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(-) Description

Title :  STRUCTURAL BASIS FOR SUBSTRATE SELECTION BY T7 RNA POLYMERASE
 
Authors :  D. Temiakov, V. Patlan, M. Anikin, W. T. Mcallister, S. Yokoyama, D. G. Vassylyev, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  05 Jan 04  (Deposition) - 24 Feb 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,E,F,G  (1x)
Biol. Unit 2:  B,H,I,J  (1x)
Biol. Unit 3:  C,K,L,M  (1x)
Biol. Unit 4:  D,N,O,P  (1x)
Keywords :  T7 Rna Polymerase, Dna, Rna, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Transferase/Dna/Rna Complex, Transferase/Dna-Rna Hybrid Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Temiakov, V. Patlan, M. Anikin, W. T. Mcallister, S. Yokoyama, D. G. Vassylyev
Structural Basis For Substrate Selection By T7 Rna Polymerase.
Cell(Cambridge, Mass. ) V. 116 381 2004
PubMed-ID: 15016373  |  Reference-DOI: 10.1016/S0092-8674(04)00059-5
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- D(*G*GP*GP*AP*AP*TP*CP*GP*AP*TP*AP*TP*CP*GP*CP*CP*GP*C)-3'
    Chains: E, H, K, N
    Engineered: YES
    Other Details: DNA TEMPLATE STRAND
    Synthetic: YES
 
Molecule 2 - 5'-R(*AP*AP*CP*U*GP*CP*GP*GP*CP*GP*AP*U)-3'
    Chains: F, I, L, O
    Engineered: YES
    Other Details: RNA TRANSCRIPT
    Synthetic: YES
 
Molecule 3 - 5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*C)-3'
    Chains: G, J, M, P
    Engineered: YES
    Other Details: DNA NON-TEMPLATE STRAND
    Synthetic: YES
 
Molecule 4 - DNA-DIRECTED RNA POLYMERASE
    Chains: A, B, C, D
    EC Number: 2.7.7.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: DCAT4
    Expression System Taxid: 562
    Gene: 1
    Organism Scientific: ENTEROBACTERIA PHAGE T7
    Organism Taxid: 10760

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): A   EFG         
Biological Unit 2 (1x):  B     HIJ      
Biological Unit 3 (1x):   C       KLM   
Biological Unit 4 (1x):    D         NOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1APC4Ligand/IonDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2MG8Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1APC1Ligand/IonDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1APC1Ligand/IonDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1APC1Ligand/IonDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1APC1Ligand/IonDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREAPC A:2000 , HOH A:3172 , HOH A:3217BINDING SITE FOR RESIDUE MG A 3001
02AC2SOFTWAREASP B:471 , APC B:2001BINDING SITE FOR RESIDUE MG B 3002
03AC3SOFTWAREAPC C:2002 , HOH C:3136BINDING SITE FOR RESIDUE MG C 3003
04AC4SOFTWAREASP D:471 , APC D:2003BINDING SITE FOR RESIDUE MG D 3004
05AC5SOFTWARETYR A:639 , APC A:2000 , HOH A:3015 , U F:8BINDING SITE FOR RESIDUE MG F 3005
06AC6SOFTWARETYR B:639 , APC B:2001 , HOH B:3164BINDING SITE FOR RESIDUE MG B 3006
07AC7SOFTWARETYR C:639 , APC C:2002BINDING SITE FOR RESIDUE MG C 3007
08AC8SOFTWARETYR D:639 , APC D:2003 , U O:8BINDING SITE FOR RESIDUE MG D 3008
09AC9SOFTWARELYS A:472 , TYR A:571 , ARG A:627 , LYS A:631 , ARG A:632 , MET A:635 , THR A:636 , MG A:3001 , HOH A:3005 , HOH A:3015 , HOH A:3048 , HOH A:3217 , HOH A:3238 , DT E:10 , U F:8 , MG F:3005BINDING SITE FOR RESIDUE APC A 2000
10BC1SOFTWARELYS B:472 , ARG B:627 , LYS B:631 , ARG B:632 , MET B:635 , MG B:3002 , MG B:3006 , HOH B:3164 , HOH B:3218 , DT H:10 , DA H:11 , U I:8BINDING SITE FOR RESIDUE APC B 2001
11BC2SOFTWARETYR C:571 , ARG C:627 , LYS C:631 , ARG C:632 , MET C:635 , THR C:636 , MG C:3003 , MG C:3007 , HOH C:3136 , HOH C:3152 , HOH C:3154 , HOH C:3207 , HOH C:3208 , DA K:11 , U L:8BINDING SITE FOR RESIDUE APC C 2002
12BC3SOFTWARELYS D:472 , TYR D:571 , ARG D:627 , LYS D:631 , ARG D:632 , MET D:635 , THR D:636 , MG D:3004 , MG D:3008 , HOH D:3045 , DT N:10 , U O:8BINDING SITE FOR RESIDUE APC D 2003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1S0V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1S0V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1S0V)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_PHAGE_1PS00900 Bacteriophage-type RNA polymerase family active site signature 1.RPOL_BPT7533-544
 
 
 		  4A:533-544
B:533-544
C:533-544
D:533-544
2RNA_POL_PHAGE_2PS00489 Bacteriophage-type RNA polymerase family active site signature 2.RPOL_BPT7625-639
 
 
 		  4A:625-639
B:625-639
C:625-639
D:625-639
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_PHAGE_1PS00900 Bacteriophage-type RNA polymerase family active site signature 1.RPOL_BPT7533-544
 
 
 		  1A:533-544
-
-
-
2RNA_POL_PHAGE_2PS00489 Bacteriophage-type RNA polymerase family active site signature 2.RPOL_BPT7625-639
 
 
 		  1A:625-639
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_PHAGE_1PS00900 Bacteriophage-type RNA polymerase family active site signature 1.RPOL_BPT7533-544
 
 
 		  1-
B:533-544
-
-
2RNA_POL_PHAGE_2PS00489 Bacteriophage-type RNA polymerase family active site signature 2.RPOL_BPT7625-639
 
 
 		  1-
B:625-639
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_PHAGE_1PS00900 Bacteriophage-type RNA polymerase family active site signature 1.RPOL_BPT7533-544
 
 
 		  1-
-
C:533-544
-
2RNA_POL_PHAGE_2PS00489 Bacteriophage-type RNA polymerase family active site signature 2.RPOL_BPT7625-639
 
 
 		  1-
-
C:625-639
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_PHAGE_1PS00900 Bacteriophage-type RNA polymerase family active site signature 1.RPOL_BPT7533-544
 
 
 		  1-
-
-
D:533-544
2RNA_POL_PHAGE_2PS00489 Bacteriophage-type RNA polymerase family active site signature 2.RPOL_BPT7625-639
 
 
 		  1-
-
-
D:625-639

(-) Exons   (0, 0)

(no "Exon" information available for 1S0V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:857
 aligned with RPOL_BPT7 | P00573 from UniProtKB/Swiss-Prot  Length:883

    Alignment length:882
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881  
            RPOL_BPT7     2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA 883
               SCOP domains d1s0va_ A: T7 RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------1s0vA01 A:8-325 T7 RNA polymerase, domain 1                                                                                                                                                                                                                                                                                   1s0vA02 A:326-411  [code=1.10.                287.260, no name defined]               ---------1s0vA03                      1s0vA04 A:450-527  [code=1.10.287.280, no name defined]                       1s0vA03                   1s0vA05 A:554-784 5' to 3' exonuclease, C-terminal subdomain                                                                                                                                                                           1s0vA03 A:421-449,A:528-553,A:785-872  [code=3.30.70.370, no name defined]              ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhh.......hhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh..eeeeee........eeeeeehhhhhhhhhhhhhhhh...................eee.........ee.....hhhhhhh.....hhhhhhhhhhhhhheeeehhhhhhhhhhhhhhh..........----------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee..eee.....eee........hhhhhh.eee.....hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh..hhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.....eee..........eee..hhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh................eeee.....eeee..eee..............---------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_PHAG--------------------------------------------------------------------------------RNA_POL_PHAGE_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s0v A   2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAI----------------EALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFR---------DSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA 883
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351   |     -         -|      381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751    |    -    |  771       781       791       801       811       821       831       841       851       861       871       881  
                                                                                                                                                                                                                                                                                                                                                                                           355              372                                                                                                                                                                                                                                                                                                                                                                                             756       766                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:857
 aligned with RPOL_BPT7 | P00573 from UniProtKB/Swiss-Prot  Length:883

    Alignment length:882
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881  
            RPOL_BPT7     2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA 883
               SCOP domains d1s0vb_ B: T7 RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------1s0vB01 B:8-325 T7 RNA polymerase, domain 1                                                                                                                                                                                                                                                                                   1s0vB02 B:326-411  [code=1.10.                287.260, no name defined]               ---------1s0vB03                      1s0vB04 B:450-527  [code=1.10.287.280, no name defined]                       1s0vB03                   1s0vB05 B:554-784 5' to 3' exonuclease, C-terminal subdomain                                                                                                                                                                           1s0vB03 B:421-449,B:528-553,B:785-872  [code=3.30.70.370, no name defined]              ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh....eeee............eeeehhhhhhhhhhhhhhhh......................................hhhhhhh.....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..........----------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................hhhhhhhh.....ee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...ee...eeee..hhhhhhhhhhh.hhhhhh...........hhhhhhhhhhhhhhhhhh........eeee......eeee...hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh................eeee.....eeee..eee..............---------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_PHAG--------------------------------------------------------------------------------RNA_POL_PHAGE_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s0v B   2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAI----------------EALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFR---------DSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA 883
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351   |     -         -|      381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751    |    -    |  771       781       791       801       811       821       831       841       851       861       871       881  
                                                                                                                                                                                                                                                                                                                                                                                           355              372                                                                                                                                                                                                                                                                                                                                                                                             756       766                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:857
 aligned with RPOL_BPT7 | P00573 from UniProtKB/Swiss-Prot  Length:883

    Alignment length:882
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881  
            RPOL_BPT7     2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA 883
               SCOP domains d1s0vc_ C: T7 RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------1s0vC01 C:8-325 T7 RNA polymerase, domain 1                                                                                                                                                                                                                                                                                   1s0vC02 C:326-411  [code=1.10.                287.260, no name defined]               ---------1s0vC03                      1s0vC04 C:450-527  [code=1.10.287.280, no name defined]                       1s0vC03                   1s0vC05 C:554-784 5' to 3' exonuclease, C-terminal subdomain                                                                                                                                                                           1s0vC03 C:421-449,C:528-553,C:785-872  [code=3.30.70.370, no name defined]              ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhh........hhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh.hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh..ee..ee........ee..eehhhhhhhhhhhhhhhhh.....................................hhhhhhh.....hhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhh..........----------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............................hhhhhhheee...eehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhh.ee...eeee..hhhhhhhhhh..hhhhhhhh.........hhhhhhhhhhhhhhhhhhhh.....eeeee......eeeee..hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh................eeee.....eeee..eee..............---------.eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_PHAG--------------------------------------------------------------------------------RNA_POL_PHAGE_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s0v C   2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAI----------------EALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFR---------DSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA 883
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351   |     -         -|      381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751    |    -    |  771       781       791       801       811       821       831       841       851       861       871       881  
                                                                                                                                                                                                                                                                                                                                                                                           355              372                                                                                                                                                                                                                                                                                                                                                                                             756       766                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:857
 aligned with RPOL_BPT7 | P00573 from UniProtKB/Swiss-Prot  Length:883

    Alignment length:882
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881  
            RPOL_BPT7     2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA 883
               SCOP domains d1s0vd_ D: T7 RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------1s0vD01 D:8-325 T7 RNA polymerase, domain 1                                                                                                                                                                                                                                                                                   1s0vD02 D:326-411  [code=1.10.                287.260, no name defined]               ---------1s0vD03                      1s0vD04 D:450-527  [code=1.10.287.280, no name defined]                       1s0vD03                   1s0vD05 D:554-784 5' to 3' exonuclease, C-terminal subdomain                                                                                                                                                                           1s0vD03 D:421-449,D:528-553,D:785-872  [code=3.30.70.370, no name defined]              ----------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                -----------------------------------------------------------------------------RNA_pol-1s0vD01 D:449-882                                                                                                                                                                                                                                                                                                                                                                                                                         - Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                -----------------------------------------------------------------------------RNA_pol-1s0vD02 D:449-882                                                                                                                                                                                                                                                                                                                                                                                                                         - Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                -----------------------------------------------------------------------------RNA_pol-1s0vD03 D:449-882                                                                                                                                                                                                                                                                                                                                                                                                                         - Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------                -----------------------------------------------------------------------------RNA_pol-1s0vD04 D:449-882                                                                                                                                                                                                                                                                                                                                                                                                                         - Pfam domains (4)
         Sec.struct. author ......hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh..ee................eehhhhhhhhhhhhhhhhh.....................................hhhhhhh.....hhhhhhhhhhhh...eeehhhhhhhhhhhh.............----------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................................eee...eehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...ee...eeee..hhhhhhhhhhh.hhhhhhhh.........hhhhhhhhhhhhhhhhhhhh....eeeeee......eeeeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh................eeee.....eeee..eee..............---------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......ee...eeeehhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh............hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_PHAG--------------------------------------------------------------------------------RNA_POL_PHAGE_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s0v D   2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAI----------------EALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFR---------DSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA 883
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351   |     -         -|      381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751    |    -    |  771       781       791       801       811       821       831       841       851       861       871       881  
                                                                                                                                                                                                                                                                                                                                                                                           355              372                                                                                                                                                                                                                                                                                                                                                                                             756       766                                                                                                                     


Chain E from PDB  Type:DNA  Length:17
                                                 
                 1s0v E   2 GGAATCGATATCGCCGC  18
                                    11       


Chain F from PDB  Type:RNA  Length:8
                                        
                 1s0v F   1 GCGGCGAU   8


Chain G from PDB  Type:DNA  Length:9
                                         
                 1s0v G   1 GTCGATTCC   9


Chain H from PDB  Type:DNA  Length:17
                                                 
                 1s0v H   2 GGAATCGATATCGCCGC  18
                                    11       


Chain I from PDB  Type:RNA  Length:8
                                        
                 1s0v I   1 GCGGCGAU   8


Chain J from PDB  Type:DNA  Length:9
                                         
                 1s0v J   1 GTCGATTCC   9


Chain K from PDB  Type:DNA  Length:17
                                                 
                 1s0v K   2 GGAATCGATATCGCCGC  18
                                    11       


Chain L from PDB  Type:RNA  Length:8
                                        
                 1s0v L   1 GCGGCGAU   8


Chain M from PDB  Type:DNA  Length:9
                                         
                 1s0v M   1 GTCGATTCC   9


Chain N from PDB  Type:DNA  Length:17
                                                 
                 1s0v N   2 GGAATCGATATCGCCGC  18
                                    11       


Chain O from PDB  Type:RNA  Length:8
                                        
                 1s0v O   1 GCGGCGAU   8


Chain P from PDB  Type:DNA  Length:9
                                         
                 1s0v P   1 GTCGATTCC   9
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (5, 20)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Alpha-Beta Plaits (1688)
(-)
Homologous Superfamily: [code=3.30.70.370, no name defined] (99)
(-)
[unclassified] (84)
1a1s0vA03A:421-449,A:528-553,A:785-872
1b1s0vB03B:421-449,B:528-553,B:785-872
1c1s0vC03C:421-449,C:528-553,C:785-872
1d1s0vD03D:421-449,D:528-553,D:785-872
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: RNA_pol] (7)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RPOL_BPT7 | P00573)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0039695    DNA-templated viral transcription    A transcription process that uses a viral DNA as a template.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  1s0v
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  RPOL_BPT7 | P00573
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  2.7.7.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPOL_BPT7 | P00573: 1aro 1cez 1h38 1msw 1qln 1s76 1s77 2pi4 2pi5 3e2e 3e3j 4rnp

(-) Related Entries Specified in the PDB File

1h38 STRUCTURE OF A T7 RNA POLYMERASE ELONGATION COMPLEX AT 2.9A RESOLUTION RELATED ID: TRT001000257.2 RELATED DB: TARGETDB