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Class: Low resolution protein structures (283)
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Fold: Ribosome and ribosomal fragments (154)
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Superfamily: Ribosome and ribosomal fragments (154)
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Family: Large subunit (36)
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Protein domain: 50S subunit (36)
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Deinococcus radiodurans [TaxId: 1299] (12)
1J5AK:; L:; M:STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
1JZXK:; L:; M:STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
1JZYK:; L:; M:STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
1JZZK:; L:; M:STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
1K01K:; L:; M:STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
1NJMK:; T:THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC (ASM) AND THE ANTIBIOTIC SPARSOMYCIN
1NJPK:; T:THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC (ASM)
1NKW1:; 2:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; 3:; Q:; R:; S:; T:; U:; W:; X:; Y:; Z:; 4:; A:; B:; C:; D:; E:; F:CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS
1NWX1:; 2:; 3:; 4:; A:; B:; C:; D:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; U:; W:; X:; Y:; Z:COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773
1NWY1:; 2:; 3:; 4:; A:; B:; C:; D:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; U:; W:; X:; Y:; Z:COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
1ONDQ:; Z:THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC
1SM11:; 2:; 3:; 4:; A:; B:; C:; D:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; U:; W:; X:; Y:; Z:COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
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Escherichia coli [TaxId: 562] (1)
487DH:; I:; J:; K:; L:; M:; N:SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION
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Haloarcula marismortui [TaxId: 2238] (20)
1C04A:; B:; C:; D:IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
1W2B1:; 2:; 5:; A:; B:; C:; D:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; R:; S:; T:; U:; V:; W:; X:; Y:; Z:TRIGGER FACTOR RIBOSOME BINDING DOMAIN IN COMPLEX WITH 50S
2QA41:1-56; 3:1-92; D:10-174; J:4-145; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88A MORE COMPLETE STRUCTURE OF THE THE L7/L12 STALK OF THE HALOARCULA MARISMORTUI 50S LARGE RIBOSOMAL SUBUNIT
2QEX1:1-56; 3:1-92; D:10-174; J:4-145; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88NEGAMYCIN BINDS TO THE WALL OF THE NASCENT CHAIN EXIT TUNNEL OF THE 50S RIBOSOMAL SUBUNIT
3CC21:1-56; 3:1-92; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88; D:10-174; G:12-73; J:4-145; K:1-132; L:1-150; M:1-193; N:1-186; O:1-115THE REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION WITH RRNA SEQUENCE FOR THE 23S RRNA AND GENOME-DERIVED SEQUENCES FOR R-PROTEINS
3CC41:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88CO-CRYSTAL STRUCTURE OF ANISOMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT
3CC71:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION C2487U
3CCE1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION U2535A
3CCJ1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION C2534U
3CCL1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION U2535C. DENSITY FOR ANISOMYCIN IS VISIBLE BUT NOT INCLUDED IN MODEL.
3CCM1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2611U
3CCQ1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION A2488U
3CCR1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION A2488C. DENSITY FOR ANISOMYCIN IS VISIBLE BUT NOT INCLUDED IN THE MODEL.
3CCS1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2482A
3CCU1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2482C
3CCV1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2616A
3CD61:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88CO-CYSTAL OF LARGE RIBOSOMAL SUBUNIT MUTANT G2616A WITH CC-PUROMYCIN
3CMA1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88THE STRUCTURE OF CCA AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
3CME1:1-56; 3:1-92; D:10-174; J:4-145; K:1-132; L:1-150; N:1-186; O:1-115; Q:1-95; T:1-119; U:4-56; V:1-65; W:1-154; X:7-88THE STRUCTURE OF CA AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
3CPW2:1-92; D:10-174; I:4-145; J:1-132; K:1-150; M:1-186; N:1-115; P:1-95; S:1-119; T:4-56; U:1-65; V:1-154; W:7-88; Z:1-56THE STRUCTURE OF THE ANTIBIOTIC LINEZOLID BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
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Family: Ribosome complexes (103)
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Protein domain: 70S ribosome functional complex (103)
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Escherichia coli [TaxId: 562] (72)
1EG0A:; B:; C:; D:; E:; F:; G:; H:; J:; K:; N:FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
1JQMA:; B:FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (EF-G) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G, GDP AND FUSIDIC ACID
1JQSA:; B:; C:FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G' AND V) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G AND GMPPCP, A NONHYDROLYSABLE GTP ANALOG
1JQTA:FITTING OF L11 PROTEIN IN THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
1LS2A:FITTING OF EF-TU AND TRNA IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
1MI6A:DOCKING OF THE MODIFIED RF2 X-RAY STRUCTURE INTO THE LOW RESOLUTION CRYO-EM MAP OF RF2 E.COLI 70S RIBOSOME
1MJ1A:; L:; O:; P:FITTING THE TERNARY COMPLEX OF EF-TU/TRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME
1ML5c:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; U:; V:; W:; X:; Z:STRUCTURE OF THE E. COLI RIBOSOMAL TERMINATION COMPLEX WITH RELEASE FACTOR 2
1PN6A:DOMAIN-WISE FITTING OF THE CRYSTAL STRUCTURE OF T.THERMOPHILUS EF-G INTO THE LOW RESOLUTION MAP OF THE RELEASE COMPLEX.PUROMYCIN.EFG.GDPNP OF E.COLI 70S RIBOSOME.
1PN7L:; O:COORDINATES OF S12, L11 PROTEINS AND P-TRNA, FROM THE 70S X-RAY STRUCTURE ALIGNED TO THE 70S CRYO-EM MAP OF E.COLI RIBOSOME
1PN8L:; O:COORDINATES OF S12, L11 PROTEINS AND E-SITE TRNA FROM 70S CRYSTAL STRUCTURE SEPARATELY FITTED INTO THE CRYO-EM MAP OF E.COLI 70S.EF-G.GDPNP COMPLEX. THE ATOMIC COORDINATES ORIGINALLY FROM THE E-SITE TRNA WERE FITTED IN THE POSITION OF THE HYBRID P/E-SITE TRNA.
1QZCL:COORDINATES OF S12, SH44, LH69 AND SRL SEPARATELY FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
1QZDA:EF-TU.KIRROMYCIN COORDINATES FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
1R2WA:COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME
1R2XA:COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
1T1MC:BINDING POSITION OF RIBOSOME RECYCLING FACTOR (RRF) ON THE E. COLI 70S RIBOSOME
2RDO1:3-52; P:1-11450S SUBUNIT WITH EF-G(GDPNP) AND RRF BOUND
3BBX1:3-52; P:1-114THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX
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Haloarcula marismortui [TaxId: 2238] (1)
3CC2C:1-246THE REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION WITH RRNA SEQUENCE FOR THE 23S RRNA AND GENOME-DERIVED SEQUENCES FOR R-PROTEINS
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Thermotoga maritima [TaxId: 2336] (2)
2JQ7A:8-140MODEL FOR THIOSTREPTON BINDING TO THE RIBOSOMAL L11-RNA
2K3FA:8-140RIBOSOMAL PROTEIN L11 FROM THERMOTOGA MARITIMA
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Thermus thermophilus [TaxId: 274] (20)
1IBKB:; C:; D:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; V:STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
1IBLB:; D:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; V:; C:STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
1IBMB:; C:; D:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; V:STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
1JGOE:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; U:; V:; W:; X:THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
1JGPE:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; U:; V:; W:; X:THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
1JGQE:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; U:; V:; W:; X:THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
1MVRL:; O:DECODING CENTER & PEPTIDYL TRANSFERASE CENTER FROM THE X-RAY STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME, ALIGNED TO THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
2OM7E:5-128STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS
2R1GH:5-128COORDINATES OF THE THERMUS THERMOPHILUS 30S COMPONENTS NEIGHBORING RBFA AS OBTAINED BY FITTING INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
2UXBL:5-128; O:2-89; P:1-83; S:2-81CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
2UXDL:5-128; O:2-89; P:1-83; S:2-81CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA CGGG IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
2VQEL:5-128; O:2-89; P:1-83; S:2-81MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
2VQFL:5-128; O:2-89; P:1-83; S:2-81MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
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Family: Small subunit (15)
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Protein domain: 30S subunit (13)
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Thermus thermophilus [TaxId: 274] (13)
1DV4E:; G:PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
1EMIA:STRUCTURE OF 16S RRNA IN THE REGION AROUND RIBOSOMAL PROTEIN S8.
1FKAB:; E:; F:; G:; H:; I:; J:; K:; L:; M:; N:; O:; P:; Q:; R:; S:; T:; C:; D:STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
1QD7C:; D:; E:; F:; G:; H:; I:; J:PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
2UXBE:5-154CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
2UXDE:5-154CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA CGGG IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
2VQEE:5-154MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
2VQFE:5-154MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
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Protein domain: 40S subunit (2)