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(-) Description

Title :  PAX5(1-149)+ETS-1(331-440)+DNA
 
Authors :  C. W. Garvie, J. Hagman, C. Wolberger
Date :  18 Oct 01  (Deposition) - 04 Jan 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A,B,C,D,I  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Paired Domain, Ets Domain, Transcription Factor, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. W. Garvie, J. Hagman, C. Wolberger
Structural Studies Of Ets-1/Pax5 Complex Formation On Dna.
Mol. Cell V. 8 1267 2001
PubMed-ID: 11779502  |  Reference-DOI: 10.1016/S1097-2765(01)00410-5
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER
    ChainsC, G
    EngineeredYES
    SyntheticYES
 
Molecule 2 - PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER
    ChainsD, H
    EngineeredYES
    SyntheticYES
 
Molecule 3 - PAIRED BOX PROTEIN PAX5
    ChainsA, E, I
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET11A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentPAIRED DOMAIN
    GenePAX5
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 4 - C-ETS-1 PROTEIN
    ChainsB, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET11A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentETS DOMAIN
    GeneETS-1
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit ABCDEFGHI
Biological Unit 1 (1x)ABCD    I
Biological Unit 2 (1x)    EFGH 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1K78)

(-) Sites  (0, 0)

(no "Site" information available for 1K78)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1K78)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1K78)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (9, 19)

Asymmetric Unit (9, 19)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_070672G24RPAX5_HUMANPolymorphism868494257A/EG24R
2UniProtVAR_070673V26GPAX5_HUMANPolymorphism  ---A/EV26G
3UniProtVAR_070674P34QPAX5_HUMANPolymorphism  ---A/EP34Q
4UniProtVAR_070675D53VPAX5_HUMANPolymorphism  ---A/ED53V
5UniProtVAR_070676R59GPAX5_HUMANPolymorphism  ---A/ER59G
6UniProtVAR_070677S66NPAX5_HUMANPolymorphism  ---A/ES66N
7UniProtVAR_070678T75RPAX5_HUMANPolymorphism  ---A/ET75R
8UniProtVAR_070679P80RPAX5_HUMANPolymorphism  ---A/EP80R
9UniProtVAR_070680I139TPAX5_HUMANPolymorphism  ---A/E/II139T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (9, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_070672G24RPAX5_HUMANPolymorphism868494257AG24R
2UniProtVAR_070673V26GPAX5_HUMANPolymorphism  ---AV26G
3UniProtVAR_070674P34QPAX5_HUMANPolymorphism  ---AP34Q
4UniProtVAR_070675D53VPAX5_HUMANPolymorphism  ---AD53V
5UniProtVAR_070676R59GPAX5_HUMANPolymorphism  ---AR59G
6UniProtVAR_070677S66NPAX5_HUMANPolymorphism  ---AS66N
7UniProtVAR_070678T75RPAX5_HUMANPolymorphism  ---AT75R
8UniProtVAR_070679P80RPAX5_HUMANPolymorphism  ---AP80R
9UniProtVAR_070680I139TPAX5_HUMANPolymorphism  ---A/II139T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (9, 9)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_070672G24RPAX5_HUMANPolymorphism868494257EG24R
2UniProtVAR_070673V26GPAX5_HUMANPolymorphism  ---EV26G
3UniProtVAR_070674P34QPAX5_HUMANPolymorphism  ---EP34Q
4UniProtVAR_070675D53VPAX5_HUMANPolymorphism  ---ED53V
5UniProtVAR_070676R59GPAX5_HUMANPolymorphism  ---ER59G
6UniProtVAR_070677S66NPAX5_HUMANPolymorphism  ---ES66N
7UniProtVAR_070678T75RPAX5_HUMANPolymorphism  ---ET75R
8UniProtVAR_070679P80RPAX5_HUMANPolymorphism  ---EP80R
9UniProtVAR_070680I139TPAX5_HUMANPolymorphism  ---EI139T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 8)

Asymmetric Unit (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PAIRED_1PS00034 Paired domain signature.PAX5_HUMAN50-66
 
  2A:50-66
E:50-66
2ETS_DOMAIN_3PS50061 Ets-domain profile.ETS1_MOUSE335-415
 
  2B:335-415
F:335-415
3ETS_DOMAIN_1PS00345 Ets-domain signature 1.ETS1_MOUSE337-345
 
  2B:337-345
F:337-345
4ETS_DOMAIN_2PS00346 Ets-domain signature 2.ETS1_MOUSE381-396
 
  2B:381-396
F:381-396
Biological Unit 1 (4, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PAIRED_1PS00034 Paired domain signature.PAX5_HUMAN50-66
 
  1A:50-66
-
2ETS_DOMAIN_3PS50061 Ets-domain profile.ETS1_MOUSE335-415
 
  1B:335-415
-
3ETS_DOMAIN_1PS00345 Ets-domain signature 1.ETS1_MOUSE337-345
 
  1B:337-345
-
4ETS_DOMAIN_2PS00346 Ets-domain signature 2.ETS1_MOUSE381-396
 
  1B:381-396
-
Biological Unit 2 (4, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PAIRED_1PS00034 Paired domain signature.PAX5_HUMAN50-66
 
  1-
E:50-66
2ETS_DOMAIN_3PS50061 Ets-domain profile.ETS1_MOUSE335-415
 
  1-
F:335-415
3ETS_DOMAIN_1PS00345 Ets-domain signature 1.ETS1_MOUSE337-345
 
  1-
F:337-345
4ETS_DOMAIN_2PS00346 Ets-domain signature 2.ETS1_MOUSE381-396
 
  1-
F:381-396

(-) Exons   (3, 8)

Asymmetric Unit (3, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003581271aENSE00001927054chr9:37034103-37033983121PAX5_HUMAN1-16160--
1.3ENST000003581273ENSE00001700848chr9:37020798-37020633166PAX5_HUMAN16-71562A:19-71
E:19-71
-
53
53
-
1.4ENST000003581274ENSE00001800669chr9:37015191-37014994198PAX5_HUMAN71-137673A:71-137
E:71-137
I:84-137
67
67
54
1.5ENST000003581275ENSE00001662228chr9:37006534-3700647065PAX5_HUMAN137-159233A:137-142
E:137-142
I:137-141
6
6
5
1.6bENST000003581276bENSE00001148776chr9:37002773-37002645129PAX5_HUMAN159-202440--
1.7aENST000003581277aENSE00001148771chr9:36966721-36966546176PAX5_HUMAN202-260590--
1.11aENST0000035812711aENSE00000928305chr9:36923481-36923352130PAX5_HUMAN261-304440--
1.12ENST0000035812712ENSE00001636100chr9:36882102-36882001102PAX5_HUMAN304-338350--
1.13ENST0000035812713ENSE00001754297chr9:36846926-3684684087PAX5_HUMAN338-367300--
1.14dENST0000035812714dENSE00001860138chr9:36840633-368332727362PAX5_HUMAN367-391250--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:124
 aligned with PAX5_HUMAN | Q02548 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:124
                                    28        38        48        58        68        78        88        98       108       118       128       138    
           PAX5_HUMAN    19 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142
               SCOP domains d1k78a1 A:19-81 Pax-5                                          d1k78a2 A:82-142 Pax-5                                        SCOP domains
               CATH domains 1k78A01 A:19-84 'winged helix' repressor DNA binding domain       1k78A02 A:85-139                                       --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eee...eee.......hhhhhhhhhhhhh...hhhhhhhh...hhhhhhhhhhhhhh.................hhhhhhhhhhhhh.....hhhhhhhhhhh..........hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -----R-G-------Q------------------V-----G------N--------R----R----------------------------------------------------------T--- SAPs(SNPs)
                    PROSITE -------------------------------PAIRED_1         ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: A:19-71 UniProt: 16-71 [INCOMPLETE]   -----------------------------------------------------------------1.5    Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------Exon 1.4  PDB: A:71-137 UniProt: 71-137                            ----- Transcript 1 (2)
                 1k78 A  19 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142
                                    28        38        48        58        68        78        88        98       108       118       128       138    

Chain B from PDB  Type:PROTEIN  Length:102
 aligned with ETS1_MOUSE | P27577 from UniProtKB/Swiss-Prot  Length:440

    Alignment length:102
                                   344       354       364       374       384       394       404       414       424       434  
           ETS1_MOUSE   335 IQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVK 436
               SCOP domains d1k78b_ B: ETS-1 transcription factor, residues 331-440                                                SCOP domains
               CATH domains 1k78B00 B:335-436 'winged helix' repressor DNA binding domain                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhh.......eee.....eee...hhhhhhhhhhhh......hhhhhhhhhhh.....eee......eeee...hhhhh...hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ETS_DOMAIN_3  PDB: B:335-415 UniProt: 335-415                                    --------------------- PROSITE (1)
                PROSITE (2) --ETS_DOMAI-----------------------------------ETS_DOMAIN_2    ---------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1k78 B 335 IQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVK 436
                                   344       354       364       374       384       394       404       414       424       434  

Chain C from PDB  Type:DNA  Length:27
                                                           
                 1k78 C   1 TTGTGCCGGAGATGGGCTCCAGTGGCC  27
                                    10        20       

Chain D from PDB  Type:DNA  Length:27
                                                           
                 1k78 D   1 AAGGCCACTGGAGCCCATCTCCGGCAC  27
                                    10        20       

Chain E from PDB  Type:PROTEIN  Length:124
 aligned with PAX5_HUMAN | Q02548 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:124
                                    28        38        48        58        68        78        88        98       108       118       128       138    
           PAX5_HUMAN    19 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142
               SCOP domains d1k78e1 E:19-81 Pax-5                                          d1k78e2 E:82-142 Pax-5                                        SCOP domains
               CATH domains 1k78E01 E:19-84 'winged helix' repressor DNA binding domain       1k78E02 E:85-138                                      ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eee...eee.......hhhhhhhhhhhhh...hhhhhhhh...hhhhhhhhhhhhhh.................hhhhhhhhhhhhh.....hhhhhhhhhhh..........hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -----R-G-------Q------------------V-----G------N--------R----R----------------------------------------------------------T--- SAPs(SNPs)
                    PROSITE -------------------------------PAIRED_1         ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: E:19-71 UniProt: 16-71 [INCOMPLETE]   -----------------------------------------------------------------1.5    Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------Exon 1.4  PDB: E:71-137 UniProt: 71-137                            ----- Transcript 1 (2)
                 1k78 E  19 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142
                                    28        38        48        58        68        78        88        98       108       118       128       138    

Chain F from PDB  Type:PROTEIN  Length:103
 aligned with ETS1_MOUSE | P27577 from UniProtKB/Swiss-Prot  Length:440

    Alignment length:103
                                   343       353       363       373       383       393       403       413       423       433   
           ETS1_MOUSE   334 PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVK 436
               SCOP domains d1k78f_ F: ETS-1 transcription factor, residues 331-440                                                 SCOP domains
               CATH domains 1k78F00 F:334-436 'winged helix' repressor DNA binding domain                                           CATH domains
           Pfam domains (1) Ets-1k78F01 F:334-417                                                               ------------------- Pfam domains (1)
           Pfam domains (2) Ets-1k78F02 F:334-417                                                               ------------------- Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhh.......eee.....eee.....................hhhhhhhhhhh.....eee......eeee...hhhhh...hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ETS_DOMAIN_3  PDB: F:335-415 UniProt: 335-415                                    --------------------- PROSITE (1)
                PROSITE (2) ---ETS_DOMAI-----------------------------------ETS_DOMAIN_2    ---------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1k78 F 334 PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVK 436
                                   343       353       363       373       383       393       403       413       423       433   

Chain G from PDB  Type:DNA  Length:27
                                                           
                 1k78 G   1 TTGTGCCGGAGATGGGCTCCAGTGGCC  27
                                    10        20       

Chain H from PDB  Type:DNA  Length:27
                                                           
                 1k78 H   1 AAGGCCACTGGAGCCCATCTCCGGCAC  27
                                    10        20       

Chain I from PDB  Type:PROTEIN  Length:58
 aligned with PAX5_HUMAN | Q02548 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:58
                                    93       103       113       123       133        
           PAX5_HUMAN    84 GGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 141
               SCOP domains d1k78i1 I:84-141 Pax-5                                     SCOP domains
               CATH domains 1k78I00 I:84-141                                           CATH domains
           Pfam domains (1) PAX-1k78I01 I:84-140                                     - Pfam domains (1)
           Pfam domains (2) PAX-1k78I02 I:84-140                                     - Pfam domains (2)
           Pfam domains (3) PAX-1k78I03 I:84-140                                     - Pfam domains (3)
         Sec.struct. author .........hhhhhhhhhhhhh.....hhhhhhhhhhh..........hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------T-- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
           Transcript 1 (1) -----------------------------------------------------1.5   Transcript 1 (1)
           Transcript 1 (2) Exon 1.4  PDB: I:84-137 UniProt: 71-137 [INCOMPLETE]  ---- Transcript 1 (2)
                 1k78 I  84 GGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 141
                                    93       103       113       123       133        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 7)

Asymmetric Unit

(-) CATH Domains  (1, 7)

Asymmetric Unit

(-) Pfam Domains  (2, 5)

Asymmetric Unit
(-)
Clan: HTH (544)
(-)
Family: Ets (14)
1aEts-1k78F01F:334-417
1bEts-1k78F02F:334-417
(-)
Family: PAX (4)
2aPAX-1k78I01I:84-140
2bPAX-1k78I02I:84-140
2cPAX-1k78I03I:84-140

(-) Gene Ontology  (62, 71)

Asymmetric Unit(hide GO term definitions)
Chain A,E,I   (PAX5_HUMAN | Q02548)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0001077    transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
biological process
    GO:0030534    adult behavior    Behavior in a fully developed and mature organism.
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0009887    animal organ morphogenesis    Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0021987    cerebral cortex development    The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
    GO:0048701    embryonic cranial skeleton morphogenesis    The process in which the anatomical structures of the cranial skeleton are generated and organized during the embryonic phase.
    GO:0006959    humoral immune response    An immune response mediated through a body fluid.
    GO:0021670    lateral ventricle development    The process whose specific outcome is the progression of the lateral ventricles over time, from the formation to the mature structure. The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0051573    negative regulation of histone H3-K9 methylation    Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0035914    skeletal muscle cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of a skeletal muscle cell, a somatic cell located in skeletal muscle.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,F   (ETS1_MOUSE | P27577)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000981    RNA polymerase II transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0035035    histone acetyltransferase binding    Interacting selectively and non-covalently with the enzyme histone acetyltransferase.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0030578    PML body organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of PML bodies, a class of nuclear body; they react against SP100 auto-antibodies (PML = promyelocytic leukemia).
    GO:0060055    angiogenesis involved in wound healing    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to a damaged tissue, following an injury.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0048870    cell motility    Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
    GO:0070301    cellular response to hydrogen peroxide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
    GO:0044849    estrous cycle    A type of ovulation cycle, which occurs in most mammalian therian females, where the endometrium is resorbed if pregnancy does not occur.
    GO:0007565    female pregnancy    The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth.
    GO:0021854    hypothalamus development    The progression of the hypothalamus region of the forebrain, from its initial formation to its mature state.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045786    negative regulation of cell cycle    Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle.
    GO:0050728    negative regulation of inflammatory response    Any process that stops, prevents, or reduces the frequency, rate or extent of the inflammatory response.
    GO:0021983    pituitary gland development    The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:0030335    positive regulation of cell migration    Any process that activates or increases the frequency, rate or extent of cell migration.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0051272    positive regulation of cellular component movement    Any process that activates or increases the frequency, rate or extent of the movement of a cellular component.
    GO:0010595    positive regulation of endothelial cell migration    Any process that increases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
    GO:0045648    positive regulation of erythrocyte differentiation    Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation.
    GO:0050729    positive regulation of inflammatory response    Any process that activates or increases the frequency, rate or extent of the inflammatory response.
    GO:1904996    positive regulation of leukocyte adhesion to vascular endothelial cell    Any process that activates or increases the frequency, rate or extent of leukocyte adhesion to vascular endothelial cell.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0045765    regulation of angiogenesis    Any process that modulates the frequency, rate or extent of angiogenesis.
    GO:0042981    regulation of apoptotic process    Any process that modulates the occurrence or rate of cell death by apoptotic process.
    GO:0010715    regulation of extracellular matrix disassembly    Any process that modulates the rate, frequency or extent of extracellular matrix disassembly. Extracellular matrix disassembly is a process that results in the breakdown of the extracellular matrix.
    GO:0006357    regulation of transcription from RNA polymerase II promoter    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0032355    response to estradiol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
    GO:0001666    response to hypoxia    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0070555    response to interleukin-1    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus.
    GO:0034616    response to laminar fluid shear stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a laminar fluid shear stress stimulus. Laminar fluid flow is the force acting on an object in a system where the fluid is moving across a solid surface in parallel layers. As an example, laminar shear stress can be seen where blood flows against the luminal side of blood vessel walls.
    GO:0009612    response to mechanical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
    GO:0009611    response to wounding    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ETS1_MOUSE | P275771k79 1k7a 1md0 1mdm 1r36 2jv3 2kmd
        PAX5_HUMAN | Q025481mdm

(-) Related Entries Specified in the PDB File

1k79 ETS-1(331-440)+GGAA DUPLEX
1k7a ETS-1(331-440)+GGAG DUPLEX