Chain A from PDB Type:PROTEIN Length:145
aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot Length:605
Alignment length:145
168 178 188 198 208 218 228 238 248 258 268 278 288 298
VE1_BPV1 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANTLNVREECLMLQPAKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
SCOP domains d1ksxa_ A: Replication initiation protein E1 SCOP domains
CATH domains 1ksxA00 A:159-303 [code=3.40.1310.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhh..hhhhh.........eeeeeeeee..hhhhhhhhhhhhhh.eeeeeeeeeee..eeeeeeeeeeeeeehhhhhhhhhhhhhh.hhh.eeee.....hhhhhhhhhhhhhh...eee...hhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ksx A 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
168 178 188 198 208 218 228 238 248 258 268 278 288 298
Chain B from PDB Type:PROTEIN Length:145
aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot Length:605
Alignment length:145
168 178 188 198 208 218 228 238 248 258 268 278 288 298
VE1_BPV1 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANTLNVREECLMLQPAKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
SCOP domains d1ksxb_ B: Replication initiation protein E1 SCOP domains
CATH domains 1ksxB00 B:159-303 [code=3.40.1310.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhh.hhhhhh........eeeeeeeeee..hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeeeeeeeeehhhhhhhhhhhhh.hhh.eeee.....hhhhhhhhhhhh.....eee...hhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ksx B 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
168 178 188 198 208 218 228 238 248 258 268 278 288 298
Chain C from PDB Type:DNA Length:21
1ksx C 1 ATAATTGTTGTTAACAACAAT 21
10 20
Chain E from PDB Type:PROTEIN Length:145
aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot Length:605
Alignment length:145
168 178 188 198 208 218 228 238 248 258 268 278 288 298
VE1_BPV1 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANTLNVREECLMLQPAKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
SCOP domains d1ksxe_ E: Replication initiation protein E1 SCOP domains
CATH domains 1ksxE00 E:159-303 [code=3.40.1310.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhh..hhhhh.........eeeeeeeee..hhhhhhhhhhhhhh.eeeeeeeeeee..eeeeeeeeeeeeeehhhhhhhhhhhhhh.hhh.eeee.....hhhhhhhhhhhhhh...eee...hhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ksx E 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
168 178 188 198 208 218 228 238 248 258 268 278 288 298
Chain F from PDB Type:PROTEIN Length:145
aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot Length:605
Alignment length:145
168 178 188 198 208 218 228 238 248 258 268 278 288 298
VE1_BPV1 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANTLNVREECLMLQPAKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
SCOP domains d1ksxf_ F: Replication initiation protein E1 SCOP domains
CATH domains 1ksxF00 F:159-303 [code=3.40.1310.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhh.hhhhhh........eeeeeeeeee..hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeeeeeeeeehhhhhhhhhhhhh.hhh.eeee.....hhhhhhhhhhhh.....eee...hhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ksx F 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
168 178 188 198 208 218 228 238 248 258 268 278 288 298
Chain G from PDB Type:DNA Length:21
1ksx G 1 ATAATTGTTGTTAACAACAAT 21
10 20
Chain I from PDB Type:PROTEIN Length:145
aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot Length:605
Alignment length:145
168 178 188 198 208 218 228 238 248 258 268 278 288 298
VE1_BPV1 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANTLNVREECLMLQPAKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
SCOP domains d1ksxi_ I: Replication initiation protein E1 SCOP domains
CATH domains 1ksxI00 I:159-303 [code=3.40.1310.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhh..hhhhh.........eeeeeeeee..hhhhhhhhhhhhhh.eeeeeeeeeee..eeeeeeeeeeeeeehhhhhhhhhhhhhh.hhh.eeee.....hhhhhhhhhhhhhh...eee...hhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ksx I 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
168 178 188 198 208 218 228 238 248 258 268 278 288 298
Chain J from PDB Type:PROTEIN Length:145
aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot Length:605
Alignment length:145
168 178 188 198 208 218 228 238 248 258 268 278 288 298
VE1_BPV1 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANTLNVREECLMLQPAKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
SCOP domains d1ksxj_ J: Replication initiation protein E1 SCOP domains
CATH domains 1ksxJ00 J:159-303 [code=3.40.1310.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhh.hhhhhh........eeeeeeeeee..hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeeeeeeeeehhhhhhhhhhhhh.hhh.eeee.....hhhhhhhhhhhh.....eee...hhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ksx J 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
168 178 188 198 208 218 228 238 248 258 268 278 288 298
Chain K from PDB Type:DNA Length:21
1ksx K 1 ATAATTGTTGTTAACAACAAT 21
10 20
Chain M from PDB Type:PROTEIN Length:145
aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot Length:605
Alignment length:145
168 178 188 198 208 218 228 238 248 258 268 278 288 298
VE1_BPV1 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANTLNVREECLMLQPAKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
SCOP domains d1ksxm_ M: Replication initiation protein E1 SCOP domains
CATH domains 1ksxM00 M:159-303 [code=3.40.1310.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhh..hhhhh.........eeeeeeeee..hhhhhhhhhhhhhh.eeeeeeeeeee..eeeeeeeeeeeeeehhhhhhhhhhhhhh.hhh.eeee.....hhhhhhhhhhhhhh...eee...hhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ksx M 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
168 178 188 198 208 218 228 238 248 258 268 278 288 298
Chain N from PDB Type:PROTEIN Length:145
aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot Length:605
Alignment length:145
168 178 188 198 208 218 228 238 248 258 268 278 288 298
VE1_BPV1 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANTLNVREECLMLQPAKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
SCOP domains d1ksxn_ N: Replication initiation protein E1 SCOP domains
CATH domains 1ksxN00 N:159-303 [code=3.40.1310.10, no name defined] CATH domains
Pfam domains (1) -------PPV_E1_C-1ksxN01 N:166-303 Pfam domains (1)
Pfam domains (2) -------PPV_E1_C-1ksxN02 N:166-303 Pfam domains (2)
Pfam domains (3) -------PPV_E1_C-1ksxN03 N:166-303 Pfam domains (3)
Pfam domains (4) -------PPV_E1_C-1ksxN04 N:166-303 Pfam domains (4)
Pfam domains (5) -------PPV_E1_C-1ksxN05 N:166-303 Pfam domains (5)
Pfam domains (6) -------PPV_E1_C-1ksxN06 N:166-303 Pfam domains (6)
Pfam domains (7) -------PPV_E1_C-1ksxN07 N:166-303 Pfam domains (7)
Pfam domains (8) -------PPV_E1_C-1ksxN08 N:166-303 Pfam domains (8)
Sec.struct. author hhhhhhhhhhhhhh.hhhhhh........eeeeeeeeee..hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeeeeeeeeehhhhhhhhhhhhh.hhh.eeee.....hhhhhhhhhhhh.....eee...hhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ksx N 159 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN 303
168 178 188 198 208 218 228 238 248 258 268 278 288 298
Chain O from PDB Type:DNA Length:21
1ksx O 1 ATAATTGTTGTTAACAACAAT 21
10 20
Legend: |
|
→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |