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Description|
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Compounds
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Chains, Units
Summary Information (see also Sequences/Alignments below) |
Ligands, Modified Residues, Ions (11, 310)
Asymmetric/Biological Unit (11, 310)
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Sites (240, 240)
Asymmetric Unit (240, 240)
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SS Bonds (0, 0)| (no "SS Bond" information available for 3CCS) |
Cis Peptide Bonds (6, 6)
Asymmetric/Biological Unit
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SAPs(SNPs)/Variants (2, 2)
Asymmetric/Biological Unit (2, 2)
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PROSITE Motifs (26, 26)
Asymmetric/Biological Unit (26, 26)
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Exons (0, 0)| (no "Exon" information available for 3CCS) |
Sequences/Alignments
Asymmetric/Biological Unit
Chain 0 from PDB Type:RNA Length:2754
3ccs 0 10 UAUGCCAGCUGGUGGAUUGCUCGGCUCAGGCGCUGAUGAAGGACGUGCCAAGCUGCGAUAAGCUGUGGGGAGCCGCACGGAGGCGAAGAACCACAGAUUUCCGAAUGAGAAUCUCUAACAAUUGCUUCGCGCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAACGCAACGUGAUGUCGUUAGUAACCGCGAGUGAACGCGAUACAGCCCAAACCGAAGCCCUCACGGGCAAUGUGGUGUCAGGGCUACCUCUCAUCAGCCGACCGUCUUCACGAAGUCUCUUGGAAUAGAGCGUGAUACAGGGUGACAACCCCGUACUGAAGACCAGUACGCUGUGCGGUAGUGCCAGAGUAGCGGGGGUUGGAUAUCCCUCGCGAAUAACGCAGGCAUCGACUGCGAAGGCUAAACACAACCUGAGACCGAUAGUGAACAAGUAGUGUGAACGAACGCUGCAAAGUACCCUCAGAAGGGAGGCGAAAUAGAGCAUGAAAUCAGUUGGCGAUCGAGCGACAGGGCAUACAAGGUCCCUUGACGAAUGACCGAGACGCGAGUCUCCAGUAAGACUCACGGGAAGCCGAUGUUCUGUCGUACGUUUUGaAAAACGAGCCAGGGAGUGUGUCUGUAUGGCAAGUCUAACCGGAGUAUCCGGGGAGGCACAGGGAAACCGACAUGGCCGCAGGGCUUGCCCGAGGGCCGCCGUCUUCAAGGGCGGGGAGCCAUGUGGACACGACCCGAAUCCGGACGAUCUACGCAUGGACAAGAUGAAGCGUGCCGAAAGGCACGUGGAAGUCUGUUAGAGUUGGUGUCCUACAAUACCCUCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGGCAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUAGUCUGUGAGGUAGAGCGACCGAUUGGUCCUGUCAAACUCCAAACUUACAGACGCUGUUUGACGCGGGGAUUCCGGUGCGCGGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCCCAAGUGUGGAUUAAGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAAGAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAAUGAUCGGGACUCAAAUCCACCACCGAGACCUGUCCGUACCACUCAUACUGGUAAUCGAGUAGAUUGGCGCUCUAAUUGGAUGGAAGCAGGGGCGAGAGCUCCUGUGGACCGAUUAGUGACGAAAAUCCUGGCCAUAGUAGCAGCGAUAGUCGGGUGAGAACCCCGACGGCCUAAUGGAUAAGGGUUCCUCAGCACUGCUGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCUCACCGCAACUCGACUGAGACGAAAUGGGAAACAGGUUAAUAUUCCUGUGCCAUCAUGCAGUGAAAGUUGACGCCCUGGGGUCGAUCACGCCGGGCAUCGCCCGGUCGAACCGUCCAACUCCGUGGAAGCCGUAAUGGCAGGAAGCGGACGAACGGCGGCAUAGGGAAACGUGAUUCAACCUGGGGCCCAUGAAAAGACGAGCAUGAUGUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCCAAGGCCUGUCGGGAGCAACCAACGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCUCCGGAACGGAGCAGGUCGCAGUGACUCGGAAGCUCGGACUGUCUAGUAACAACAUAGGUGACCGCAAAUCCGCAAGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGGGGGUCUUAAGGUAGCGUAGUACCUUGCCGCAUCAGUAGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUGUCCCAACGUUGGGCCCGGUGAACUGUACAUUCCAGUGCGGAGUCUGGAGACACCCAGGGGGAAGCAAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAGGACUCUCACUCCGGGAGGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGUCAUCUCAGCCGGGGACCCGGCGAAGAGUGCAAGAGCAAAAGAUGACUUGACAGUGUUCUUCCCAACGAGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAGCCUGCUUGAUGCGGGCAAUUGAUGACAGAAAAGCUACCCUAGGAAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUugUUCGCCUAUUAAAGGAGGUCGUGAGCUGGGuUuAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUGUAGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUCGAGAGAGCACGUGCCGGGUAGCCACGCCACACGGGGUAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAAAAGAGACACCGCCGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAGGUAACGAGACGUUAAGCCCACGAGCACUAACAGACCAA 2914
19 29 39 49 59 69 79 89 99 109 119 ||131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421 431 441 451 461 471 481 491 501 511 521 531 541 551 561 571 581 591 601 611 621 |631 641 651 661 671 681 691 701 711 || 722 732 742 752 762 772 782 792 802 812 822 832 842 852 862 872 882 892 902 912 922 932 942 952 962 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1561 1571 1581 1591 1601 1611 1621 1631 1641 1651 1661 1671 1681 1691 1701 1711 1721 1731 1741 1751 1761 1771 1781 1791 1801 1811 1821 1831 1841 1851 1861 1871 1881 1891 1901 1911 1921 1931 1941 1951| 1973 1983 1993 2003 2013 2023 2033 2043 2053 2063 2073 2083 2093 2103 2113 2123 2133 || 2243 2253 2263 2273 2283 2293 2303 2313 2323 2333 ||2348 2358 2368 2378 2388 2398 2408 2418 2428 2438 2448 2458 2468 2478 2488 2498 2508 2518 2528 2538 2548 2558 2568 2578 2588 2598 2608 2618| | 2628 2638 2648 2658 |2670 2680 2690 2700 2710 2720 2730 2740 2750 2760 2770 2780 2790 2800 2810 2820 2830 2840 2850 2860 2870 2880 2890 2900 2910
125| 628-1MA 714| 970| 1559| 1951| 2136| 2338| 2587-OMU 2619-UR3 2664|
128 716 999 1561 1964 2237 2344 2588-OMG 2621-PSU 2667
Chain 1 from PDB Type:PROTEIN Length:56 aligned with RL37_HALMA | P32410 from UniProtKB/Swiss-Prot Length:57 Alignment length:56 11 21 31 41 51 RL37_HALMA 2 TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAGE 57 SCOP domains d3ccs11 1:1-56 50S subunit SCOP domains CATH domains 3ccs100 1:1-56 [code=2.20.25.30, no name defined] CATH domains Pfam domains -------------------------------------------------------- Pfam domains SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs) PROSITE ---RIBOSOMAL_L37E --------------------------------- PROSITE Transcript -------------------------------------------------------- Transcript 3ccs 1 1 TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAGE 56 10 20 30 40 50 Chain 2 from PDB Type:PROTEIN Length:46 aligned with RL39_HALMA | P22452 from UniProtKB/Swiss-Prot Length:50 Alignment length:49 11 21 31 41 RL39_HALMA 2 GKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTDE 50 SCOP domains d3ccs21 2:1-49 Ribosomal protei n L39e SCOP domains CATH domains 3ccs200 2:1-49 CATH domains Pfam domains ------------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------------- SAPs(SNPs) PROSITE ---------------------------RIBOSOMAL_L39E ----- PROSITE Transcript ------------------------------------------------- Transcript 3ccs 2 1 GKKSKATKKRLAKLDNQNSRVPAWVMLKTDR---RNHKRRHWRRNDTDE 49 10 20 30| | 40 31 35 Chain 3 from PDB Type:PROTEIN Length:92 aligned with RL44E_HALMA | P32411 from UniProtKB/Swiss-Prot Length:92 Alignment length:92 10 20 30 40 50 60 70 80 90 RL44E_HALMA 1 MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLREGWRAGRLEFQE 92 SCOP domains d3ccs31 3:1-92 50S subunit SCOP domains CATH domains 3ccs300 3:1-92 [code=3.10.450.80, no name defined] CATH domains Pfam domains -------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) -------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) -------------------------------------------------------------------------------------------- PROSITE (3) PROSITE (4) -----------------------------------------------------------RIBOSOMAL_L4--------------------- PROSITE (4) Transcript -------------------------------------------------------------------------------------------- Transcript 3ccs 3 1 MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLREGWRAGRLEFQE 92 10 20 30 40 50 60 70 80 90
Chain 9 from PDB Type:RNA Length:122
3ccs 9 1 UUAGGCGGCCACAGCGGUGGGGUUGCCUCCCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCAGCGUUCCAGGGAGUACUGGAGUGCGCGAGCCUCUGGGAAAUCCGGUUCGCCGCCACC 122
10 20 30 40 50 60 70 80 90 100 110 120
Chain A from PDB Type:PROTEIN Length:237 aligned with RL2_HALMA | P20276 from UniProtKB/Swiss-Prot Length:240 Alignment length:237 11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 RL2_HALMA 2 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG 238 SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains CATH domains 3ccsA01 A:1-78 Nucleic acid-binding proteins ---3ccsA02 A:82-159 [code=2.30.30.30, no name defined] 3ccsA03 A:160-237 Ribosomal protein L2, domain 3 CATH domains Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L2--------------------------------------- PROSITE Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs A 1 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG 237 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 Chain B from PDB Type:PROTEIN Length:337 aligned with RL3_HALMA | P20279 from UniProtKB/Swiss-Prot Length:338 Alignment length:337 11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 RL3_HALMA 2 PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPNDQPRLDPEVRYVSNESNQG 338 SCOP domains d3ccsb1 B:1-337 Ribosomal protein L3 SCOP domains CATH domains 3ccsB01 B:1-38,B:207-257 3ccsB02 B:39-77,B:189-206,B:258-337 3ccsB03 B:78-188 [code=3.30.1430.10, no name defined] 3ccsB02 3ccsB01 B:1-38,B:207-257 3ccsB02 B:39-77,B:189-206,B:258-337 Translation factors CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L3 ------------------------------------------------------------------------------------------------------------------------ PROSITE (2) Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs B 1 PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPNDQPRLDPEVRYVSNESNQG 337 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 Chain C from PDB Type:PROTEIN Length:246 aligned with RL4_HALMA | P12735 from UniProtKB/Swiss-Prot Length:246 Alignment length:246 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 RL4_HALMA 1 MQATIYDLDGNTDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKQDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAER 246 SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains CATH domains 3ccsC00 C:1-246 [code=3.40.1370.10, no name defined] CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE ------------------------------------------------------------------------------------------------------RIBOSOMAL_L1E --------------------------------------------------------------------------------------------------------------------- PROSITE Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 3ccs C 1 MQATIYDLDGNTDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKQDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAER 246 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 Chain D from PDB Type:PROTEIN Length:140 aligned with RL5_HALMA | P14124 from UniProtKB/Swiss-Prot Length:177 Alignment length:165 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 RL5_HALMA 11 FHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV 175 SCOP domains d3ccsd1 D:10-174 50S subunit SCOP domains CATH domains 3ccsD00 D:10-174 [c ode=3.30.1440.10, no name defined] CATH domains Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3) PROSITE (4) -------------------------------RIBOSOMAL_L5 --------------------------------------------------------------------------------------------------------------------- PROSITE (4) Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs D 10 FHEMREPRIEKVVVHMGIGH-----ANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFG--------------------LDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV 174 19 29 | 39 49 59 69 79 89 99 | - - 129 139 149 159 169 29 35 107 128 Chain E from PDB Type:PROTEIN Length:172 aligned with RL6_HALMA | P14135 from UniProtKB/Swiss-Prot Length:178 Alignment length:172 11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 RL6_HALMA 2 PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP 173 SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains CATH domains 3ccsE01 E:1-79 [code=3.90.930.12, no name defined] 3ccsE02 E:80-172 [code=3.90.930.12, no name defined] CATH domains Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) -S--------------------S----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L6_2 - PROSITE Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs E 1 PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP 172 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 Chain F from PDB Type:PROTEIN Length:119 aligned with RL7A_HALMA | P12743 from UniProtKB/Swiss-Prot Length:120 Alignment length:119 11 21 31 41 51 61 71 81 91 101 111 RL7A_HALMA 2 PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEADADVEDIADKVEELR 120 SCOP domains d3ccsf1 F:1-119 Ribosomal protein L7ae SCOP domains CATH domains 3ccsF00 F:1-119 [code=3.30.1330.30, no name defined] CATH domains Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------------------------------RIBOSOMAL_L7AE ----------------------------------- PROSITE Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript 3ccs F 1 PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEADADVEDIADKVEELR 119 10 20 30 40 50 60 70 80 90 100 110 Chain G from PDB Type:PROTEIN Length:29 aligned with RL10_HALMA | P15825 from UniProtKB/Swiss-Prot Length:348 Alignment length:62 21 31 41 51 61 71 RL10_HALMA 12 IPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDD 73 SCOP domains -------------------------------------------------------------- SCOP domains CATH domains -------------------------------------------------------------- CATH domains Pfam domains -------------------------------------------------------------- Pfam domains SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs) PROSITE -------------------------------------------------------------- PROSITE Transcript -------------------------------------------------------------- Transcript 3ccs G 12 IPEWKQEEVDAIVEMIES---------------------------------RNTLLERALDD 73 21 | - - - - | 71 29 63 Chain H from PDB Type:PROTEIN Length:160 aligned with RL10E_HALMA | P60617 from UniProtKB/Swiss-Prot Length:177 Alignment length:171 13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 RL10E_HALMA 4 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL 174 SCOP domains d3ccsh1 H:4-166 Ribosomal protein L10e -------- SCOP domains CATH domains 3ccsH00 H:4-174 [code=3.90.1170.10, no name defined] CATH domains Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) ---------------------------------------------------------------------------------------------------------RIBOSOMAL_L10E -------------------------------------------- PROSITE (3) Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs H 4 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENK-----------DGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL 174 13 23 33 43 53 63 73 83 93 |- -| 123 133 143 153 163 173 102 114 Chain I from PDB Type:PROTEIN Length:70 aligned with RL11_HALMA | P14122 from UniProtKB/Swiss-Prot Length:162 Alignment length:70 76 86 96 106 116 126 136 RL11_HALMA 67 GVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE 136 SCOP domains d3ccsi1 I:66-129 Ribosomal protein L11, C-terminal domain ------ SCOP domains CATH domains 3ccsI00 I:66-135 [code=1.10.10.250, no name defined] CATH domains Pfam domains ---------------------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ---------------------------------------------------------------------- PROSITE (2) PROSITE (3) ---------------------------------------------------------------------- PROSITE (3) PROSITE (4) -------------------------------------------------------RIBOSOMAL_L11 PROSITE (4) Transcript ---------------------------------------------------------------------- Transcript 3ccs I 66 GVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE 135 75 85 95 105 115 125 135 Chain J from PDB Type:PROTEIN Length:142 aligned with RL13_HALMA | P29198 from UniProtKB/Swiss-Prot Length:145 Alignment length:142 13 23 33 43 53 63 73 83 93 103 113 123 133 143 RL13_HALMA 4 AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW 145 SCOP domains d3ccsj1 J:4-145 50S subunit SCOP domains CATH domains 3ccsJ00 J:4-145 [code=3.90.1180.10, no name defined] CATH domains Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) -------------------------------------------------------------------------------RIBOSOMAL_L13 --------------------------------------- PROSITE (3) Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs J 4 AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW 145 13 23 33 43 53 63 73 83 93 103 113 123 133 143 Chain K from PDB Type:PROTEIN Length:132 aligned with RL14_HALMA | P22450 from UniProtKB/Swiss-Prot Length:132 Alignment length:132 10 20 30 40 50 60 70 80 90 100 110 120 130 RL14_HALMA 1 MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132 SCOP domains d3ccsk1 K:1-132 50S subunit SCOP domains CATH domains 3ccsK00 K:1-132 Ribosomal Protein L14; CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE (2) ----------------------------------------------------------------------RIBOSOMAL_L14 PDB: K:71-97----------------------------------- PROSITE (2) Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript 3ccs K 1 MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132 10 20 30 40 50 60 70 80 90 100 110 120 130 Chain L from PDB Type:PROTEIN Length:145 aligned with RL15_HALMA | P12737 from UniProtKB/Swiss-Prot Length:165 Alignment length:150 11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 RL15_HALMA 2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEERQ 151 SCOP domains d3ccsl1 L:1-150 50S subunit SCOP domains CATH domains 3ccsL01 L:1-50 3ccsL02 L:51-149 [code=3.100.10. 10, no name defined] - CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE (2) ----------------------------------------------------------------------------------------------------------RIBOSOMAL_L15 PDB: L:107-137 ------------- PROSITE (2) Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 3ccs L 1 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAE-----FRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEERQ 150 10 20 30 40 50 60 70 80 | 90 100 110 120 130 140 150 83 89 Chain M from PDB Type:PROTEIN Length:194 aligned with RL15E_HALMA | P60618 from UniProtKB/Swiss-Prot Length:196 Alignment length:194 11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 RL15E_HALMA 2 ARSAYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGKG 195 SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains CATH domains 3ccsM00 M:1-194 Ribosomal protein l15e CATH domains Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ----------------------------------------------RIBOSOMAL_L15E ---------------------------------------------------------------------------------------------------------------------------- PROSITE (2) Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs M 1 ARSAYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGKG 194 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 Chain N from PDB Type:PROTEIN Length:186 aligned with RL18_HALMA | P14123 from UniProtKB/Swiss-Prot Length:187 Alignment length:186 11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 RL18_HALMA 2 ATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGDIEL 187 SCOP domains d3ccsn1 N:1-186 50S subunit SCOP domains CATH domains 3ccsN00 N:1-186 [code=3.30.420.100, no name defined] CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 3ccs N 1 ATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGDIEL 186 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 Chain O from PDB Type:PROTEIN Length:115 aligned with RL18E_HALMA | P12733 from UniProtKB/Swiss-Prot Length:116 Alignment length:115 11 21 31 41 51 61 71 81 91 101 111 RL18E_HALMA 2 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLEQAIENNPEGSHVRVIR 116 SCOP domains d3ccso1 O:1-115 50S subunit SCOP domains CATH domains 3ccsO00 O:1-115 [code=3.100.10.10, no name defined] CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ------------------------------RIBOSOMAL_L18E ------------------------------------------------------------------- PROSITE (2) Transcript ------------------------------------------------------------------------------------------------------------------- Transcript 3ccs O 1 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLEQAIENNPEGSHVRVIR 115 10 20 30 40 50 60 70 80 90 100 110 Chain P from PDB Type:PROTEIN Length:143 aligned with RL19E_HALMA | P14119 from UniProtKB/Swiss-Prot Length:149 Alignment length:143 11 21 31 41 51 61 71 81 91 101 111 121 131 141 RL19E_HALMA 2 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDA 144 SCOP domains d3ccsp1 P:1-143 Ribosomal protein L19 (L19e) SCOP domains CATH domains 3ccsP01 P:1-55 [code=1.10.1650.10, no name defined] 3ccsP02 P:56-88 Single Heli x bin3ccsP03 P:89-143 [code=1.10.1200.60, no name defined] CATH domains Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) -----RIBOSOMAL_L19E ---------------------------------------------------------------------------------------------------------------------- PROSITE (2) Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs P 1 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDA 143 10 20 30 40 50 60 70 80 90 100 110 120 130 140 Chain Q from PDB Type:PROTEIN Length:95 aligned with RL21_HALMA | P12734 from UniProtKB/Swiss-Prot Length:96 Alignment length:95 11 21 31 41 51 61 71 81 91 RL21_HALMA 2 PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQE 96 SCOP domains d3ccsq1 Q:1-95 50S subunit SCOP domains CATH domains 3ccsQ00 Q:1-95 Myosin S1 fragment SH3-like barrel CATH domains Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ----------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) -----------------------------------RIBOSOMAL_L21E ---------------------------------- PROSITE (3) Transcript ----------------------------------------------------------------------------------------------- Transcript 3ccs Q 1 PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQE 95 10 20 30 40 50 60 70 80 90 Chain R from PDB Type:PROTEIN Length:150 aligned with RL22_HALMA | P10970 from UniProtKB/Swiss-Prot Length:155 Alignment length:150 11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 RL22_HALMA 2 GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP 151 SCOP domains d3ccsr1 R:1-150 Ribosomal protein L22 SCOP domains CATH domains 3ccsR00 R:1-150 Ribosomal Protein L22; Chain A CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2) PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3) PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (4) PROSITE (5) --------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L22 --- PROSITE (5) Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 3ccs R 1 GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP 150 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 Chain S from PDB Type:PROTEIN Length:81 aligned with RL23_HALMA | P12732 from UniProtKB/Swiss-Prot Length:85 Alignment length:81 11 21 31 41 51 61 71 81 RL23_HALMA 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASRI 82 SCOP domains d3ccss1 S:1-81 Ribosomal protein L23 SCOP domains CATH domains 3ccsS00 S:1-81 [code=3.30.70.330, no name defined] CATH domains Pfam domains --------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) --------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) --------------------------------------------------------------------------------- PROSITE (3) PROSITE (4) --------------------------------------------------------------------------------- PROSITE (4) PROSITE (5) -------------------------------------------------------------RIBOSOMAL_L23 ---- PROSITE (5) Transcript --------------------------------------------------------------------------------- Transcript 3ccs S 1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASRI 81 10 20 30 40 50 60 70 80 Chain T from PDB Type:PROTEIN Length:119 aligned with RL24_HALMA | P10972 from UniProtKB/Swiss-Prot Length:120 Alignment length:119 11 21 31 41 51 61 71 81 91 101 111 RL24_HALMA 2 SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA 120 SCOP domains d3ccst1 T:1-119 50S subunit SCOP domains CATH domains 3ccsT00 T:1-119 [code=2.30.30.30, no name defined] CATH domains Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE --------------------------------------------RIBOSOMAL_L24 --------------------------------------------------------- PROSITE Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript 3ccs T 1 SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA 119 10 20 30 40 50 60 70 80 90 100 110 Chain U from PDB Type:PROTEIN Length:53 aligned with RL24E_HALMA | P14116 from UniProtKB/Swiss-Prot Length:67 Alignment length:53 14 24 34 44 54 RL24E_HALMA 5 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 57 SCOP domains d3ccsu1 U:4-56 50S subunit SCOP domains CATH domains 3ccsU00 U:4-56 [code=2.30.170.20, no name defined] CATH domains Pfam domains ----------------------------------------------------- Pfam domains SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs) PROSITE (2) ----------------------------------------------------- PROSITE (2) PROSITE (3) ----RIBOSOMAL_L24E ------------------------------- PROSITE (3) Transcript ----------------------------------------------------- Transcript 3ccs U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 56 13 23 33 43 53 Chain V from PDB Type:PROTEIN Length:65 aligned with RL29_HALMA | P10971 from UniProtKB/Swiss-Prot Length:71 Alignment length:65 11 21 31 41 51 61 RL29_HALMA 2 TVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGD 66 SCOP domains d3ccsv1 V:1-65 50S subunit SCOP domains CATH domains 3ccsV00 V:1-65 [code=1.10.287.310, no name defined] CATH domains Pfam domains ----------------------------------------------------------------- Pfam domains SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ----------------------------------------------------------------- PROSITE (2) PROSITE (3) ----------------------------------------------------------------- PROSITE (3) PROSITE (4) ----------------------------------------------------------------- PROSITE (4) PROSITE (5) -----------------------------------------RIBOSOMAL_L29 --------- PROSITE (5) Transcript ----------------------------------------------------------------- Transcript 3ccs V 1 TVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGD 65 10 20 30 40 50 60 Chain W from PDB Type:PROTEIN Length:154 aligned with RL30_HALMA | P14121 from UniProtKB/Swiss-Prot Length:154 Alignment length:154 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 RL30_HALMA 1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR 154 SCOP domains d3ccsw1 W:1-154 50S subunit SCOP domains CATH domains 3ccsW01 W:1-57,W:114-154 3ccsW02 W:58-113 [code=1.10.15.30, no name defined] 3ccsW01 W:1-57,W:114-154 CATH domains Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3) PROSITE (4) -------------------RIBOSOMAL_L30 PDB: W:20-52 ------------------------------------------------------------------------------------------------------ PROSITE (4) Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs W 1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR 154 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 Chain X from PDB Type:PROTEIN Length:82 aligned with RL31_HALMA | P18138 from UniProtKB/Swiss-Prot Length:92 Alignment length:82 17 27 37 47 57 67 77 87 RL31_HALMA 8 ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE 89 SCOP domains d3ccsx1 X:7-88 50S subunit SCOP domains CATH domains 3ccsX00 X:7-88 [code=3.10.440.10, no name defined] CATH domains Pfam domains ---------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ---------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) -----------------------------------------RIBOSOMAL_L31E -------------------------- PROSITE (3) Transcript ---------------------------------------------------------------------------------- Transcript 3ccs X 7 ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE 88 16 26 36 46 56 66 76 86 Chain Y from PDB Type:PROTEIN Length:142 aligned with RL32_HALMA | P12736 from UniProtKB/Swiss-Prot Length:241 Alignment length:142 105 115 125 135 145 155 165 175 185 195 205 215 225 235 RL32_HALMA 96 TELQARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLNPTYVEV 237 SCOP domains d3ccsy1 Y:95-236 Ribosomal protein L32e SCOP domains CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3) PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4) PROSITE (5) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5) PROSITE (6) ---------------------------------RIBOSOMAL_L32E ---------------------------------------------------------------------------------------- PROSITE (6) Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript 3ccs Y 95 TELQARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLNPTYVEV 236 104 114 124 134 144 154 164 174 184 194 204 214 224 234 Chain Z from PDB Type:PROTEIN Length:73 aligned with RL37A_HALMA | P60619 from UniProtKB/Swiss-Prot Length:92 Alignment length:73 19 29 39 49 59 69 79 RL37A_HALMA 10 SSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRS 82 SCOP domains -d3ccsz1 Z:35-106 Ribosomal protein L37ae SCOP domains CATH domains 3ccsZ00 Z:34-106 [code=2.20.25.30, no name defined] CATH domains Pfam domains ------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------------------------------------- PROSITE Transcript ------------------------------------------------------------------------- Transcript 3ccs Z 34 SSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRS 106 43 53 63 73 83 93 103
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SCOP Domains (11, 24)
Asymmetric/Biological Unit
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CATH Domains (32, 36)
Asymmetric/Biological Unit
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Pfam Domains (0, 0)| (no "Pfam Domain" information available for 3CCS) |
Gene Ontology (23, 232)|
Asymmetric/Biological Unit(hide GO term definitions) Chain 1 (RL37_HALMA | P32410)
Chain 2 (RL39_HALMA | P22452)
Chain 3 (RL44E_HALMA | P32411)
Chain A (RL2_HALMA | P20276)
Chain B (RL3_HALMA | P20279)
Chain C (RL4_HALMA | P12735)
Chain D (RL5_HALMA | P14124)
Chain E (RL6_HALMA | P14135)
Chain F (RL7A_HALMA | P12743)
Chain G (RL10_HALMA | P15825)
Chain H (RL10E_HALMA | P60617)
Chain I (RL11_HALMA | P14122)
Chain J (RL13_HALMA | P29198)
Chain K (RL14_HALMA | P22450)
Chain L (RL15_HALMA | P12737)
Chain M (RL15E_HALMA | P60618)
Chain N (RL18_HALMA | P14123)
Chain O (RL18E_HALMA | P12733)
Chain P (RL19E_HALMA | P14119)
Chain Q (RL21_HALMA | P12734)
Chain R (RL22_HALMA | P10970)
Chain S (RL23_HALMA | P12732)
Chain T (RL24_HALMA | P10972)
Chain U (RL24E_HALMA | P14116)
Chain V (RL29_HALMA | P10971)
Chain W (RL30_HALMA | P14121)
Chain X (RL31_HALMA | P18138)
Chain Y (RL32_HALMA | P12736)
Chain Z (RL37A_HALMA | P60619)
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Interactive Views
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