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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF A2AAR-BRIL IN COMPLEX WITH ZM241385 AT 1.8A RESOLUTION
 
Authors :  W. Liu, E. Chun, A. A. Thompson, P. Chubukov, F. Xu, V. Katritch, G. W. Han L. H. Heitman, A. P. Ijzerman, V. Cherezov, R. C. Stevens, Gpcr Networ
Date :  06 Apr 12  (Deposition) - 25 Jul 12  (Release) - 01 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Novel Protein Engineering, Gpcr Network, Psi-Biology, Structural Genomics, Membrane Protein, Gpcr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Liu, E. Chun, A. A. Thompson, P. Chubukov, F. Xu, V. Katritch, G. W. Han, C. B. Roth, L. H. Heitman, A. P. Ijzerman, V. Cherezov, R. C. Stevens
Structural Basis For Allosteric Regulation Of Gpcrs By Sodium Ions.
Science V. 337 232 2012
PubMed-ID: 22798613  |  Reference-DOI: 10.1126/SCIENCE.1219218

(-) Compounds

Molecule 1 - ADENOSINE RECEPTOR A2A/SOLUBLE CYTOCHROME B562 CHIMERA
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: AA2AR_HUMAN, ADORA2, ADORA2A, CYBC
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS, ESCHERICHIA COLI
    Organism Taxid: 9606, 562
    Synonym: CYTOCHROME B-562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 30)

Asymmetric/Biological Unit (7, 30)
No.NameCountTypeFull Name
1CLR3Ligand/IonCHOLESTEROL
2NA1Ligand/IonSODIUM ION
3OLA16Ligand/IonOLEIC ACID
4OLB1Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
5OLC6Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
6PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
7ZMA1Ligand/Ion4-{2-[(7-AMINO-2-FURAN-2-YL[1,2,4]TRIAZOLO[1,5-A][1,3,5]TRIAZIN-5-YL)AMINO]ETHYL}PHENOL

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:85 , PHE A:168 , GLU A:169 , MET A:177 , TRP A:246 , LEU A:249 , HIS A:250 , ASN A:253 , MET A:270 , HOH A:2521 , HOH A:2524 , HOH A:2585 , HOH A:2668BINDING SITE FOR RESIDUE ZMA A 2401
02AC2SOFTWAREASP A:52 , SER A:91 , HOH A:2529 , HOH A:2552 , HOH A:2579BINDING SITE FOR RESIDUE NA A 2402
03AC3SOFTWAREALA A:72 , ALA A:73 , GLY A:76 , ILE A:80 , CLR A:2405 , OLC A:2424 , OLC A:2427BINDING SITE FOR RESIDUE CLR A 2403
04AC4SOFTWARELEU A:247 , PRO A:248 , CYS A:262 , SER A:263 , OLA A:2409BINDING SITE FOR RESIDUE CLR A 2404
05AC5SOFTWARELEU A:187 , CYS A:254 , PHE A:255 , PHE A:258 , CLR A:2403 , OLA A:2409 , OLC A:2424 , OLC A:2427 , HOH A:2603BINDING SITE FOR RESIDUE CLR A 2405
06AC6SOFTWARETHR A:65 , THR A:68 , OLA A:2408 , OLC A:2424 , HOH A:2657BINDING SITE FOR RESIDUE OLA A 2406
07AC7SOFTWAREHIS A:264BINDING SITE FOR RESIDUE OLA A 2407
08AC8SOFTWAREILE A:10 , OLA A:2406 , OLA A:2420BINDING SITE FOR RESIDUE OLA A 2408
09AC9SOFTWAREPHE A:255 , CYS A:262 , CLR A:2404 , CLR A:2405 , OLC A:2424BINDING SITE FOR RESIDUE OLA A 2409
10BC1SOFTWAREILE A:3 , SER A:7 , THR A:11 , HOH A:2667BINDING SITE FOR RESIDUE OLA A 2410
11BC2SOFTWAREPHE A:44 , ALA A:97 , HOH A:2671BINDING SITE FOR RESIDUE OLA A 2411
12BC3SOFTWAREHOH A:2611BINDING SITE FOR RESIDUE OLA A 2412
13BC4SOFTWARELEU A:198 , ARG A:199 , LEU A:202BINDING SITE FOR RESIDUE OLA A 2413
14BC5SOFTWARELEU A:19 , LEU A:22 , TRP A:29 , VAL A:307BINDING SITE FOR RESIDUE OLA A 2415
15BC6SOFTWAREGLY A:5 , SER A:6 , TYR A:271 , VAL A:275 , HOH A:2504BINDING SITE FOR RESIDUE OLA A 2416
16BC7SOFTWARELEU A:192BINDING SITE FOR RESIDUE OLA A 2417
17BC8SOFTWAREPHE A:133 , MET A:140 , OLC A:2425BINDING SITE FOR RESIDUE OLA A 2418
18BC9SOFTWARETYR A:290 , ARG A:291BINDING SITE FOR RESIDUE OLA A 2419
19CC1SOFTWAREOLA A:2408 , HOH A:2605BINDING SITE FOR RESIDUE OLA A 2420
20CC2SOFTWARETRP A:32 , VAL A:229 , LYS A:233 , HOH A:2673BINDING SITE FOR RESIDUE OLA A 2421
21CC3SOFTWARETYR A:179 , PHE A:258 , OLC A:2423 , OLC A:2425 , OLC A:2427 , HOH A:2600BINDING SITE FOR RESIDUE OLC A 2422
22CC4SOFTWAREOLC A:2422 , OLC A:2427BINDING SITE FOR RESIDUE OLC A 2423
23CC5SOFTWAREPRO A:61 , THR A:65 , PHE A:70 , CLR A:2403 , CLR A:2405 , OLA A:2406 , OLA A:2409 , HOH A:2657 , HOH A:2674BINDING SITE FOR RESIDUE OLC A 2424
24CC6SOFTWAREMET A:140 , LEU A:141 , TYR A:179 , ALA A:184 , OLA A:2418 , OLC A:2422BINDING SITE FOR RESIDUE OLC A 2425
25CC7SOFTWARECYS A:28 , VAL A:31 , TRP A:32 , ARG A:205BINDING SITE FOR RESIDUE OLB A 2426
26CC8SOFTWAREPHE A:258 , CLR A:2403 , CLR A:2405 , OLC A:2422 , OLC A:2423BINDING SITE FOR RESIDUE OLC A 2427
27CC9SOFTWARETYR A:43 , VAL A:46 , PHE A:83 , TRP A:129BINDING SITE FOR RESIDUE OLC A 2428
28DC1SOFTWAREARG A:120BINDING SITE FOR RESIDUE PEG A 2430

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:71 -A:159
2A:74 -A:146
3A:77 -A:166
4A:259 -A:262

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EIY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EIY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EIY)

(-) Exons   (0, 0)

(no "Exon" information available for 4EIY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:390
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh.....eee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4eiy A   -1 GAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHV  307
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208|     1010      1020      1030      1040 ||   1065      1075      1085      1095      1105||     227       237       247       257       267       277       287       297       307
                                                                                                                                                                                                                                           208|                                     1042|                                            1106|                                                                                        
                                                                                                                                                                                                                                           1001                                      1058                                              219
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EIY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EIY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EIY)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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  4eiy
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  AA2AR_HUMAN | P29274
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  C562_ECOLX | P0ABE7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AA2AR_HUMAN | P29274: 1mmh 1upe 2ydo 2ydv 3eml 3pwh 3qak 3rey 3rfm 3uza 3uzc 3vg9 3vga 4ug2 4uhr 5g53 5iu4 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5uig 5uvi
        C562_ECOLX | P0ABE7: 1apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3foo 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4iaq 4iar 4ib4 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4qin 4rwa 4rwd 4u9d 4u9e 4yay 4z34 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu4 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5ndz 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi

(-) Related Entries Specified in the PDB File

3eml CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF A2AAR-T4L IN COMPLEX WITH ZM241385 RELATED ID: GPCR-6 RELATED DB: TARGETTRACK