Chain A from PDB Type:PROTEIN Length:66
aligned with NARL_ECO57 | P0AF30 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECO57 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8a_ A: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8A00 A:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------ PROSITE (2)
PROSITE (3) -------------------HTH_LUXR_1 PDB: A:170-197 ------------------- PROSITE (3)
Transcript ------------------------------------------------------------------ Transcript
1je8 A 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain A from PDB Type:PROTEIN Length:66
aligned with NARL_ECOL6 | P0AF29 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECOL6 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8a_ A: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8A00 A:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) -------------------HTH_LUXR_1 PDB: A:170-197 ------------------- PROSITE (2)
Transcript ------------------------------------------------------------------ Transcript
1je8 A 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain A from PDB Type:PROTEIN Length:66
aligned with NARL_ECOLI | P0AF28 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECOLI 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8a_ A: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8A00 A:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE -------------------HTH_LUXR_1 PDB: A:170-197 ------------------- PROSITE
Transcript ------------------------------------------------------------------ Transcript
1je8 A 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain A from PDB Type:PROTEIN Length:66
aligned with NARL_SHIFL | P0AF31 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_SHIFL 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8a_ A: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8A00 A:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------ PROSITE (2)
PROSITE (3) ------------------------------------------------------------------ PROSITE (3)
PROSITE (4) -------------------HTH_LUXR_1 PDB: A:170-197 ------------------- PROSITE (4)
Transcript ------------------------------------------------------------------ Transcript
1je8 A 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain B from PDB Type:PROTEIN Length:66
aligned with NARL_ECO57 | P0AF30 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECO57 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8b_ B: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8B00 B:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------ PROSITE (2)
PROSITE (3) -------------------HTH_LUXR_1 PDB: B:170-197 ------------------- PROSITE (3)
Transcript ------------------------------------------------------------------ Transcript
1je8 B 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain B from PDB Type:PROTEIN Length:66
aligned with NARL_ECOL6 | P0AF29 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECOL6 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8b_ B: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8B00 B:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) -------------------HTH_LUXR_1 PDB: B:170-197 ------------------- PROSITE (2)
Transcript ------------------------------------------------------------------ Transcript
1je8 B 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain B from PDB Type:PROTEIN Length:66
aligned with NARL_ECOLI | P0AF28 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECOLI 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8b_ B: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8B00 B:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE -------------------HTH_LUXR_1 PDB: B:170-197 ------------------- PROSITE
Transcript ------------------------------------------------------------------ Transcript
1je8 B 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain B from PDB Type:PROTEIN Length:66
aligned with NARL_SHIFL | P0AF31 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_SHIFL 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8b_ B: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8B00 B:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------ PROSITE (2)
PROSITE (3) ------------------------------------------------------------------ PROSITE (3)
PROSITE (4) -------------------HTH_LUXR_1 PDB: B:170-197 ------------------- PROSITE (4)
Transcript ------------------------------------------------------------------ Transcript
1je8 B 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain C from PDB Type:DNA Length:20
1je8 C 1 CGTACCCATTAATGGGTACG 20
10 20
Chain D from PDB Type:DNA Length:20
1je8 D 21 CGTACCCATTAATGGGTACG 40
30 40
Chain E from PDB Type:PROTEIN Length:67
aligned with NARL_ECO57 | P0AF30 from UniProtKB/Swiss-Prot Length:216
Alignment length:67
159 169 179 189 199 209
NARL_ECO57 150 ERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8e_ E: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8E00 E:150-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------- PROSITE (2)
PROSITE (3) --------------------HTH_LUXR_1 PDB: E:170-197 ------------------- PROSITE (3)
Transcript ------------------------------------------------------------------- Transcript
1je8 E 150 ERDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
159 169 | 179 189 | 199 209
175-MSE 194-MSE
198-MSE
Chain E from PDB Type:PROTEIN Length:67
aligned with NARL_ECOL6 | P0AF29 from UniProtKB/Swiss-Prot Length:216
Alignment length:67
159 169 179 189 199 209
NARL_ECOL6 150 ERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8e_ E: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8E00 E:150-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) --------------------HTH_LUXR_1 PDB: E:170-197 ------------------- PROSITE (2)
Transcript ------------------------------------------------------------------- Transcript
1je8 E 150 ERDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
159 169 | 179 189 | 199 209
175-MSE 194-MSE
198-MSE
Chain E from PDB Type:PROTEIN Length:67
aligned with NARL_ECOLI | P0AF28 from UniProtKB/Swiss-Prot Length:216
Alignment length:67
159 169 179 189 199 209
NARL_ECOLI 150 ERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8e_ E: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8E00 E:150-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------HTH_LUXR_1 PDB: E:170-197 ------------------- PROSITE
Transcript ------------------------------------------------------------------- Transcript
1je8 E 150 ERDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
159 169 | 179 189 | 199 209
175-MSE 194-MSE
198-MSE
Chain E from PDB Type:PROTEIN Length:67
aligned with NARL_SHIFL | P0AF31 from UniProtKB/Swiss-Prot Length:216
Alignment length:67
159 169 179 189 199 209
NARL_SHIFL 150 ERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8e_ E: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8E00 E:150-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------- PROSITE (2)
PROSITE (3) ------------------------------------------------------------------- PROSITE (3)
PROSITE (4) --------------------HTH_LUXR_1 PDB: E:170-197 ------------------- PROSITE (4)
Transcript ------------------------------------------------------------------- Transcript
1je8 E 150 ERDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
159 169 | 179 189 | 199 209
175-MSE 194-MSE
198-MSE
Chain F from PDB Type:PROTEIN Length:66
aligned with NARL_ECO57 | P0AF30 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECO57 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8f_ F: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8F00 F:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains (1) --GerE-1je8F01 F:153-210 ------ Pfam domains (1)
Pfam domains (2) --GerE-1je8F02 F:153-210 ------ Pfam domains (2)
Pfam domains (3) --GerE-1je8F03 F:153-210 ------ Pfam domains (3)
Pfam domains (4) --GerE-1je8F04 F:153-210 ------ Pfam domains (4)
Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------ PROSITE (2)
PROSITE (3) -------------------HTH_LUXR_1 PDB: F:170-197 ------------------- PROSITE (3)
Transcript ------------------------------------------------------------------ Transcript
1je8 F 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain F from PDB Type:PROTEIN Length:66
aligned with NARL_ECOL6 | P0AF29 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECOL6 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8f_ F: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8F00 F:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains (1) --GerE-1je8F01 F:153-210 ------ Pfam domains (1)
Pfam domains (2) --GerE-1je8F02 F:153-210 ------ Pfam domains (2)
Pfam domains (3) --GerE-1je8F03 F:153-210 ------ Pfam domains (3)
Pfam domains (4) --GerE-1je8F04 F:153-210 ------ Pfam domains (4)
Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) -------------------HTH_LUXR_1 PDB: F:170-197 ------------------- PROSITE (2)
Transcript ------------------------------------------------------------------ Transcript
1je8 F 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain F from PDB Type:PROTEIN Length:66
aligned with NARL_ECOLI | P0AF28 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_ECOLI 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8f_ F: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8F00 F:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains (1) --GerE-1je8F01 F:153-210 ------ Pfam domains (1)
Pfam domains (2) --GerE-1je8F02 F:153-210 ------ Pfam domains (2)
Pfam domains (3) --GerE-1je8F03 F:153-210 ------ Pfam domains (3)
Pfam domains (4) --GerE-1je8F04 F:153-210 ------ Pfam domains (4)
Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE -------------------HTH_LUXR_1 PDB: F:170-197 ------------------- PROSITE
Transcript ------------------------------------------------------------------ Transcript
1je8 F 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain F from PDB Type:PROTEIN Length:66
aligned with NARL_SHIFL | P0AF31 from UniProtKB/Swiss-Prot Length:216
Alignment length:66
160 170 180 190 200 210
NARL_SHIFL 151 RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF 216
SCOP domains d1je8f_ F: Nitrate/nitrite response regulator (NarL) SCOP domains
CATH domains 1je8F00 F:151-216 'winged helix' repressor DNA binding domain CATH domains
Pfam domains (1) --GerE-1je8F01 F:153-210 ------ Pfam domains (1)
Pfam domains (2) --GerE-1je8F02 F:153-210 ------ Pfam domains (2)
Pfam domains (3) --GerE-1je8F03 F:153-210 ------ Pfam domains (3)
Pfam domains (4) --GerE-1je8F04 F:153-210 ------ Pfam domains (4)
Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------ PROSITE (2)
PROSITE (3) ------------------------------------------------------------------ PROSITE (3)
PROSITE (4) -------------------HTH_LUXR_1 PDB: F:170-197 ------------------- PROSITE (4)
Transcript ------------------------------------------------------------------ Transcript
1je8 F 151 RDVNQLTPRERDILKLIAQGLPNKmIARRLDITESTVKVHVKHmLKKmKLKSRVEAAVWVHQERIF 216
160 170 | 180 190 | 200 210
175-MSE 194-MSE
198-MSE
Chain G from PDB Type:DNA Length:20
1je8 G 1 CGTACCCATTAATGGGTACG 20
10 20
Chain H from PDB Type:DNA Length:20
1je8 H 21 CGTACCCATTAATGGGTACG 40
30 40
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |