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(-) Description

Title :  THE STRUCTURE OF CC-HPMN AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
 
Authors :  T. M. Schmeing, T. A. Steitz
Date :  16 Dec 04  (Deposition) - 29 Nov 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1,2,3,4,5,9
Keywords :  Ribosome 50S, Protein-Protein Complex, Rna-Rna Complex, Protein-Rna Complex, Peptidyl Transferase Reaction, Ribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. M. Schmeing, K. S. Huang, S. A. Strobel, T. A. Steitz
An Induced-Fit Mechanism To Promote Peptide Bond Formation And Exclude Hydrolysis Of Peptidyl-Trna.
Nature V. 438 520 2005
PubMed-ID: 16306996  |  Reference-DOI: 10.1038/NATURE04152
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 23S RIBOSOMAL RNA
    Chains0
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 2 - 5S RIBOSOMAL RNA
    Chains9
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 3 - 5'-R(*CP*CP*(PPU)*(LOF))-3'
    Chains4
    EngineeredYES
    Other DetailsCYTIDINE-CYTIDINE-HYDROXYPUROMYCIN OLIGOMER
    SyntheticYES
 
Molecule 4 - 5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3'
    Chains5
    EngineeredYES
    Other DetailsCCA-PHE-CAPROIC ACID BIOTIN OLIGOMER
    SyntheticYES
 
Molecule 5 - 50S RIBOSOMAL PROTEIN L2P
    ChainsA
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 6 - 50S RIBOSOMAL PROTEIN L3P
    ChainsB
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 7 - 50S RIBOSOMAL PROTEIN L4E
    ChainsC
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 8 - 50S RIBOSOMAL PROTEIN L5P
    ChainsD
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 9 - 50S RIBOSOMAL PROTEIN L6P
    ChainsE
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 10 - 50S RIBOSOMAL PROTEIN L7AE
    ChainsF
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 11 - ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG
    ChainsG
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 12 - 50S RIBOSOMAL PROTEIN L10E
    ChainsH
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 13 - 50S RIBOSOMAL PROTEIN L13P
    ChainsJ
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 14 - 50S RIBOSOMAL PROTEIN L14P
    ChainsK
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 15 - 50S RIBOSOMAL PROTEIN L15P
    ChainsL
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 16 - 50S RIBOSOMAL PROTEIN L15E
    ChainsM
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 17 - 50S RIBOSOMAL PROTEIN L18P
    ChainsN
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 18 - 50S RIBOSOMAL PROTEIN L18E
    ChainsO
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 19 - 50S RIBOSOMAL PROTEIN L19E
    ChainsP
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 20 - 50S RIBOSOMAL PROTEIN L21E
    ChainsQ
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 21 - 50S RIBOSOMAL PROTEIN L22P
    ChainsR
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 22 - 50S RIBOSOMAL PROTEIN L23P
    ChainsS
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 23 - 50S RIBOSOMAL PROTEIN L24P
    ChainsT
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 24 - 50S RIBOSOMAL PROTEIN L24E
    ChainsU
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 25 - 50S RIBOSOMAL PROTEIN L29P
    ChainsV
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 26 - 50S RIBOSOMAL PROTEIN L30P
    ChainsW
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 27 - 50S RIBOSOMAL PROTEIN L31E
    ChainsX
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 28 - 50S RIBOSOMAL PROTEIN L32E
    ChainsY
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 29 - 50S RIBOSOMAL PROTEIN L37AE
    ChainsZ
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 30 - 50S RIBOSOMAL PROTEIN L37E
    Chains1
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 31 - 50S RIBOSOMAL PROTEIN L39E
    Chains2
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 32 - 50S RIBOSOMAL PROTEIN L44E
    Chains3
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238
 
Molecule 33 - 50S RIBOSOMAL PROTEIN L11P
    ChainsI
    Organism ScientificHALOARCULA MARISMORTUI
    Organism Taxid2238

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324252627282930313233
Asymmetric/Biological Unit ABCDEFGHIJKLMNOPQRSTUVWXYZ0123459

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (15, 321)

Asymmetric/Biological Unit (15, 321)
No.NameCountTypeFull Name
11MA1Mod. Nucleotide6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2ACA1OTHER6-AMINOHEXANOIC ACID
3BTN1OTHERBIOTIN
4CD5Ligand/IonCADMIUM ION
5CL22Ligand/IonCHLORIDE ION
6HFA1Mod. NucleotideALPHA-HYDROXY-BETA-PHENYL-PROPIONIC ACID
7K2Ligand/IonPOTASSIUM ION
8MG94Ligand/IonMAGNESIUM ION
9NA75Ligand/IonSODIUM ION
10OMG1Mod. NucleotideO2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
11OMU1Mod. NucleotideO2'-METHYLURIDINE 5'-MONOPHOSPHATE
12PPU1Mod. NucleotidePUROMYCIN-5'-MONOPHOSPHATE
13PSU1Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
14SR114Ligand/IonSTRONTIUM ION
15UR31Mod. Nucleotide3-METHYLURIDINE-5'-MONOPHOSHATE

(-) Sites  (311, 311)

Asymmetric Unit (311, 311)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREG 0:2482 , A 0:2483 , A 0:2532 , C 0:2533 , C 0:2534 , HOH 0:4212 , HOH 0:8301 , HOH 0:9802BINDING SITE FOR RESIDUE MG 0 8001
002AC2SOFTWAREG 0:627 , A 0:2483 , C 0:2534 , U 0:2535 , HOH 0:8280 , HOH 0:9884BINDING SITE FOR RESIDUE MG 0 8002
003AC3SOFTWAREA 0:876 , G 0:877 , A 0:2624 , HOH 0:4261 , HOH A:9500 , HOH A:9524BINDING SITE FOR RESIDUE MG 0 8003
004AC4SOFTWAREG 0:456 , A 0:459 , HOH 0:3387 , HOH 0:4376 , HOH 0:8286 , HOH 0:9673BINDING SITE FOR RESIDUE MG 0 8004
005AC5SOFTWAREA 0:1836 , U 0:1838 , A 0:1839 , HOH 0:4208 , HOH 0:8302 , HOH 0:8303BINDING SITE FOR RESIDUE MG 0 8005
006AC6SOFTWAREU 0:919 , C 0:2464 , A 0:2465 , HOH 0:4225 , HOH 0:8295 , HOH 0:8376BINDING SITE FOR RESIDUE MG 0 8008
007AC7SOFTWAREU 0:2610 , G 0:2611 , A 0:2612 , HOH 0:4332 , HOH 0:7886 , HOH 0:8296 , NA 0:9158 , HOH 0:9958BINDING SITE FOR RESIDUE MG 0 8009
008AC8SOFTWAREG 0:28 , HOH 0:3258 , HOH 0:3830 , HOH 0:4243 , HOH 0:8377 , HOH 0:9665BINDING SITE FOR RESIDUE MG 0 8012
009AC9SOFTWAREG 0:877 , G 0:2623 , A 0:2624 , HOH 0:4237 , HOH 0:4250 , HOH A:9614BINDING SITE FOR RESIDUE MG 0 8013
010AD1SOFTWAREG 0:33 , C 0:34 , U 0:457 , HOH C:9155BINDING SITE FOR RESIDUE SR 0 9500
011AD2SOFTWAREHOH 0:6368BINDING SITE FOR RESIDUE SR 0 9501
012AD3SOFTWAREG 0:1290 , A 0:1291 , HOH 0:5518 , HOH 0:8378BINDING SITE FOR RESIDUE SR 0 9504
013AD4SOFTWAREA 0:1746 , A 0:1747 , U 0:1748 , U 0:1749 , G 0:1752BINDING SITE FOR RESIDUE SR 0 9505
014AD5SOFTWAREA 0:632 , C 0:633 , A 0:2538 , U 0:2539 , HOH 0:4242 , HOH 0:5416 , HOH 0:8438BINDING SITE FOR RESIDUE SR 0 9506
015AD6SOFTWAREG 0:911 , G 0:1292 , HOH 0:3416 , HOH 0:3995BINDING SITE FOR RESIDUE SR 0 9508
016AD7SOFTWAREA 0:378 , G 0:379 , A 0:429 , HOH 0:5134 , HOH 0:7940BINDING SITE FOR RESIDUE SR 0 9509
017AD8SOFTWAREU 0:2663 , A 0:2811 , A 0:2812 , A 0:2816 , G 0:2817 , HOH 0:8435BINDING SITE FOR RESIDUE SR 0 9515
018AD9SOFTWAREC 0:1103 , HOH 0:3166 , GLU J:28BINDING SITE FOR RESIDUE SR 0 9517
019BC1SOFTWAREA 0:2101 , G 0:2102 , G 0:2537 , HOH 0:4211 , HOH 0:8277 , HOH 0:9659BINDING SITE FOR RESIDUE MG 0 8014
020BC2SOFTWAREA 0:844 , A 0:1689 , HOH 0:4217 , HOH 0:8311 , HOH 0:9633 , HOH 0:9650BINDING SITE FOR RESIDUE MG 0 8015
021BC3SOFTWAREG 0:456 , HOH 0:3038 , HOH 0:8287 , GLY C:86 , HOH C:9166 , HOH C:9170 , HOH C:9273BINDING SITE FOR RESIDUE MG 0 8017
022BC4SOFTWAREA 0:2011 , HOH 0:4737 , HOH 0:7702 , HOH 0:8306 , HOH 0:8307 , HOH 0:8308BINDING SITE FOR RESIDUE MG 0 8019
023BC5SOFTWAREC 0:1830 , HOH 0:8290 , HOH 0:8309 , HOH 0:9749 , HOH 0:9752 , HOH 0:9823BINDING SITE FOR RESIDUE MG 0 8020
024BC6SOFTWAREG 0:2304 , HOH 0:3570 , HOH 0:4233 , HOH 0:4234 , HOH 0:8293 , HOH 0:8294BINDING SITE FOR RESIDUE MG 0 8021
025BC7SOFTWAREG 0:2097 , U 0:2539 , G 0:2540 , HOH 0:4318 , HOH 0:5285 , HOH 0:9738BINDING SITE FOR RESIDUE MG 0 8022
026BC8SOFTWAREA 0:1381 , HOH 0:3544BINDING SITE FOR RESIDUE MG 0 8024
027BC9SOFTWAREU 0:1120 , G 0:1121 , HOH 0:4755 , HOH 0:8314 , NA 0:9102BINDING SITE FOR RESIDUE MG 0 8025
028BD1SOFTWAREG 0:2700 , HOH 0:4164BINDING SITE FOR RESIDUE SR 0 9522
029BD2SOFTWAREA 0:2622 , G 0:2623 , HOH 0:7676BINDING SITE FOR RESIDUE SR 0 9529
030BD3SOFTWAREG 0:2617 , G 0:2618 , UR3 0:2619 , HOH 0:4223 , HOH 0:4412 , HOH 0:8313BINDING SITE FOR RESIDUE SR 0 9530
031BD4SOFTWAREA 0:1427BINDING SITE FOR RESIDUE SR 0 9532
032BD5SOFTWAREU 0:2277 , U 0:2278 , G 0:2471 , HOH 0:3211 , HOH 0:4346 , HOH 0:4354 , MG 0:8113BINDING SITE FOR RESIDUE SR 0 9534
033BD6SOFTWAREA 0:1941BINDING SITE FOR RESIDUE SR 0 9537
034BD7SOFTWAREA 0:846 , G 0:1694 , G 0:1695BINDING SITE FOR RESIDUE SR 0 9539
035BD8SOFTWAREG 0:2609 , U 0:2610 , HOH 0:3899 , HOH 0:4315 , HOH 0:6148 , HOH 0:7977BINDING SITE FOR RESIDUE SR 0 9545
036BD9SOFTWAREA 0:1411 , HOH 0:6110 , HOH 0:7564BINDING SITE FOR RESIDUE SR 0 9547
037CC1SOFTWAREC 0:2608 , G 0:2609 , U 0:2610 , HOH 0:3019 , HOH 0:8315 , HOH 0:8316BINDING SITE FOR RESIDUE MG 0 8026
038CC2SOFTWAREC 0:240 , G 0:269 , HOH 0:4464 , HOH 0:4604 , HOH 0:4742 , HOH 0:8382BINDING SITE FOR RESIDUE MG 0 8027
039CC3SOFTWAREA 0:1448 , U 0:1677 , HOH 0:4274 , HOH 0:4294 , HOH 0:4305 , HOH 0:8319BINDING SITE FOR RESIDUE MG 0 8028
040CC4SOFTWAREU 0:1503 , A 0:1504 , C 0:1679 , HOH 0:8321 , HOH 0:8323BINDING SITE FOR RESIDUE MG 0 8029
041CC5SOFTWAREU 0:1748 , U 0:1749 , HOH 0:4235 , HOH 0:8288 , HOH 0:8289 , HOH 0:8299BINDING SITE FOR RESIDUE MG 0 8030
042CC6SOFTWAREU 0:777 , C 0:778 , HOH 0:3877 , HOH 0:8325 , SR 0:9441 , HOH 1:9519BINDING SITE FOR RESIDUE MG 0 8031
043CC7SOFTWAREU 0:2115 , G 0:2272 , HOH 0:3595 , HOH 0:4382 , HOH 0:4776 , ALA A:196 , HOH A:9538 , HOH A:9615BINDING SITE FOR RESIDUE MG 0 8032
044CC8SOFTWAREG 0:956 , HOH 0:4266 , HOH 0:8329 , HOH 0:8330 , HOH 0:8331 , HOH 0:9991BINDING SITE FOR RESIDUE MG 0 8036
045CC9SOFTWAREA 0:2553 , HOH 0:3739 , HOH 0:3815 , HOH 0:4244 , HOH 0:8386 , HOH 0:9704BINDING SITE FOR RESIDUE MG 0 8037
046CD1SOFTWAREHOH 0:6267BINDING SITE FOR RESIDUE SR 0 9560
047CD2SOFTWAREG 0:834 , U 0:835 , C 0:2644 , HOH 0:5042 , HOH 0:6648BINDING SITE FOR RESIDUE SR 0 9566
048CD3SOFTWAREU 0:2461 , HOH 0:6761 , ASP 3:59BINDING SITE FOR RESIDUE SR 0 9568
049CD4SOFTWAREC 0:1536BINDING SITE FOR RESIDUE SR 0 9570
050CD5SOFTWAREU 0:1996 , U 0:2589 , U 0:2590 , C 0:2591 , HOH 0:6142 , HOH 0:6454BINDING SITE FOR RESIDUE SR 0 9581
051CD6SOFTWAREA 0:1317 , SER Y:207BINDING SITE FOR RESIDUE SR 0 9585
052CD7SOFTWAREG 0:2102 , A 0:2103BINDING SITE FOR RESIDUE SR 0 9590
053CD8SOFTWAREG 0:2639BINDING SITE FOR RESIDUE SR 0 9601
054CD9SOFTWAREG 0:1376 , A 0:1693 , HOH 0:5053BINDING SITE FOR RESIDUE SR 0 9626
055DC1SOFTWAREHOH 0:4221 , HOH 0:4245 , HOH 0:4267 , HOH 0:4269 , HOH 0:8333 , HOH 0:9906BINDING SITE FOR RESIDUE MG 0 8038
056DC2SOFTWAREU 0:115 , G 0:118 , HOH 0:3517 , HOH 0:6751 , HOH 0:8334BINDING SITE FOR RESIDUE MG 0 8039
057DC3SOFTWAREU 0:172 , U 0:392 , HOH 0:8388 , HOH M:9338BINDING SITE FOR RESIDUE MG 0 8040
058DC4SOFTWAREC 0:195 , G 0:196 , A 0:227 , C 0:228 , HOH 0:4694 , HOH 0:4787BINDING SITE FOR RESIDUE MG 0 8041
059DC5SOFTWAREU 0:1309 , U 0:1346 , HOH 0:3060 , HOH 0:4253 , HOH 0:4995 , HOH 0:8336BINDING SITE FOR RESIDUE MG 0 8042
060DC6SOFTWAREG 0:816 , G 0:817 , HOH 0:3423 , HOH 0:7875 , MG 0:8106 , HOH 0:8389BINDING SITE FOR RESIDUE MG 0 8043
061DC7SOFTWAREC 0:2048 , C 0:2088 , A 0:2089 , HOH 0:3895 , GLY R:65 , HOH R:9496BINDING SITE FOR RESIDUE MG 0 8044
062DC8SOFTWAREG 0:1979 , HOH 0:8337 , HOH 0:8390 , HOH 0:8392BINDING SITE FOR RESIDUE MG 0 8045
063DC9SOFTWAREG 0:1794 , HOH 0:7759 , HOH 0:8393 , HOH 0:8394BINDING SITE FOR RESIDUE MG 0 8046
064DD1SOFTWAREU 0:1368 , HOH 0:5434 , HOH 0:6381 , HOH R:9463 , HOH R:9464BINDING SITE FOR RESIDUE SR 0 9629
065DD2SOFTWAREA 9:3056 , A 9:3057 , HOH 9:7361BINDING SITE FOR RESIDUE MG 9 8095
066DD3SOFTWAREG 9:3021 , G 9:3022 , U 9:3055 , A 9:3057 , G 9:3058 , C 9:3059BINDING SITE FOR RESIDUE NA 9 9183
067DD4SOFTWAREHOH 0:5554 , C 9:3091 , HOH H:9529BINDING SITE FOR RESIDUE SR 9 9481
068DD5SOFTWAREG 9:3078 , G 9:3102BINDING SITE FOR RESIDUE SR 9 9503
069DD6SOFTWAREHOH 9:120 , A 9:3044 , HOH 9:4351BINDING SITE FOR RESIDUE SR 9 9588
070DD7SOFTWAREA 0:2637 , HOH 0:8440 , C 5:75 , A 5:76BINDING SITE FOR RESIDUE MG 5 8118
071DD8SOFTWAREG 0:1873 , HOH 0:4929 , ASP A:26 , LEU A:27 , GLU A:28 , ARG A:120BINDING SITE FOR RESIDUE MG A 8066
072DD9SOFTWAREHOH 0:6910 , LYS A:178BINDING SITE FOR RESIDUE CL A 9309
073EC1SOFTWAREHOH 0:5066 , HOH 0:7540 , HOH 0:8407BINDING SITE FOR RESIDUE MG 0 8047
074EC2SOFTWAREC 0:2248BINDING SITE FOR RESIDUE MG 0 8050
075EC3SOFTWAREG 0:641 , A 0:1355 , HOH 0:4689 , HOH 0:8338 , HOH 0:8339BINDING SITE FOR RESIDUE MG 0 8051
076EC4SOFTWAREU 0:1125 , HOH 0:4219 , HOH 0:8409 , HOH 9:737 , HOH 9:2357 , G 9:3092BINDING SITE FOR RESIDUE MG 0 8052
077EC5SOFTWAREC 0:162 , A 0:169 , U 0:2276 , HOH 0:3056 , HOH 0:8292 , HOH 0:8340 , HOH 0:8341BINDING SITE FOR RESIDUE MG 0 8054
078EC6SOFTWAREC 0:2720 , HOH 0:6934 , GLY B:337 , HOH B:9550 , HOH B:9655 , HOH B:9656BINDING SITE FOR RESIDUE MG 0 8055
079EC7SOFTWAREA 0:2757 , HOH 0:4264 , HOH 0:8360 , ASN B:335 , GLY B:337 , HOH B:9540BINDING SITE FOR RESIDUE MG 0 8056
080EC8SOFTWAREU 0:1883 , U 0:2012 , G 0:2013 , HOH 0:5567 , HOH 0:8410 , GLN A:207BINDING SITE FOR RESIDUE MG 0 8057
081EC9SOFTWAREG 0:1884 , HOH 0:3524 , HOH 0:4357 , HOH 0:8343 , HOH A:9512BINDING SITE FOR RESIDUE MG 0 8058
082ED1SOFTWAREA 0:2633 , PHE A:201 , GLY A:202 , GLY A:203 , HIS A:208 , HOH A:9545 , HOH A:9585BINDING SITE FOR RESIDUE SR A 9436
083ED2SOFTWAREHOH 0:4929 , HOH 0:6463 , HOH 0:8424 , ASP A:26 , GLU A:28BINDING SITE FOR RESIDUE SR A 9437
084ED3SOFTWAREGLU A:28BINDING SITE FOR RESIDUE SR A 9497
085ED4SOFTWAREHOH 0:3204 , ARG B:223 , LYS B:224 , HIS B:227BINDING SITE FOR RESIDUE CL B 9319
086ED5SOFTWAREHOH 0:3557 , HOH 0:3849 , ASN B:243 , SER B:245BINDING SITE FOR RESIDUE SR B 9458
087ED6SOFTWAREC 0:2672 , PRO B:24 , ARG B:25 , ARG B:310BINDING SITE FOR RESIDUE SR B 9521
088ED7SOFTWAREASP C:45 , THR C:94 , LYS C:96 , HOH C:9111BINDING SITE FOR RESIDUE NA C 9104
089ED8SOFTWAREARG D:51BINDING SITE FOR RESIDUE NA D 9151
090ED9SOFTWAREHOH 0:5657BINDING SITE FOR RESIDUE SR F 9595
091FC1SOFTWAREG 0:2618 , HOH 0:4316 , HOH 0:4478 , MG 0:8085 , HOH 0:8300 , HOH 0:9664 , HOH 0:9668BINDING SITE FOR RESIDUE MG 0 8059
092FC2SOFTWAREG 0:175 , U 0:224 , G 0:393 , HOH 0:8346 , HOH 0:8347 , HOH 0:9795BINDING SITE FOR RESIDUE MG 0 8060
093FC3SOFTWAREA 0:1369 , U 0:2650 , HOH 0:8348 , HOH 0:8349 , HOH 0:8350BINDING SITE FOR RESIDUE MG 0 8061
094FC4SOFTWAREHOH 0:4767 , HOH 0:5586 , HOH 0:7490 , HOH 0:8285 , HOH 0:8359BINDING SITE FOR RESIDUE MG 0 8063
095FC5SOFTWAREG 0:782 , C 0:783 , HOH A:9511 , HOH A:9586 , HOH A:9616BINDING SITE FOR RESIDUE MG 0 8065
096FC6SOFTWAREA 0:1845 , U 0:1846 , G 0:1884 , HOH 0:8352 , ASN A:188 , ARG A:190BINDING SITE FOR RESIDUE MG 0 8067
097FC7SOFTWAREA 0:2569 , HOH 0:4345 , HOH 0:5382 , HOH 0:7172 , HOH 0:8412 , HOH E:920BINDING SITE FOR RESIDUE MG 0 8068
098FC8SOFTWAREA 0:166 , G 0:219 , HOH 0:3061 , HOH 0:4408 , HOH 0:5513 , HOH 0:6138 , HOH 0:9750BINDING SITE FOR RESIDUE MG 0 8070
099FC9SOFTWAREU 0:954 , C 0:2298 , HOH 0:4585BINDING SITE FOR RESIDUE MG 0 8072
100FD1SOFTWAREA 0:1133 , G 0:1134 , TYR H:154 , ILE H:157 , THR H:158 , PRO H:159BINDING SITE FOR RESIDUE SR H 9486
101FD2SOFTWAREHOH 0:3106 , HOH 0:6297 , ARG J:60 , VAL J:61 , ILE J:63 , TYR J:69BINDING SITE FOR RESIDUE NA J 9146
102FD3SOFTWAREASN J:126 , ILE J:127 , LYS J:128 , HOH J:4193BINDING SITE FOR RESIDUE CL J 9301
103FD4SOFTWAREPRO J:88 , LYS J:90BINDING SITE FOR RESIDUE CL J 9302
104FD5SOFTWAREHOH 0:6297 , GLY J:64 , ASN J:65 , GLY J:68 , TYR J:69BINDING SITE FOR RESIDUE CL J 9321
105FD6SOFTWAREHOH 0:4020 , HOH 0:4825 , HOH 0:6570 , ASN K:42 , HOH K:2121 , HOH K:3492 , HOH K:7871BINDING SITE FOR RESIDUE MG K 8069
106FD7SOFTWAREARG L:53BINDING SITE FOR RESIDUE CL L 9310
107FD8SOFTWAREHOH 0:4251 , HOH 0:9903 , ARG L:27 , GLU L:39 , HOH L:9432 , HOH L:9492BINDING SITE FOR RESIDUE SR L 9409
108FD9SOFTWARESER M:106 , PHE M:109 , PRO M:110 , LEU M:112 , HOH M:9430BINDING SITE FOR RESIDUE NA M 9147
109GC1SOFTWAREA 0:1286 , A 0:1287 , HOH 0:8353 , HOH 0:8354 , HOH W:7873 , HOH W:7874BINDING SITE FOR RESIDUE MG 0 8074
110GC2SOFTWAREA 0:907 , A 0:908 , HOH 0:4232 , HOH 0:4506 , HOH 0:5494 , HOH 0:8355BINDING SITE FOR RESIDUE MG 0 8075
111GC3SOFTWAREA 0:165 , A 0:167 , C 0:168 , HOH 0:4207 , HOH 0:4213 , HOH 0:4224BINDING SITE FOR RESIDUE MG 0 8079
112GC4SOFTWAREA 0:1684 , U 0:1724 , HOH 0:4792 , HOH 0:7181 , HOH 0:8365 , HOH 0:8416BINDING SITE FOR RESIDUE MG 0 8080
113GC5SOFTWAREC 0:1436 , A 0:1437 , HOH 0:5710 , HOH 0:5796 , HOH P:209BINDING SITE FOR RESIDUE MG 0 8082
114GC6SOFTWAREC 0:1753 , A 0:1754 , HOH 0:4302 , HOH 0:8366 , HOH 0:8417BINDING SITE FOR RESIDUE MG 0 8083
115GC7SOFTWAREA 0:1742 , HOH 0:3363 , HOH 0:4230 , HOH 0:8367BINDING SITE FOR RESIDUE MG 0 8084
116GC8SOFTWAREG 0:2617 , G 0:2618 , HOH 0:3223 , HOH 0:4381 , HOH 0:4937 , HOH 0:5056 , MG 0:8059BINDING SITE FOR RESIDUE MG 0 8085
117GC9SOFTWAREG 0:2540 , G 0:2611 , HOH 0:4876 , NA 0:9139 , HOH 0:9691 , HOH 0:9920BINDING SITE FOR RESIDUE MG 0 8088
118GD1SOFTWARESER M:106 , ARG M:113 , VAL M:114 , VAL M:159BINDING SITE FOR RESIDUE CL M 9318
119GD2SOFTWARELYS D:146 , ARG N:37 , LYS N:38 , ASN N:107BINDING SITE FOR RESIDUE CL N 9307
120GD3SOFTWAREHIS O:40 , HOH O:5650BINDING SITE FOR RESIDUE CD O 9205
121GD4SOFTWAREHOH 0:7512 , ASN O:44BINDING SITE FOR RESIDUE CL O 9308
122GD5SOFTWAREASN Q:16 , ASP Q:20 , GLY Q:22 , SER Q:24 , SER Q:46 , HOH Q:1795BINDING SITE FOR RESIDUE NA Q 9148
123GD6SOFTWAREHOH 0:4341 , NA 0:9138 , SER R:70 , VAL R:72 , HOH R:9435 , HOH R:9468BINDING SITE FOR RESIDUE NA R 9137
124GD7SOFTWAREU 0:12 , LYS R:60 , GLN R:61 , ASN R:63 , SR R:9418BINDING SITE FOR RESIDUE NA R 9186
125GD8SOFTWARELYS R:118 , HOH R:9421BINDING SITE FOR RESIDUE CL R 9306
126GD9SOFTWAREGLN R:61 , ASN R:63 , NA R:9186BINDING SITE FOR RESIDUE SR R 9418
127HC1SOFTWAREC 0:515 , A 0:516 , U 0:517 , G 0:518 , HOH 0:8370 , HOH 0:8418 , HOH 0:8419BINDING SITE FOR RESIDUE MG 0 8089
128HC2SOFTWAREA 0:2103 , U 0:2478 , HOH 0:4254 , HOH 0:4388BINDING SITE FOR RESIDUE MG 0 8090
129HC3SOFTWAREG 0:918 , C 0:2294 , HOH 0:3169 , HOH 0:6998 , HOH 0:8371 , HOH 0:9719BINDING SITE FOR RESIDUE MG 0 8091
130HC4SOFTWAREA 0:1843 , C 0:1844 , HOH 0:4240 , HOH 0:8420 , HOH A:9512BINDING SITE FOR RESIDUE MG 0 8092
131HC5SOFTWAREA 0:1070 , G 0:1071 , HOH 0:3301 , HOH 0:4246 , HOH 0:4277 , HOH 0:4317BINDING SITE FOR RESIDUE MG 0 8093
132HC6SOFTWAREU 0:1096 , G 0:1258 , HOH 0:8372BINDING SITE FOR RESIDUE MG 0 8094
133HC7SOFTWAREG 0:1848 , G 0:1849 , HOH 0:4258 , HOH 0:4295 , HOH 0:4426 , HOH 0:4456BINDING SITE FOR RESIDUE MG 0 8096
134HC8SOFTWAREU 0:862 , G 0:863 , U 0:864 , HOH 0:3940 , HOH 0:4268 , HOH 0:6100BINDING SITE FOR RESIDUE MG 0 8097
135HC9SOFTWAREA 0:907 , HOH 0:3550 , HOH 0:3968 , HOH 0:4279 , HOH 0:4340 , HOH Y:9367BINDING SITE FOR RESIDUE MG 0 8098
136HD1SOFTWAREHIS S:7 , GLU S:61 , HOH S:9482BINDING SITE FOR RESIDUE NA S 9112
137HD2SOFTWAREHOH 0:8413 , ASP S:59BINDING SITE FOR RESIDUE SR S 9470
138HD3SOFTWARETYR T:35 , GLN T:37 , LEU T:112 , SER T:114 , ASP T:117 , HOH T:2868BINDING SITE FOR RESIDUE MG T 8073
139HD4SOFTWARECYS U:6 , CYS U:9 , CYS U:32 , CYS U:36BINDING SITE FOR RESIDUE CD U 9201
140HD5SOFTWAREHIS Y:133 , LYS Y:136 , LYS Y:137 , VAL Y:139 , HOH Y:9359 , HOH Y:9381 , HOH Y:9413BINDING SITE FOR RESIDUE MG Y 8109
141HD6SOFTWAREARG Y:169BINDING SITE FOR RESIDUE CL Y 9320
142HD7SOFTWARECYS Z:39 , CYS Z:42 , CYS Z:57 , CYS Z:60BINDING SITE FOR RESIDUE CD Z 9203
143HD8SOFTWARECYS 1:19 , CYS 1:22 , CYS 1:34 , CYS 1:37BINDING SITE FOR RESIDUE CD 1 9202
144HD9SOFTWAREU 0:862 , HOH 0:5443 , LYS 1:10 , ASN 1:12 , HOH 1:9463 , HOH 1:9503BINDING SITE FOR RESIDUE SR 1 9419
145IC1SOFTWAREA 0:2612 , HOH 0:3619 , HOH 0:4262 , HOH 0:4275BINDING SITE FOR RESIDUE MG 0 8099
146IC2SOFTWAREU 0:2107 , C 0:2281 , U 0:2282 , HOH 0:4339 , HOH 0:5190BINDING SITE FOR RESIDUE MG 0 8101
147IC3SOFTWAREA 0:2434 , U 0:2458 , HOH 0:4263 , HOH 0:8430 , HOH 0:9876 , HOH 3:9449BINDING SITE FOR RESIDUE MG 0 8102
148IC4SOFTWAREG 0:2578 , G 0:2579 , HOH 0:8422BINDING SITE FOR RESIDUE MG 0 8103
149IC5SOFTWAREC 0:2104 , C 0:2105 , HOH 0:8282 , HOH 0:8283BINDING SITE FOR RESIDUE MG 0 8104
150IC6SOFTWAREG 0:817 , HOH 0:4197 , HOH 0:7871 , HOH 0:7875 , MG 0:8043 , HOH 0:8389 , HOH P:184BINDING SITE FOR RESIDUE MG 0 8106
151IC7SOFTWAREC 0:1104 , A 0:1106 , A 0:1107 , HOH 0:8398 , HOH 0:8399 , HOH 0:8401BINDING SITE FOR RESIDUE MG 0 8107
152IC8SOFTWAREHOH 0:7947 , HOH 0:8402 , HOH 0:8403 , HOH 0:8404BINDING SITE FOR RESIDUE MG 0 8108
153IC9SOFTWAREU 0:903 , A 0:1357 , HOH 0:3130 , HOH 0:4515 , HOH 0:5951 , HOH 0:6560BINDING SITE FOR RESIDUE MG 0 8110
154ID1SOFTWAREHOH 0:3832 , HOH 0:4472 , HOH 0:9926 , ASP 1:47 , HOH 1:9478 , HOH 1:9489BINDING SITE FOR RESIDUE SR 1 9460
155ID2SOFTWAREHOH 0:7344 , HOH 0:8361 , HOH 0:8362 , HOH 0:8413 , HOH 0:8414BINDING SITE FOR RESIDUE MG 2 8076
156ID3SOFTWARECYS 3:11 , CYS 3:14 , CYS 3:71 , CYS 3:74BINDING SITE FOR RESIDUE CD 3 9204
157ID4SOFTWAREASP 3:66BINDING SITE FOR RESIDUE CL 3 9304
158ID5SOFTWAREHOH 0:4546 , HOH 0:8415 , GLY 3:45 , GLY 3:47 , ASP 3:49BINDING SITE FOR RESIDUE SR 3 9439
159JC1SOFTWAREA 0:187 , HOH 0:3191 , HOH 0:4320 , HOH 0:4361 , HOH 0:9755 , HOH 0:9955BINDING SITE FOR RESIDUE MG 0 8112
160JC2SOFTWAREA 0:2112 , HOH 0:3211 , HOH 0:4346 , HOH 0:4513 , HOH 0:6654 , HOH 0:6915 , SR 0:9534BINDING SITE FOR RESIDUE MG 0 8113
161JC3SOFTWAREA 0:2430 , HOH 0:3073 , HOH 0:4553 , HOH 0:5378 , HOH 0:9973BINDING SITE FOR RESIDUE MG 0 8114
162JC4SOFTWAREHOH 0:4869 , HOH 0:4883 , HOH 0:7110 , HOH 0:7231 , MG 0:8116 , HOH A:9542BINDING SITE FOR RESIDUE MG 0 8115
163JC5SOFTWAREU 0:1850 , HOH 0:4258 , HOH 0:4283 , HOH 0:4456 , HOH 0:7231 , MG 0:8115 , HOH A:9542BINDING SITE FOR RESIDUE MG 0 8116
164JC6SOFTWAREA 0:1840 , C 0:1841 , A 0:2022 , HOH 0:5204 , HOH 0:7073 , HOH 0:9849BINDING SITE FOR RESIDUE MG 0 8117
165JC7SOFTWAREG 0:2102 , G 0:2482 , C 0:2536BINDING SITE FOR RESIDUE K 0 9001
166JC8SOFTWAREC 0:162 , U 0:163 , U 0:172 , HOH 0:9642 , HOH 0:9739 , ARG M:82 , HOH M:9324BINDING SITE FOR RESIDUE K 0 9002
167JC9SOFTWAREC 0:1069 , G 0:1072 , G 0:1087 , HOH 0:3773 , HOH 0:3804 , HOH 0:5525BINDING SITE FOR RESIDUE NA 0 9101
168KC1SOFTWAREG 0:1119 , U 0:1120 , G 0:1121 , HOH 0:4755 , MG 0:8025 , HOH 0:8314BINDING SITE FOR RESIDUE NA 0 9102
169KC2SOFTWAREA 0:630 , A 0:631 , HOH 0:4676 , HOH 0:5267 , HOH 0:6325BINDING SITE FOR RESIDUE NA 0 9105
170KC3SOFTWAREG 0:2092 , G 0:2093 , G 0:2094 , A 0:2649 , HOH 0:9754BINDING SITE FOR RESIDUE NA 0 9106
171KC4SOFTWAREC 0:40 , G 0:41 , A 0:442 , C 0:443BINDING SITE FOR RESIDUE NA 0 9107
172KC5SOFTWAREC 0:1394 , U 0:1432 , G 0:1433 , U 0:1724 , HOH 0:4010 , SR 0:9473BINDING SITE FOR RESIDUE NA 0 9108
173KC6SOFTWAREA 0:2577 , G 0:2578 , G 0:2579 , HOH 0:5077BINDING SITE FOR RESIDUE NA 0 9110
174KC7SOFTWAREU 0:2523 , G 0:2524 , G 0:2525 , HOH 0:4173 , HOH 0:5220BINDING SITE FOR RESIDUE NA 0 9111
175KC8SOFTWAREG 0:2399 , HOH 0:3560 , HOH 0:4427 , HOH 0:5624 , HOH 0:5673BINDING SITE FOR RESIDUE NA 0 9113
176KC9SOFTWAREU 0:2541 , U 0:2607 , HOH 0:3734 , HOH 0:9956 , TRP B:242BINDING SITE FOR RESIDUE NA 0 9114
177LC1SOFTWAREA 0:165 , A 0:166 , A 0:167 , HOH 0:3304BINDING SITE FOR RESIDUE NA 0 9115
178LC2SOFTWAREC 0:896 , A 0:897 , HOH 0:6831 , HOH 0:8219BINDING SITE FOR RESIDUE NA 0 9116
179LC3SOFTWAREG 0:1416 , G 0:1417 , HOH 0:9900 , TRP 2:42 , ASN 2:45 , HOH 2:4135BINDING SITE FOR RESIDUE NA 0 9117
180LC4SOFTWAREG 0:2543 , G 0:2544 , HOH 0:4519 , HOH 0:7958 , NA 0:9120 , HOH 0:9837BINDING SITE FOR RESIDUE NA 0 9118
181LC5SOFTWAREG 0:2543 , G 0:2544 , U 0:2615 , HOH 0:3355 , NA 0:9118BINDING SITE FOR RESIDUE NA 0 9120
182LC6SOFTWAREC 0:2287 , ARG H:114BINDING SITE FOR RESIDUE NA 0 9122
183LC7SOFTWAREG 0:885 , A 0:2112 , G 0:2113 , C 0:2475 , C 0:2476 , HOH 0:5051BINDING SITE FOR RESIDUE NA 0 9123
184LC8SOFTWAREC 0:130 , U 0:146 , G 0:147 , HOH 0:3115 , HOH 0:7627BINDING SITE FOR RESIDUE NA 0 9124
185LC9SOFTWAREA 0:776 , U 0:777 , U 0:779 , HOH 0:3247 , HOH 0:3877 , HOH 0:8194 , SR 0:9441BINDING SITE FOR RESIDUE NA 0 9125
186MC1SOFTWAREG 0:1971 , G 0:2009 , A 0:2010 , U 0:2012BINDING SITE FOR RESIDUE NA 0 9126
187MC2SOFTWAREU 0:821 , C 0:822 , C 0:853 , G 0:854 , U 0:1831 , HOH 0:3809BINDING SITE FOR RESIDUE NA 0 9127
188MC3SOFTWAREG 0:56 , A 0:59 , A 0:60 , G 0:61 , HOH 0:5768BINDING SITE FOR RESIDUE NA 0 9128
189MC4SOFTWAREG 0:66 , U 0:107 , U 0:108 , HOH 0:7090BINDING SITE FOR RESIDUE NA 0 9129
190MC5SOFTWAREG 0:140 , C 0:141 , G 0:142 , HOH 0:9859BINDING SITE FOR RESIDUE NA 0 9130
191MC6SOFTWAREU 0:170 , C 0:171 , C 0:218 , G 0:221 , HOH 0:3173 , HOH 0:9925BINDING SITE FOR RESIDUE NA 0 9131
192MC7SOFTWAREG 0:386 , G 0:387 , G 0:388 , C 0:401 , U 0:402 , HOH 0:7553BINDING SITE FOR RESIDUE NA 0 9132
193MC8SOFTWAREC 0:1894 , A 0:1895 , G 0:1896 , U 0:1897 , HOH 0:5801 , HOH 0:8434BINDING SITE FOR RESIDUE NA 0 9134
194MC9SOFTWAREC 0:621 , G 0:622 , U 0:623 , 1MA 0:628 , A 0:630 , HOH 0:3482BINDING SITE FOR RESIDUE NA 0 9135
195NC1SOFTWAREG 0:1706 , G 0:1707 , HOH 0:3532 , HOH 0:5890 , HOH 0:8222BINDING SITE FOR RESIDUE NA 0 9136
196NC2SOFTWAREU 0:2659 , G 0:2660 , VAL R:72 , TRP R:75 , NA R:9137 , HOH R:9426 , HOH R:9435BINDING SITE FOR RESIDUE NA 0 9138
197NC3SOFTWAREG 0:2540 , G 0:2611 , G 0:2616 , HOH 0:3632 , HOH 0:4876 , MG 0:8088 , HOH 0:9920BINDING SITE FOR RESIDUE NA 0 9139
198NC4SOFTWAREU 0:1740 , U 0:1741 , G 0:2033 , HOH 0:3641BINDING SITE FOR RESIDUE NA 0 9140
199NC5SOFTWAREG 0:681 , G 0:683 , HOH 0:4609 , HOH 0:8426BINDING SITE FOR RESIDUE NA 0 9141
200NC6SOFTWAREU 0:308 , U 0:335 , A 0:339 , C 0:342 , SER T:94 , ASN T:95 , HOH T:1124BINDING SITE FOR RESIDUE NA 0 9143
201NC7SOFTWAREA 0:914 , C 0:915 , C 0:1043 , G 0:1045 , HOH 0:6135BINDING SITE FOR RESIDUE NA 0 9149
202NC8SOFTWAREU 0:623 , U 0:624 , G 0:901 , HOH 0:7446BINDING SITE FOR RESIDUE NA 0 9150
203NC9SOFTWAREA 0:955 , HOH 0:7113 , C 9:3081 , U 9:3082BINDING SITE FOR RESIDUE NA 0 9152
204OC1SOFTWAREU 0:768 , C 0:769 , G 0:2111 , A 0:2112 , HOH 0:5379 , HOH 0:8129BINDING SITE FOR RESIDUE NA 0 9154
205OC2SOFTWAREG 0:1119 , C 0:1243 , HOH 0:5371 , THR J:47BINDING SITE FOR RESIDUE NA 0 9155
206OC3SOFTWAREC 0:920 , U 0:2278 , G 0:2279 , A 0:2463 , HOH 0:3076BINDING SITE FOR RESIDUE NA 0 9156
207OC4SOFTWAREG 0:941 , U 0:942 , G 0:1024 , HOH 0:6794BINDING SITE FOR RESIDUE NA 0 9157
208OC5SOFTWAREG 0:2611 , HOH 0:3107 , MG 0:8009 , HOH 0:9958 , TRP B:242BINDING SITE FOR RESIDUE NA 0 9158
209OC6SOFTWAREG 0:898 , A 0:922 , A 0:923 , G 0:924 , U 0:2109BINDING SITE FOR RESIDUE NA 0 9159
210OC7SOFTWAREA 0:453 , U 0:454 , C 0:478 , G 0:479 , HOH 0:6485BINDING SITE FOR RESIDUE NA 0 9160
211OC8SOFTWAREU 0:837 , HOH 0:5159 , HOH 0:5652 , HOH 0:7314 , GLN B:230BINDING SITE FOR RESIDUE NA 0 9161
212OC9SOFTWAREA 0:167 , C 0:168 , G 0:2110 , G 0:2111 , U 0:2277BINDING SITE FOR RESIDUE NA 0 9162
213PC1SOFTWAREU 0:1359 , C 0:1360 , HOH 0:4076 , HOH 0:7528BINDING SITE FOR RESIDUE NA 0 9163
214PC2SOFTWAREU 0:2057 , G 0:2058 , HOH 0:3426BINDING SITE FOR RESIDUE NA 0 9164
215PC3SOFTWAREU 0:391 , U 0:392 , U 0:398 , C 0:399 , LYS M:193 , ALA M:194BINDING SITE FOR RESIDUE NA 0 9165
216PC4SOFTWAREG 0:544 , G 0:545 , G 0:610 , U 0:611 , HOH 0:3493 , HOH 0:4413 , HOH 0:4471BINDING SITE FOR RESIDUE NA 0 9166
217PC5SOFTWAREG 0:464 , G 0:475 , HOH 0:3439 , HOH 0:5050 , ARG C:55BINDING SITE FOR RESIDUE NA 0 9167
218PC6SOFTWAREG 0:798 , G 0:814 , U 0:815BINDING SITE FOR RESIDUE NA 0 9168
219PC7SOFTWAREU 0:392 , HOH 0:3362 , SR 0:9461 , ARG 3:42 , ASN 3:43 , HOH 3:9498BINDING SITE FOR RESIDUE NA 0 9169
220PC8SOFTWAREU 0:1831 , C 0:2021 , HOH 0:4368 , HOH 0:4688 , HOH 0:9731BINDING SITE FOR RESIDUE NA 0 9170
221PC9SOFTWAREG 0:2491 , U 0:2492 , G 0:2529BINDING SITE FOR RESIDUE NA 0 9171
222QC1SOFTWAREU 0:919 , G 0:924 , HOH 0:9896BINDING SITE FOR RESIDUE NA 0 9172
223QC2SOFTWAREG 0:1576 , U 0:1577 , G 0:1618 , G 0:1619 , C 0:1620 , HOH 0:7763BINDING SITE FOR RESIDUE NA 0 9173
224QC3SOFTWAREC 0:195 , G 0:196 , A 0:415 , G 0:416 , HOH 0:3504BINDING SITE FOR RESIDUE NA 0 9174
225QC4SOFTWAREG 0:868 , G 0:869 , A 0:886 , G 0:887 , HOH 0:9887BINDING SITE FOR RESIDUE NA 0 9175
226QC5SOFTWAREG 0:911 , U 0:1293 , G 0:1295 , HOH 0:6859BINDING SITE FOR RESIDUE NA 0 9177
227QC6SOFTWAREC 0:762 , G 0:902 , U 0:903 , HOH 0:3813 , HIS L:18 , HOH L:9425 , HOH L:9446BINDING SITE FOR RESIDUE NA 0 9178
228QC7SOFTWAREU 0:831 , U 0:832 , G 0:833 , HOH 0:4308 , HOH 0:5001BINDING SITE FOR RESIDUE NA 0 9179
229QC8SOFTWAREG 0:2585 , U 0:2586 , OMU 0:2587 , G 0:2592 , HOH 0:4285 , HOH 0:7555 , HOH 0:9914 , HOH 0:9954BINDING SITE FOR RESIDUE NA 0 9181
230QC9SOFTWAREG 0:2772 , G 0:2773BINDING SITE FOR RESIDUE NA 0 9182
231RC1SOFTWAREC 0:197 , HOH 0:5804BINDING SITE FOR RESIDUE NA 0 9184
232RC2SOFTWAREA 0:1079 , HOH 0:5748 , HOH 0:8215BINDING SITE FOR RESIDUE NA 0 9185
233RC3SOFTWAREG 0:1676BINDING SITE FOR RESIDUE CL 0 9303
234RC4SOFTWAREC 0:197 , G 0:201 , U 0:202BINDING SITE FOR RESIDUE CL 0 9305
235RC5SOFTWAREC 0:2388 , HOH 0:3767 , PHE Q:52 , HIS Q:53 , PHE Q:56BINDING SITE FOR RESIDUE CL 0 9311
236RC6SOFTWAREG 0:2582 , A 0:2596 , LYS K:14 , ILE K:32 , SER K:33BINDING SITE FOR RESIDUE CL 0 9312
237RC7SOFTWAREG 0:1300 , A 0:1328 , A 0:1329 , HOH 0:5226 , HOH 0:5507BINDING SITE FOR RESIDUE CL 0 9313
238RC8SOFTWAREG 0:644 , HIS L:13 , HOH L:9490BINDING SITE FOR RESIDUE CL 0 9314
239RC9SOFTWAREA 0:1597 , A 0:1598 , G 0:1646BINDING SITE FOR RESIDUE CL 0 9315
240SC1SOFTWAREG 0:1119 , C 0:1243 , LYS J:56BINDING SITE FOR RESIDUE CL 0 9316
241SC2SOFTWAREC 0:594 , U 0:595 , HOH Y:9333 , HOH Y:9353BINDING SITE FOR RESIDUE CL 0 9317
242SC3SOFTWAREG 0:1072 , G 0:1087 , A 0:1291BINDING SITE FOR RESIDUE CL 0 9322
243SC4SOFTWAREG 0:824 , G 0:854 , HOH 0:4547 , HOH 0:4874 , HOH 0:5101BINDING SITE FOR RESIDUE SR 0 9405
244SC5SOFTWAREG 0:836 , U 0:2615 , HOH 0:4430 , HOH 0:9894 , HOH 0:9985 , GLN B:230BINDING SITE FOR RESIDUE SR 0 9406
245SC6SOFTWAREG 0:1489 , G 0:1491 , HOH 0:3021 , HOH 0:4228 , HOH 0:4545 , HOH 0:6704BINDING SITE FOR RESIDUE SR 0 9407
246SC7SOFTWAREU 0:832 , A 0:1839 , A 0:1840 , HOH 0:3956 , HOH 0:8291 , HOH 0:9635 , HOH 0:9728BINDING SITE FOR RESIDUE SR 0 9408
247SC8SOFTWAREA 0:643 , C 0:1353 , G 0:1354 , HOH 0:3054 , HOH 0:7092 , HOH 0:8437BINDING SITE FOR RESIDUE SR 0 9410
248SC9SOFTWAREA 0:1754 , A 0:1755 , HOH 0:7100 , HOH 0:7641 , HOH 0:8127BINDING SITE FOR RESIDUE SR 0 9411
249TC1SOFTWAREC 0:893 , HOH 0:6173 , HOH 0:8436 , HOH C:9150BINDING SITE FOR RESIDUE SR 0 9412
250TC2SOFTWAREG 0:1055 , HOH 0:4419 , HOH 0:5388 , HOH 0:6846 , ASP H:10 , HOH H:9509BINDING SITE FOR RESIDUE SR 0 9413
251TC3SOFTWAREU 0:146 , G 0:147 , G 0:182 , A 0:183 , ASP M:157 , HOH M:9441BINDING SITE FOR RESIDUE SR 0 9414
252TC4SOFTWAREHOH 0:4360 , HOH 0:6054 , HOH 0:6676 , HOH 0:7104 , HOH 0:7383 , HOH 0:8373 , HOH 0:8374BINDING SITE FOR RESIDUE SR 0 9415
253TC5SOFTWAREA 0:1747 , U 0:1748 , U 0:1749 , G 0:2585 , HOH 0:3295 , HOH 0:4407BINDING SITE FOR RESIDUE SR 0 9416
254TC6SOFTWAREC 0:85 , A 0:86 , C 0:87 , HOH 0:5905 , ASP T:68BINDING SITE FOR RESIDUE SR 0 9417
255TC7SOFTWAREHOH 0:4736 , HOH 0:5439 , HOH 0:5773BINDING SITE FOR RESIDUE SR 0 9420
256TC8SOFTWAREU 0:664 , G 0:681 , HOH 0:7420 , HOH C:9144BINDING SITE FOR RESIDUE SR 0 9421
257TC9SOFTWAREC 0:1420 , C 0:1421 , G 0:1438 , HOH 0:4684 , HOH 0:5989BINDING SITE FOR RESIDUE SR 0 9422
258UC1SOFTWAREU 0:454 , C 0:478 , HOH 0:4805 , HOH 0:6190 , HOH 0:6670BINDING SITE FOR RESIDUE SR 0 9423
259UC2SOFTWAREA 0:1504 , A 0:1678 , C 0:1679 , HOH 0:8304 , HOH 0:8305 , HOH 0:8323BINDING SITE FOR RESIDUE SR 0 9424
260UC3SOFTWAREG 0:2543 , C 0:2608 , C 4:74BINDING SITE FOR RESIDUE SR 0 9425
261UC4SOFTWAREG 0:2632 , HOH 0:3897 , HOH 0:5114 , HOH 0:6028BINDING SITE FOR RESIDUE SR 0 9426
262UC5SOFTWAREA 0:1717 , G 0:1718 , HOH 0:5122 , HOH 0:5894BINDING SITE FOR RESIDUE SR 0 9427
263UC6SOFTWAREG 0:471 , HOH 0:3645 , HOH 0:4976 , HOH 0:6162 , HOH 0:7964 , HOH 0:9829 , HOH 0:9866BINDING SITE FOR RESIDUE SR 0 9428
264UC7SOFTWAREG 0:1059 , C 0:1127 , HOH 0:4415 , HOH 0:5868 , HOH 0:9743BINDING SITE FOR RESIDUE SR 0 9429
265UC8SOFTWAREA 0:639 , G 0:640 , HOH 0:3251 , HOH 0:3509 , HOH 0:4574 , HOH 0:5380 , HOH 0:5819 , HOH 0:6576BINDING SITE FOR RESIDUE SR 0 9430
266UC9SOFTWAREG 0:2725 , G 0:2755 , HOH 0:3871 , HOH 0:6857 , HOH 0:7175BINDING SITE FOR RESIDUE SR 0 9431
267VC1SOFTWAREG 0:503BINDING SITE FOR RESIDUE SR 0 9432
268VC2SOFTWAREHOH 0:3941 , HOH 0:6321 , HOH 0:6965BINDING SITE FOR RESIDUE SR 0 9433
269VC3SOFTWAREA 0:2553 , HOH 0:3210 , HOH 0:4244BINDING SITE FOR RESIDUE SR 0 9434
270VC4SOFTWAREU 0:1109 , G 0:1110 , A 0:1247 , HOH 0:4052 , HOH 0:7456BINDING SITE FOR RESIDUE SR 0 9435
271VC5SOFTWAREG 0:1543 , HOH 0:6610 , HOH 0:6621BINDING SITE FOR RESIDUE SR 0 9438
272VC6SOFTWAREA 0:532 , U 0:533 , HOH 0:4326 , HOH 0:4564 , HOH 0:8368 , HOH 0:8369BINDING SITE FOR RESIDUE SR 0 9440
273VC7SOFTWAREU 0:777 , U 0:864 , HOH 0:3247 , HOH 0:3877 , HOH 0:4268 , HOH 0:4272 , HOH 0:7930 , MG 0:8031 , NA 0:9125BINDING SITE FOR RESIDUE SR 0 9441
274VC8SOFTWAREG 0:2421 , U 0:2422 , C 0:2423 , HOH 0:8396 , HOH 0:8397BINDING SITE FOR RESIDUE SR 0 9442
275VC9SOFTWAREA 0:1291 , G 0:1292 , HOH 0:3824 , HOH 0:4210 , HOH 0:7920 , HOH 0:8378BINDING SITE FOR RESIDUE SR 0 9443
276WC1SOFTWAREC 0:880 , A 0:882 , U 0:883 , HOH 0:4218 , HOH 0:8363 , HOH 0:8364 , HOH 0:9865BINDING SITE FOR RESIDUE SR 0 9444
277WC2SOFTWAREHOH 0:4877 , HOH 0:7016 , HOH 0:7992BINDING SITE FOR RESIDUE SR 0 9445
278WC3SOFTWAREHOH 0:5573 , HOH 0:5735 , HOH 0:6663BINDING SITE FOR RESIDUE SR 0 9446
279WC4SOFTWAREG 0:84 , C 0:85 , HOH 0:6151 , ASP T:68BINDING SITE FOR RESIDUE SR 0 9447
280WC5SOFTWAREA 0:2465 , G 0:2466 , HOH 0:4845 , HOH 0:8432 , ASP L:36 , HOH L:9431BINDING SITE FOR RESIDUE SR 0 9448
281WC6SOFTWAREG 0:1683 , U 0:1696 , HOH 0:3396 , HOH 0:5320 , HOH 0:5400BINDING SITE FOR RESIDUE SR 0 9449
282WC7SOFTWAREA 0:2746 , U 0:2749 , G 0:2750 , HOH 0:6411 , HOH 0:6781 , HOH 0:8429BINDING SITE FOR RESIDUE SR 0 9450
283WC8SOFTWAREA 0:1885 , A 0:1886 , U 0:1887 , HOH 0:6644 , HOH 0:7846BINDING SITE FOR RESIDUE SR 0 9451
284WC9SOFTWAREU 0:2016 , HOH 0:8077BINDING SITE FOR RESIDUE SR 0 9452
285XC1SOFTWAREG 0:1484 , HOH 0:4310 , HOH 0:8328 , HOH 0:8384 , HOH 0:8385BINDING SITE FOR RESIDUE SR 0 9453
286XC2SOFTWAREG 0:2091 , HOH 0:3690 , HOH 0:6630 , HOH 0:7183BINDING SITE FOR RESIDUE SR 0 9454
287XC3SOFTWAREC 0:1690 , HOH 0:3069 , HOH 0:4336 , HOH 0:4637 , HOH 0:5273BINDING SITE FOR RESIDUE SR 0 9455
288XC4SOFTWAREA 0:2302 , A 0:2303 , HOH 0:4238 , HOH 0:4363 , HOH 0:5426BINDING SITE FOR RESIDUE SR 0 9456
289XC5SOFTWAREU 0:821 , C 0:822 , G 0:854 , U 0:855 , HOH 0:3418 , HOH 0:4214 , HOH 0:4347BINDING SITE FOR RESIDUE SR 0 9457
290XC6SOFTWAREG 0:2696BINDING SITE FOR RESIDUE SR 0 9459
291XC7SOFTWAREU 0:391 , HOH 0:3630 , HOH 0:5988 , NA 0:9169 , ARG 3:42 , HOH 3:9480BINDING SITE FOR RESIDUE SR 0 9461
292XC8SOFTWAREG 0:2810 , HOH 0:4634 , HOH 0:8136 , ASN B:27BINDING SITE FOR RESIDUE SR 0 9462
293XC9SOFTWAREU 0:2557 , HOH 0:3662 , HOH 0:7166BINDING SITE FOR RESIDUE SR 0 9464
294YC1SOFTWAREA 0:682 , G 0:683 , HOH 0:8426 , HOH 0:8439BINDING SITE FOR RESIDUE SR 0 9465
295YC2SOFTWAREC 0:1462 , A 0:1463 , GLY 1:40BINDING SITE FOR RESIDUE SR 0 9466
296YC3SOFTWAREA 0:1133 , G 0:1134 , HOH 0:3050 , HOH 0:5354BINDING SITE FOR RESIDUE SR 0 9467
297YC4SOFTWAREU 0:1972 , HOH 0:3290 , HOH 0:3902BINDING SITE FOR RESIDUE SR 0 9468
298YC5SOFTWAREG 0:1113 , HOH 0:4289 , HOH 0:4299BINDING SITE FOR RESIDUE SR 0 9469
299YC6SOFTWAREU 0:1432 , G 0:1433 , U 0:1724 , HOH 0:4038 , HOH 0:4187 , NA 0:9108BINDING SITE FOR RESIDUE SR 0 9473
300YC7SOFTWAREG 0:2284 , HOH 0:6065 , HOH 0:8242BINDING SITE FOR RESIDUE SR 0 9474
301YC8SOFTWAREG 0:2777 , HOH 0:4784 , HOH 0:7824BINDING SITE FOR RESIDUE SR 0 9475
302YC9SOFTWAREA 0:1815 , HOH 0:8034 , HOH 0:8357BINDING SITE FOR RESIDUE SR 0 9477
303ZC1SOFTWAREC 0:235 , HOH 0:5268 , HOH 0:5999 , HOH 0:6130 , HOH 0:6677 , HOH 0:8053BINDING SITE FOR RESIDUE SR 0 9478
304ZC2SOFTWAREU 0:2690 , HOH 0:3657 , HOH 0:6082BINDING SITE FOR RESIDUE SR 0 9480
305ZC3SOFTWAREA 0:1040 , G 0:1295 , A 0:1296 , HOH 0:5435 , GLY L:14 , HOH L:9491BINDING SITE FOR RESIDUE SR 0 9482
306ZC4SOFTWAREA 0:565 , G 0:592 , HOH 0:5771BINDING SITE FOR RESIDUE SR 0 9483
307ZC5SOFTWAREHOH 0:6137BINDING SITE FOR RESIDUE SR 0 9484
308ZC6SOFTWAREHOH 0:6969 , HOH 0:7764 , HOH 0:7914BINDING SITE FOR RESIDUE SR 0 9488
309ZC7SOFTWAREU 0:1835 , HOH 0:3583BINDING SITE FOR RESIDUE SR 0 9489
310ZC8SOFTWAREC 0:1894 , U 0:1897 , G 0:1898 , U 0:1939 , HOH 0:8434BINDING SITE FOR RESIDUE SR 0 9490
311ZC9SOFTWAREC 0:1129 , HOH 0:4219 , HOH 0:6625 , HOH 0:7410 , HOH 0:8409 , C 9:3091 , G 9:3092 , HOH 9:3843BINDING SITE FOR RESIDUE SR 0 9498

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VQN)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Trp A:186 -Pro A:187
2Gly B:14 -Pro B:15
3Asn B:243 -Pro B:244
4Val C:136 -Pro C:137
5Gln F:55 -Pro F:56
6Arg M:184 -Pro M:185

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 2)

Asymmetric/Biological Unit (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_RL6_HALMA_001 *R3SRL6_HALMA  ---  ---ER2S
2UniProtVAR_RL6_HALMA_002 *E24SRL6_HALMA  ---  ---EE23S
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (26, 26)

Asymmetric/Biological Unit (26, 26)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIBOSOMAL_L37EPS01077 Ribosomal protein L37e signature.RL37_HALMA5-24  11:4-23
2RIBOSOMAL_L19EPS00526 Ribosomal protein L19e signature.RL19E_HALMA7-26  1P:6-25
3RIBOSOMAL_L24EPS01073 Ribosomal protein L24e signature.RL24E_HALMA9-26  1U:8-25
4RIBOSOMAL_L30PS00634 Ribosomal protein L30 signature.RL30_HALMA20-52  1W:20-52
5RIBOSOMAL_L39EPS00051 Ribosomal protein L39e signature.RL39_HALMA29-45  12:28-44
6RIBOSOMAL_L18EPS01106 Ribosomal protein L18e signature.RL18E_HALMA32-49  1O:31-48
7RIBOSOMAL_L21EPS01171 Ribosomal protein L21e signature.RL21_HALMA37-62  1Q:36-61
8RIBOSOMAL_L5PS00358 Ribosomal protein L5 signature.RL5_HALMA42-58  1D:41-57
9RIBOSOMAL_L29PS00579 Ribosomal protein L29 signature.RL29_HALMA43-57  1V:42-56
10RIBOSOMAL_L24PS01108 Ribosomal protein L24 signature.RL24_HALMA46-63  1T:45-62
11RIBOSOMAL_L15EPS01194 Ribosomal protein L15e signature.RL15E_HALMA48-71  1M:47-70
12RIBOSOMAL_L31EPS01144 Ribosomal protein L31e signature.RL31_HALMA49-63  1X:48-62
13RIBOSOMAL_L44EPS01172 Ribosomal protein L44e signature.RL44E_HALMA60-71  13:60-71
14RIBOSOMAL_L23PS00050 Ribosomal protein L23 signature.RL23_HALMA63-78  1S:62-77
15RIBOSOMAL_L7AEPS01082 Ribosomal protein L7Ae signature.RL7A_HALMA68-85  1F:67-84
16RIBOSOMAL_L14PS00049 Ribosomal protein L14 signature.RL14_HALMA71-97  1K:71-97
17RIBOSOMAL_L13PS00783 Ribosomal protein L13 signature.RL13_HALMA83-106  1J:83-106
18RIBOSOMAL_L1EPS00939 Ribosomal protein L1e signature.RL4_HALMA103-129  1C:103-129
19RIBOSOMAL_L15PS00475 Ribosomal protein L15 signature.RL15_HALMA108-138  1L:107-137
20RIBOSOMAL_L10EPS01257 Ribosomal protein L10e signature.RL10E_HALMA109-130  1H:111-127
21RIBOSOMAL_L11PS00359 Ribosomal protein L11 signature.RL11_HALMA122-137  1I:126-140
22RIBOSOMAL_L22PS00464 Ribosomal protein L22 signature.RL22_HALMA124-148  1R:123-147
23RIBOSOMAL_L32EPS00580 Ribosomal protein L32e signature.RL32_HALMA129-149  1Y:128-148
24RIBOSOMAL_L6_2PS00700 Ribosomal protein L6 signature 2.RL6_HALMA151-172  1E:150-171
25RIBOSOMAL_L2PS00467 Ribosomal protein L2 signature.RL2_HALMA188-199  1A:187-198
26RIBOSOMAL_L3PS00474 Ribosomal protein L3 signature.RL3_HALMA195-218  1B:194-217

(-) Exons   (0, 0)

(no "Exon" information available for 1VQN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain 0 from PDB  Type:RNA  Length:2754
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                1vqn 0   10 UAUGCCAGCUGGUGGAUUGCUCGGCUCAGGCGCUGAUGAAGGACGUGCCAAGCUGCGAUAAGCCAUGGGGAGCCGCACGGAGGCGAAGAACCAUGGAUUUCCGAAUGAGAAUCUCUAACAAUUGCUUCGCGCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAACGCAAUGUGAUGUCGUUAGUAACCGCGAGUGAACGCGAUACAGCCCAAACCGAAGCCCUCACGGGCAAUGUGGUGUCAGGGCUACCUCUCAUCAGCCGACCGUCUCGACGAAGUCUCUUGGAACAGAGCGUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUACGACGUGCGGUAGUGCCAGAGUAGCGGGGGUUGGAUAUCCCUCGCGAAUAACGCAGGCAUCGACUGCGAAGGCUAAACACAACCUGAGACCGAUAGUGAACAAGUAGUGUGAACGAACGCUGCAAAGUACCCUCAGAAGGGAGGCGAAAUAGAGCAUGAAAUCAGUUGGCGAUCGAGCGACAGGGCAUACAAGGUCCCUCGACGAAUGACCGACGCGCGAGCGUCCAGUAAGACUCACGGGAAGCCGAUGUUCUGUCGUACGUUUUGaAAAACGAGCCAGGGAGUGUGUCUGCAUGGCAAGUCUAACCGGAGUAUCCGGGGAGGCACAGGGAAACCGACAUGGCCGCAGGGCUUGCCCGAGGGCCGCCGUCUUCAAGGGCGGGGAGCCAUGUGGACACGACCCGAAUCCGGACGAUCUACGCAUGGACAAGAUGAAGCGUGCCGAAAGGCACGUGGAAGUCUGUUAGAGUUGGUGUCCUACAAUACCCUCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGGCAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUAGUCUGUGAGGUAGAGCGACCGAUUGGUCCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGGAUUCCGGUGCGCGGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCCCAAGUGUGGAUUAAGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAAGAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAAUGAUCGGGACUCAAAUCCACCACCGAGACCUGUCCGUACCACUCAUACUGGUAAUCGAGUAGAUUGGCGCUCUAAUUGGAUGGAAGUAGGGGUGAAAACUCCUAUGGACCGAUUAGUGACGAAAAUCCUGGCCAUAGUAGCAGCGAUAGUCGGGUGAGAACCCCGACGGCCUAAUGGAUAAGGGUUCCUCAGCACUGCUGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCAACUCGACUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCACUAUGCAGUGAAAGUUGACGCCCUGGGGUCGAUCACGCUGGGCAUCGCCCAGUCGAACCGUCCAACUCCGUGGAAGCCGUAAUGGCAGGAAGCGGACGAACGGCGGCAUAGGGAAACGUGAUUCAACCUGGGGCCCAUGAAAAGACGAGCAUAGUGUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCCAAGGCCUGUCGGGAGCAACCAACGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCUCCGGAACGGAGCAGGUCGCAGUGACUCGGAAGCUCGGACUGUCUAGUAACAACAUAGGUGACCGCAAAUCCGCAAGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGGGGGUCUUAAGGUAGCGUAGUACCUUGCCGCAUCAGUAGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUGUCCCAACGUUGGGCCCGGUGAACUGUACAUUCCAGUGCGGAGUCUGGAGACACCCAGGGGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAGGACUCUCACUCCGGGAGGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGGGACCCGGCGAAGAGUGCAAGAGCAAAAGAUAGCUUGACAGUGUUCUUCCCAACGAGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAGCCUGCUUGAUGCGGGCAAUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUugUUCGCCUAUUAAAGGAGGUCGUGAGCUGGGuUuAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUGUAGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUCGAGAGAGCACGUGCCGGGUAGCCACGCCACACGGGGUAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAAAAGAGACACCGCCGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAGGUAACGAGACGUUAAGCCCACGAGCACUAACAGACCAA 2914
                                    19        29        39        49        59        69        79        89        99       109       119     ||131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621      |631       641       651       661       671       681       691       701       711  ||   722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490      1500      1510      1520      1530      1540      1550      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651      1661      1671      1681      1691      1701      1711      1721      1731      1741      1751      1761      1771      1781      1791      1801      1811      1821      1831      1841      1851      1861      1871      1881      1891      1901      1911      1921      1931      1941      1951|     1973      1983      1993      2003      2013      2023      2033      2043      2053      2063      2073      2083      2093      2103      2113      2123      2133  ||  2243      2253      2263      2273      2283      2293      2303      2313      2323      2333    ||2348      2358      2368      2378      2388      2398      2408      2418      2428      2438      2448      2458      2468      2478      2488      2498      2508      2518      2528      2538      2548      2558      2568      2578      2588      2598      2608      2618| |   2628      2638      2648      2658     |2670      2680      2690      2700      2710      2720      2730      2740      2750      2760      2770      2780      2790      2800      2810      2820      2830      2840      2850      2860      2870      2880      2890      2900      2910    
                                                                                                                                             125|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 628-1MA                                                                               714|                                                                                                                                                                                                                                                           970|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            1559|                                                                                                                                                                                                                                                                                                                                                                                                  1951|                                                                                                                                                                        2136|                                                                                                 2338|                                                                                                                                                                                                                                               2587-OMU                        2619-UR3                                     2664|                                                                                                                                                                                                                                                       
                                                                                                                                              128                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        716                                                                                                                                                                                                                                                            999                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             1561                                                                                                                                                                                                                                                                                                                                                                                                   1964                                                                                                                                                                         2237                                                                                                  2344                                                                                                                                                                                                                                                2588-OMG                         2621-PSU                                    2667                                                                                                                                                                                                                                                       

Chain 1 from PDB  Type:PROTEIN  Length:56
 aligned with RL37_HALMA | P32410 from UniProtKB/Swiss-Prot  Length:57

    Alignment length:56
                                    11        21        31        41        51      
          RL37_HALMA      2 TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAGE   57
               SCOP domains d1vqn11 1:1-56 Ribosomal protein L37e                    SCOP domains
               CATH domains 1vqn100 1:1-56  [code=2.20.25.30, no name defined]       CATH domains
               Pfam domains -Ribosomal_L37e-1vqn101 1:2-56                           Pfam domains
         Sec.struct. author ...hhhhhh......eee......eeee....ee.............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---RIBOSOMAL_L37E      --------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                1vqn 1    1 TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAGE   56
                                    10        20        30        40        50      

Chain 2 from PDB  Type:PROTEIN  Length:46
 aligned with RL39_HALMA | P22452 from UniProtKB/Swiss-Prot  Length:50

    Alignment length:49
                                    11        21        31        41         
          RL39_HALMA      2 GKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTDE   50
               SCOP domains d1vqn21 2:1-49 Ribosomal protei   n L39e          SCOP domains
               CATH domains 1vqn200 2:1-49                                    CATH domains
               Pfam domains ------Ribosomal_L39-1vqn201 2:7   -49             Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh...hhhhhhhhh.---............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------RIBOSOMAL_L39E   ----- PROSITE
                 Transcript ------------------------------------------------- Transcript
                1vqn 2    1 GKKSKATKKRLAKLDNQNSRVPAWVMLKTDR---RNHKRRHWRRNDTDE   49
                                    10        20        30|   |   40         
                                                         31  35              

Chain 3 from PDB  Type:PROTEIN  Length:92
 aligned with RL44E_HALMA | P32411 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:92
                                    10        20        30        40        50        60        70        80        90  
         RL44E_HALMA      1 MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLREGWRAGRLEFQE   92
               SCOP domains d1vqn31 3:1-92 Ribosomal protein L44e                                                        SCOP domains
               CATH domains 1vqn300 3:1-92  [code=3.10.450.80, no name defined]                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.eeeeee....eeeeeeeee.........hhhhhhhhhhh....hhhhhh............eeeee.....eee.........eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -----------------------------------------------------------RIBOSOMAL_L4--------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                1vqn 3    1 MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLREGWRAGRLEFQE   92
                                    10        20        30        40        50        60        70        80        90  

Chain 4 from PDB  Type:DNA/RNA  Length:4
                                     
                1vqn 4   74 CCax   77
                              ||
                             76-PPU
                              77-HFA

Chain 5 from PDB  Type:OTHER/PROTEIN/RNA  Length:6
                                       
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                1vqn 5   74 CCAFxx   79
                                ||
                                ||
                               78-ACA
                                79-BTN

Chain 9 from PDB  Type:RNA  Length:122
                                                                                                                                                           
                1vqn 9 3001 UUAGGCGGCCACAGCGGUGGGGUUGCCUCCCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCAGCGUUCCGGGGAGUACUGGAGUGCGCGAGCCUCUGGGAAACCCGGUUCGCCGCCACC 3122
                                  3010      3020      3030      3040      3050      3060      3070      3080      3090      3100      3110      3120  

Chain A from PDB  Type:PROTEIN  Length:237
 aligned with RL2_HALMA | P20276 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       
           RL2_HALMA      2 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG  238
               SCOP domains d1vqna2 A:1-90 N-terminal domain of ribosomal protein L2                                  d1vqna1 A:91-237 C-terminal domain of ribosomal protein L2                                                                                          SCOP domains
               CATH domains 1vqnA01 A:1-78 Nucleic acid-binding proteins                                  ---1vqnA02 A:82-159  [code=2.30.30.30, no name defined]                          1vqnA03 A:160-237 Ribosomal protein L2, domain 3                               CATH domains
               Pfam domains ---------Ribosomal_L2-1vqnA02 A:10-82                                             -----Ribosomal_L2_C-1vqnA01 A:88-221                                                                                                       ---------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.hhhhh...............eeeeeeeee......eeeeeee....eeee..........eee...........eee.hhh....eee...................eeeee.....eeee.....eeee....eeee......hhhhh...hhhhhhhhhh.........hhhhhhhhhh..............ee...........ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L2--------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn A    1 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG  237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       

Chain B from PDB  Type:PROTEIN  Length:337
 aligned with RL3_HALMA | P20279 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:337
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
           RL3_HALMA      2 PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPNDQPRLDPEVRYVSNESNQG  338
               SCOP domains d1vqnb1 B:1-337 Ribosomal protein L3                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1vqnB01 B:1-38,B:207-257              1vqnB02 B:39-77,B:189-206,B:258-337    1vqnB03 B:78-188  [code=3.30.1430.10, no name defined]                                                         1vqnB02           1vqnB01 B:1-38,B:207-257                           1vqnB02 B:39-77,B:189-206,B:258-337 Translation factors                          CATH domains
               Pfam domains --------------------------------------------Ribosomal_L3-1vqnB01 B:45-312                                                                                                                                                                                                                                               ------------------------- Pfam domains
         Sec.struct. author ....................................ee..eeeeeeeeeeeeee...........eeeeeeeeee...eeeeeeeeeeee..eeeeeeeee......hhhhh.......hhhhhhhhhhhhhhhh.eeeeeeeee.hhhhh.........eeeeeee..hhhhhhhhhhhhhhhh.ee..........eeeeeee.....eehhhhhhh....hhhhhh.........................ee....eeeeeeeeeeeeeee................eeeeeee.........eeeeee.............eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L3            ------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn B    1 PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPNDQPRLDPEVRYVSNESNQG  337
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       

Chain C from PDB  Type:PROTEIN  Length:246
 aligned with RL4_HALMA | P12735 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:246
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240      
           RL4_HALMA      1 MQATIYDLDGNTDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKQDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAER  246
               SCOP domains d1vqnc1 C:1-246 Ribosomal protein L4                                                                                                                                                                                                                   SCOP domains
               CATH domains 1vqnC00 C:1-246  [code=3.40.1370.10, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------Ribosomal_L4-1vqnC01 C:16-246                                                                                                                                                                                                           Pfam domains
         Sec.struct. author .eeeee.....eeeeee.hhhhhh..hhhhhhhhhhhhhhhh.............................ee..ee.........................hhhhhhhhhhhhhhhh.hhhhhhhhh.........eee.hhhhhh.hhhhhhhhhhhh..hhhhhhhh..ee..hhhhhhh..ee.....eeee....hhhhhh....eeee....hhhhhhhhhh....eeeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------RIBOSOMAL_L1E              --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1vqn C    1 MQATIYDLDGNTDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAER  246
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240      

Chain D from PDB  Type:PROTEIN  Length:140
 aligned with RL5_HALMA | P14124 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:165
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
           RL5_HALMA     11 FHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV  175
               SCOP domains d1vqnd1 D:10-174 Rib     osomal protein L5                                                                                                                            SCOP domains
               CATH domains 1vqnD00 D:10-174  [c     ode=3.30.1440.10, no name defined]                                                                                                           CATH domains
               Pfam domains -Ribosomal_L5-1vqnD0     1 D:11-64                     ---Ribosomal_L5_C-1vqnD02 D:68-166                                                                    -------- Pfam domains
         Sec.struct. author .......eeeeeeeeee...-----..hhhhhhhhh....eee.................eeeeee.hhhhhhhhh.hhhhh............eee.--------------------.eeeeeee...hhhhh..............hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------RIBOSOMAL_L5     --------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn D   10 FHEMREPRIEKVVVHMGIGH-----ANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFG--------------------LDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV  174
                                    19        29     |  39        49        59        69        79        89        99       | -         -       129       139       149       159       169     
                                              29    35                                                                     107                  128                                              

Chain E from PDB  Type:PROTEIN  Length:172
 aligned with RL6_HALMA | P14135 from UniProtKB/Swiss-Prot  Length:178

    Alignment length:172
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171  
           RL6_HALMA      2 PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP  173
               SCOP domains d1vqne1 E:1-79 Ribosomal protein L6                                            d1vqne2 E:80-172 Ribosomal protein L6                                                         SCOP domains
               CATH domains 1vqnE01 E:1-79  [code=3.90.930.12, no name defined]                            1vqnE02 E:80-172  [code=3.90.930.12, no name defined]                                         CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------Ribosomal_L6-1vqnE01 E:91-165                                              ------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------Ribosomal_L6-1vqnE02 E:91-165                                              ------- Pfam domains (2)
         Sec.struct. author .eeeee.....eeeee..eeeeee..eeeeee.....eeeeee..eeeeee...hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......eeeee..eeeeehhhhh...eeee.....eeeee..eeeeee.hhhhhhhhhhhhhhh.............eeeeee.. Sec.struct. author
                 SAPs(SNPs) -S--------------------S----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L6_2        - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn E    1 PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP  172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  

Chain F from PDB  Type:PROTEIN  Length:119
 aligned with RL7A_HALMA | P12743 from UniProtKB/Swiss-Prot  Length:120

    Alignment length:119
                                    11        21        31        41        51        61        71        81        91       101       111         
          RL7A_HALMA      2 PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEADADVEDIADKVEELR  120
               SCOP domains d1vqnf1 F:1-119 Ribosomal protein L7ae                                                                                  SCOP domains
               CATH domains 1vqnF00 F:1-119  [code=3.30.1330.30, no name defined]                                                                   CATH domains
               Pfam domains -------------Ribosomal_L7Ae-1vqnF01 F:14-108                                                                ----------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhh.eeeehhhhhhhhhhhh....eeee....hhhhh.hhhhhhhh....eeee.hhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------RIBOSOMAL_L7AE    ----------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn F    1 PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEADADVEDIADKVEELR  119
                                    10        20        30        40        50        60        70        80        90       100       110         

Chain G from PDB  Type:PROTEIN  Length:29
 aligned with RL10_HALMA | P15825 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:62
                                    21        31        41        51        61        71  
          RL10_HALMA     12 IPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDD   73
               SCOP domains d1vqng1 G:12-73                                                SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.---------------------------------hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                1vqn G   12 IPEWKQEEVDAIVEMIES---------------------------------RNTLLERALDD   73
                                    21       | -         -         -         - |      71  
                                            29                                63          

Chain H from PDB  Type:PROTEIN  Length:160
 aligned with RL10E_HALMA | P60617 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:171
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173 
         RL10E_HALMA      4 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL  174
               SCOP domains d1vqnh1 H:1-163 Ribosomal protein L10e                                                                                                                             -------- SCOP domains
               CATH domains 1vqnH00 H:1-171  [code=3.90.1170.10, no name defined]                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.........................eee....hhhhh.eeeeeee...eeeehhhhhhhhhhhhhhhhhhhh.....eeee.....eeeee..-----------........eeeeeeeee....eeeeeee...hhhhhhhhhhhhhhhh...eeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------RIBOSOMAL_L10E        -------------------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn H    1 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENK-----------DGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPAGNA  171
                                    10        20        30        40        50        60        70        80        90        |-         -|      120       130       140       150       160       170 
                                                                                                                             99         111                                                            

Chain I from PDB  Type:PROTEIN  Length:70
 aligned with RL11_HALMA | P14122 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:70
                                    76        86        96       106       116       126       136
          RL11_HALMA     67 GVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE  136
               SCOP domains d1vqni1 I:71-140 Ribosomal protein L11, C-terminal domain              SCOP domains
               CATH domains 1vqnI00 I:71-140  [code=1.10.10.250, no name defined]                  CATH domains
               Pfam domains Ribosomal_L11-1vqnI01 I:71-139                                       - Pfam domains
         Sec.struct. author ...hhhhhhhhhh..............eeeehhhhhhhhhhh.......hhhhhhhhhh.......eeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------RIBOSOMAL_L11   PROSITE (4)
                 Transcript ---------------------------------------------------------------------- Transcript
                1vqn I   71 GVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE  140
                                    80        90       100       110       120       130       140

Chain J from PDB  Type:PROTEIN  Length:142
 aligned with RL13_HALMA | P29198 from UniProtKB/Swiss-Prot  Length:145

    Alignment length:142
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143  
          RL13_HALMA      4 AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW  145
               SCOP domains d1vqnj1 J:4-145 Ribosomal protein L13                                                                                                          SCOP domains
               CATH domains 1vqnJ00 J:4-145  [code=3.90.1180.10, no name defined]                                                                                          CATH domains
               Pfam domains -----Ribosomal_L13-1vqnJ01 J:9-117                                                                                ---------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhhh...eeeehhhh.eee.hhhhhhhhhhhhhhh..........hhhhhhhhhhhh.....hhhhhhhhh.eee..................hhhhh..eeehhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------RIBOSOMAL_L13           --------------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn J    4 AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW  145
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143  

Chain K from PDB  Type:PROTEIN  Length:132
 aligned with RL14_HALMA | P22450 from UniProtKB/Swiss-Prot  Length:132

    Alignment length:132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
          RL14_HALMA      1 MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV  132
               SCOP domains d1vqnk1 K:1-132 Ribosomal protein L14                                                                                                SCOP domains
               CATH domains 1vqnK00 K:1-132 Ribosomal Protein L14;                                                                                               CATH domains
               Pfam domains ----------Ribosomal_L14-1vqnK01 K:11-132                                                                                             Pfam domains
         Sec.struct. author ......ee...ee...eeee.....eeeeeeeee...........ee....eeeeeeeee.......eeeeeeee....ee.....eeee...eeeee.............eeehhhhhhhhhhhh...eee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------RIBOSOMAL_L14  PDB: K:71-97----------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1vqn K    1 MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV  132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  

Chain L from PDB  Type:PROTEIN  Length:145
 aligned with RL15_HALMA | P12737 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
          RL15_HALMA      2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEERQ  151
               SCOP domains d1vqnl1 L:1-150 Ribosomal protein L15 (L15p)                                                                                                           SCOP domains
               CATH domains 1vqnL01 L:1-50                                    1vqnL02 L:51-149  [code=3.100.10.     10, no name defined]                                         - CATH domains
               Pfam domains ---------------Ribosomal_L18e-1vqnL01 L:16-143                                                                                                 ------- Pfam domains
         Sec.struct. author ..hhhhh...............hhhhhh.........................hhhhh...eeeehhhhhh............-----.eee.hhh.........eeee.........eeee.eehhhhhhhhhhh..eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------RIBOSOMAL_L15  PDB: L:107-137  ------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1vqn L    1 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAE-----FRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEERQ  150
                                    10        20        30        40        50        60        70        80  |     90       100       110       120       130       140       150
                                                                                                             83    89                                                             

Chain M from PDB  Type:PROTEIN  Length:194
 aligned with RL15E_HALMA | P60618 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:194
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    
         RL15E_HALMA      2 ARSAYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGKG  195
               SCOP domains d1vqnm1 M:1-194 Ribosomal protein L15e                                                                                                                                                             SCOP domains
               CATH domains 1vqnM00 M:1-194 Ribosomal protein l15e                                                                                                                                                             CATH domains
               Pfam domains --Ribosomal_L15e-1vqnM01 M:3-192                                                                                                                                                                -- Pfam domains
         Sec.struct. author ..hhhhhhhhhh....hhhhhhhhhhhhhhhh....eeee....hhhhhhhh.......eeeeeeeee.............hhhhhh........hhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeeee...hhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhh...............hhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------RIBOSOMAL_L15E          ---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn M    1 ARSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGKA  194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    

Chain N from PDB  Type:PROTEIN  Length:186
 aligned with RL18_HALMA | P14123 from UniProtKB/Swiss-Prot  Length:187

    Alignment length:186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181      
          RL18_HALMA      2 ATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGDIEL  187
               SCOP domains d1vqnn1 N:1-186 Ribosomal protein L18 (L18p)                                                                                                                                               SCOP domains
               CATH domains 1vqnN00 N:1-186  [code=3.30.420.100, no name defined]                                                                                                                                      CATH domains
               Pfam domains --------Ribosomal_L18p-1vqnN01 N:9-129                                                                                           --------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh...hhhhhhhhhh....eeeeee....eeeeeee......eeeeeee.hhhhhhh......hhhhhhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1vqn N    1 ATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGDIEL  186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      

Chain O from PDB  Type:PROTEIN  Length:115
 aligned with RL18E_HALMA | P12733 from UniProtKB/Swiss-Prot  Length:116

    Alignment length:115
                                    11        21        31        41        51        61        71        81        91       101       111     
         RL18E_HALMA      2 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLEQAIENNPEGSHVRVIR  116
               SCOP domains d1vqno1 O:1-115 Ribosomal protein L18e                                                                              SCOP domains
               CATH domains 1vqnO00 O:1-115  [code=3.100.10.10, no name defined]                                                                CATH domains
               Pfam domains ---------------------Ribosomal_L18e-1vqnO01 O:22-99                                                ---------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhheeeehhhhhhhh....eeeeeeeee.........eeeeeeehhhhhhhhhhhheeeehhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------RIBOSOMAL_L18E    ------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn O    1 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLEQAIENNPEGSHVRVIR  115
                                    10        20        30        40        50        60        70        80        90       100       110     

Chain P from PDB  Type:PROTEIN  Length:143
 aligned with RL19E_HALMA | P14119 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         RL19E_HALMA      2 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDA  144
               SCOP domains d1vqnp1 P:1-143 Ribosomal protein L19 (L19e)                                                                                                    SCOP domains
               CATH domains 1vqnP01 P:1-55  [code=1.10.1650.10, no name defined]   1vqnP02 P:56-88 Single Heli x bin1vqnP03 P:89-143  [code=1.10.1200.60, no name defined]  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..hhh.eee...hhhhhhhh.hhhhhhhhhhh..eee.......hhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----RIBOSOMAL_L19E      ---------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn P    1 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDA  143
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140   

Chain Q from PDB  Type:PROTEIN  Length:95
 aligned with RL21_HALMA | P12734 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:95
                                    11        21        31        41        51        61        71        81        91     
          RL21_HALMA      2 PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQE   96
               SCOP domains d1vqnq1 Q:1-95 Ribosomal proteins L21e                                                          SCOP domains
               CATH domains 1vqnQ00 Q:1-95 Myosin S1 fragment SH3-like barrel                                               CATH domains
               Pfam domains Ribosomal_L21e-1vqnQ01 Q:1-95                                                                   Pfam domains
         Sec.struct. author ................hhhhh....hhhhhh......eeee...........hhhhh..eeeeeeee..eeeeeeee..eeeeeeehhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------------------------RIBOSOMAL_L21E            ---------------------------------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                1vqn Q    1 PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQE   95
                                    10        20        30        40        50        60        70        80        90     

Chain R from PDB  Type:PROTEIN  Length:150
 aligned with RL22_HALMA | P10970 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
          RL22_HALMA      2 GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP  151
               SCOP domains d1vqnr1 R:1-150 Ribosomal protein L22                                                                                                                  SCOP domains
               CATH domains 1vqnR00 R:1-150 Ribosomal Protein L22; Chain A                                                                                                         CATH domains
               Pfam domains ---------------Ribosomal_L22-1vqnR01 R:16-149                                                                                                        - Pfam domains
         Sec.struct. author ........hhh.eeeeeeeee..hhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...................ee.hhhhhhhhhhhhhhhhhhhhhh..hhhhheeeeeeeeeeeee..eee.hhh.eee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_L22            --- PROSITE (5)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1vqn R    1 GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP  150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain S from PDB  Type:PROTEIN  Length:81
 aligned with RL23_HALMA | P12732 from UniProtKB/Swiss-Prot  Length:85

    Alignment length:81
                                    11        21        31        41        51        61        71        81 
          RL23_HALMA      2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASRI   82
               SCOP domains d1vqns1 S:1-81 Ribosomal protein L23                                              SCOP domains
               CATH domains 1vqnS00 S:1-81  [code=3.30.70.330, no name defined]                               CATH domains
               Pfam domains -Ribosomal_L23-1vqnS01 S:2-81                                                     Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhh..eeeeeeee.....eeeeeee....hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------RIBOSOMAL_L23   ---- PROSITE (5)
                 Transcript --------------------------------------------------------------------------------- Transcript
                1vqn S    1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASRI   81
                                    10        20        30        40        50        60        70        80 

Chain T from PDB  Type:PROTEIN  Length:119
 aligned with RL24_HALMA | P10972 from UniProtKB/Swiss-Prot  Length:120

    Alignment length:119
                                    11        21        31        41        51        61        71        81        91       101       111         
          RL24_HALMA      2 SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA  120
               SCOP domains d1vqnt1 T:1-119 Ribosomal proteins L24 (L24p)                                                                           SCOP domains
               CATH domains 1vqnT00 T:1-119  [code=2.30.30.30, no name defined]                                                                     CATH domains
               Pfam domains -------------------------------------------KOW-1vqnT01 T:44-75             -------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.hhhhhhhh.eeeehhhhhhhhh..eee.....eeee........eeeeeeee....eeee...eee.....eee...hhh.eeeee....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------RIBOSOMAL_L24     --------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn T    1 SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA  119
                                    10        20        30        40        50        60        70        80        90       100       110         

Chain U from PDB  Type:PROTEIN  Length:53
 aligned with RL24E_HALMA | P14116 from UniProtKB/Swiss-Prot  Length:67

    Alignment length:53
                                    14        24        34        44        54   
         RL24E_HALMA      5 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR   57
               SCOP domains d1vqnu1 U:4-56 Ribosomal protein L24e                 SCOP domains
               CATH domains 1vqnU00 U:4-56  [code=2.30.170.20, no name defined]   CATH domains
               Pfam domains Ribosomal_L24e-1vqnU01 U:4-56                         Pfam domains
         Sec.struct. author ...............eeee.....eeee.hhhhhhhhhh..hhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------- PROSITE (2)
                PROSITE (3) ----RIBOSOMAL_L24E    ------------------------------- PROSITE (3)
                 Transcript ----------------------------------------------------- Transcript
                1vqn U    4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR   56
                                    13        23        33        43        53   

Chain V from PDB  Type:PROTEIN  Length:65
 aligned with RL29_HALMA | P10971 from UniProtKB/Swiss-Prot  Length:71

    Alignment length:65
                                    11        21        31        41        51        61     
          RL29_HALMA      2 TVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGD   66
               SCOP domains d1vqnv1 V:1-65 Ribosomal protein L29 (L29p)                       SCOP domains
               CATH domains 1vqnV00 V:1-65  [code=1.10.287.310, no name defined]              CATH domains
               Pfam domains ----Ribosomal_L29-1vqnV01 V:5-63                               -- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -----------------------------------------RIBOSOMAL_L29  --------- PROSITE (5)
                 Transcript ----------------------------------------------------------------- Transcript
                1vqn V    1 TVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGD   65
                                    10        20        30        40        50        60     

Chain W from PDB  Type:PROTEIN  Length:154
 aligned with RL30_HALMA | P14121 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:154
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    
          RL30_HALMA      1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR  154
               SCOP domains d1vqnw1 W:1-154 Archaeal L30 (L30a)                                                                                                                        SCOP domains
               CATH domains 1vqnW01 W:1-57,W:114-154                                 1vqnW02 W:58-113  [code=1.10.15.30, no name defined]    1vqnW01 W:1-57,W:114-154                  CATH domains
               Pfam domains Ribosomal_L30-1vqnW01 W:1-52                        ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.......hhhhhhhhhhh......eeeee..hhhhhhhhhhh...eeee..hhhhhhhhhhhhh.........hhhhhhh.....hhhhhhhhhhh............eee.............hhhhh...ee.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------RIBOSOMAL_L30  PDB: W:20-52      ------------------------------------------------------------------------------------------------------ PROSITE (4)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn W    1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR  154
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150    

Chain X from PDB  Type:PROTEIN  Length:82
 aligned with RL31_HALMA | P18138 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:82
                                    17        27        37        47        57        67        77        87  
          RL31_HALMA      8 ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE   89
               SCOP domains d1vqnx1 X:7-88 Ribosomal protein L31e                                              SCOP domains
               CATH domains 1vqnX00 X:7-88  [code=3.10.440.10, no name defined]                                CATH domains
               Pfam domains Ribosomal_L31e-1vqnX01 X:7-87                                                    - Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeehhhhhhhhhh........eeeeeeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------------------------------RIBOSOMAL_L31E -------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------- Transcript
                1vqn X    7 ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE   88
                                    16        26        36        46        56        66        76        86  

Chain Y from PDB  Type:PROTEIN  Length:142
 aligned with RL32_HALMA | P12736 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:142
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235  
          RL32_HALMA     96 TELQARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLNPTYVEV  237
               SCOP domains d1vqny1 Y:95-236 Ribosomal protein L32e                                                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------------------------Ribosomal_L32e-1vqnY01 Y:124-231                                                                            ----- Pfam domains
         Sec.struct. author .eeee..........hhhhhhhhhhhhhhh.......hhhhh............................hhhhh.............eeeee.hhhhhh......eeeee....hhhhhhhhhhhhhhh........eeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ---------------------------------RIBOSOMAL_L32E       ---------------------------------------------------------------------------------------- PROSITE (6)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1vqn Y   95 TELQARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLNPTYVEV  236
                                   104       114       124       134       144       154       164       174       184       194       204       214       224       234  

Chain Z from PDB  Type:PROTEIN  Length:73
 aligned with RL37A_HALMA | P60619 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:73
                                    19        29        39        49        59        69        79   
         RL37A_HALMA     10 SSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRS   82
               SCOP domains d1vqnz1 Z:10-82 Ribosomal protein L37ae                                   SCOP domains
               CATH domains 1vqnZ00 Z:10-82  [code=2.20.25.30, no name defined]                       CATH domains
               Pfam domains -Ribosomal_L37ae-1vqnZ01 Z:11-82                                          Pfam domains
         Sec.struct. author hhhhhh...hhhhhhhhhhhhhhhh............eeeee..eeee....eeee.........hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                1vqn Z   10 RSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRS   82
                                    19        29        39        49        59        69        79   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (30, 31)

Asymmetric/Biological Unit
(-)
Fold: RL5-like (90)
(-)
Class: Peptides (792)

(-) CATH Domains  (32, 36)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (26, 28)

Asymmetric/Biological Unit
(-)
Clan: KOW (56)
(-)
Clan: OB (224)
(-)
Clan: RRM (206)
(-)
Clan: Ribo_L29 (45)
(-)
Clan: S11_L18p (67)
(-)
Clan: TRASH (61)

(-) Gene Ontology  (23, 232)

Asymmetric/Biological Unit(hide GO term definitions)
Chain 1   (RL37_HALMA | P32410)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain 2   (RL39_HALMA | P22452)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain 3   (RL44E_HALMA | P32411)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0070180    large ribosomal subunit rRNA binding    Interacting selectively and non-covalently with the large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain A   (RL2_HALMA | P20276)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0015934    large ribosomal subunit    The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain B   (RL3_HALMA | P20279)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain C   (RL4_HALMA | P12735)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain D   (RL5_HALMA | P14124)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain E   (RL6_HALMA | P14135)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain F   (RL7A_HALMA | P12743)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0004526    ribonuclease P activity    Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0090501    RNA phosphodiester bond hydrolysis    The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.
    GO:0090502    RNA phosphodiester bond hydrolysis, endonucleolytic    The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0001682    tRNA 5'-leader removal    Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by RNase P.
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain G   (RL10_HALMA | P15825)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0070180    large ribosomal subunit rRNA binding    Interacting selectively and non-covalently with the large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain H   (RL10E_HALMA | P60617)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain I   (RL11_HALMA | P14122)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0070180    large ribosomal subunit rRNA binding    Interacting selectively and non-covalently with the large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleopr