPLEX Y
PDT039 1AAY n.a. ZIF268 ZINC FINGER PEPTIDE/DNA COMPLEX Y
PDT040 1IHF n.a. INTEGRATION HOST FACTOR/DNA COMPLEX Y
PDT042 1HLO n.a. MAX/DNA COMPLEX Y
PDT043 2HDD n.a. ENGRAILED HOMEODOMAIN Q50K VARIANT/DNA Y
COMPLEX
PDT044 1ZME n.a. PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR Y
(PUT3)/DNA COMPLEX
PDT045 1XBR n.a. T DOMAIN/DNA COMPLEX Y
PDT046 1A0A n.a. PHOSPHATE SYSTEM POSITIVE REGULATORY Y
PROTEIN PHO4/DNA COMPLEX
PDT048 1AWC n.a. GA BINDING PROTEIN ALPHA, GA BINDING Y
PROTEIN BETA 1/DNA COMPLEX
PDT049 2CGP n.a. CATABOLITE GENE ACTIVATOR PROTEIN/DNA Y
COMPLEX, ADENOSINE-3',5'-CYCLIC-
MONOPHOSPHATE
PDT050 1A02 n.a. TERNARY PROTEIN-DNA COMPLEX (NFAT-FOS- Y
JUN/DNA)
PDT055 1A1F n.a. THREE-FINGER ZIF268 PEPTIDE/DNA COMPLEX Y
PDT056 1A1G n.a. THREE-FINGER ZIF268 PEPTIDE/DNA COMPLEX Y
PDT057 1A1H n.a. QGSR (THREE-FINGER ZIF268 VARIANT)/DNA Y
COMPLEX
PDT058 1A1K n.a. RADR (ZIF268 VARIANT)/DNA COMPLEX Y
PDT059 1A1I n.a. ZINC FINGER/DNA COMPLEX Y
PDT060 1A1J n.a. ZINC FINGER/DNA COMPLEX Y
PDT061 1A1L n.a. ZINC FINGER/DNA COMPLEX Y
PDT062 1AM9 n.a. STEROL REGULATORY ELEMENT BINDING(STRE)/DNA Y
COMPLEX
PDT063 1VPW n.a. PURINE REPRESSOR MUTANT L54M/PURF Y
OPERATOR/DNA COMPLEX
PDT064 1SKN n.a. BINDING DOMAIN OF SKN-1/DNA COMPLEX Y
PDT065 1TF6 n.a. SIX-FINGER TRANSCRIPTION FACTOR IIIA/DNA Y
COMPLEX
PDTB41 1MEY n.a. CONSENSUS ZINC FINGER/DNA COMPLEX Y
------------------------------------------------------------------------
Page 11 created by the NDB Project on Wed May 26 14:30:29 2004
NAMES FOR PROTEIN/DNA (REGULATORY)
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
PDTE01 1ECR n.a. REPLICATION-TERMINATOR PROTEIN (TUS)/DNA Y
COMPLEX
PDV001 2BOP n.a. E2/DNA COMPLEX Y
PDV004 1GPC n.a. CORE GP32/DNA COMPLEX Y
PH0008 1S0V n.a. T7 RNA polymerase(E.C.2.7.7.6)/DNA/RNA Y
Complex
------------------------------------------------------------------------
Page 12 created by the NDB Project on Wed May 26 14:30:29 2004