Chain A from PDB Type:PROTEIN Length:183
aligned with TBP1_ARATH | P28147 from UniProtKB/Swiss-Prot Length:200
Alignment length:183
25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195
TBP1_ARATH 16 KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI 198
SCOP domains d1qn5a1 A:16-115 TATA-box binding protein (TBP), C-terminal domain d1qn5a2 A:116-198 TATA-box binding protein (TBP), C-terminal domain SCOP domains
CATH domains ---1qn5A01 1qn5A02 A:30-115 TATA-Binding Protein 1qn5A01 A:19-29,A:116-197 TATA-Binding Protein - CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........eeeeeeeeee.....hhhhhhhhh..eee......eeeeee....eeeeee...eeeee...hhhhhhhhhhhhhhhhhhh............eeeeeee.....hhhhhhhhh.............eeeee....eeeee....eeeeeee.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------TFIID PDB: A:52-101 UniProt: 52-101 -----------------------------------------TFIID PDB: A:143-192 UniProt: 143-192 ------ PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1qn5 A 16 KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI 198
25 35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195
Chain B from PDB Type:PROTEIN Length:186
aligned with TBP1_ARATH | P28147 from UniProtKB/Swiss-Prot Length:200
Alignment length:186
21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191
TBP1_ARATH 12 VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRK 197
SCOP domains d1qn5b1 B:12-115 TATA-box binding protein (TBP), C-terminal domain d1qn5b2 B:116-197 TATA-box binding protein (TBP), C-terminal domain SCOP domains
CATH domains -------1qn5B01 1qn5B02 B:30-115 TATA-Binding Protein 1qn5B01 B:19-29,B:116-197 TATA-Binding Protein CATH domains
Pfam domains (1) --------------------------------------------------------------------------------------------------TBP-1qn5B01 B:110-196 - Pfam domains (1)
Pfam domains (2) --------------------------------------------------------------------------------------------------TBP-1qn5B02 B:110-196 - Pfam domains (2)
Pfam domains (3) --------------------------------------------------------------------------------------------------TBP-1qn5B03 B:110-196 - Pfam domains (3)
Pfam domains (4) --------------------------------------------------------------------------------------------------TBP-1qn5B04 B:110-196 - Pfam domains (4)
Sec.struct. author ............eeeeeeeeee.....hhhhhhhhh............eeeee....eeeee....eeeee...hhhhhhhhhhhhhhhhhhh............eeeeeee.....hhhhhhhhh.............eeeee....eeeee....eeeeeee.hhhhhhhhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ----------------------------------------TFIID PDB: B:52-101 UniProt: 52-101 -----------------------------------------TFIID PDB: B:143-192 UniProt: 143-192 ----- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1qn5 B 12 VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRK 197
21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191
Chain C from PDB Type:DNA Length:14
1qn5 C 201 GCTATAAGAGGGCA 214
210
Chain D from PDB Type:DNA Length:14
1qn5 D 215 TGCCCTCTTATAGC 228
224
Chain E from PDB Type:DNA Length:14
1qn5 E 201 GCTATAAGAGGGCA 214
210
Chain F from PDB Type:DNA Length:14
1qn5 F 215 TGCCCTCTTATAGC 228
224
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |