3EML - JenaLib

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:168 , GLU A:169 , MET A:177 , TRP A:246 , LEU A:249 , HIS A:250 , ASN A:253 , HIS A:264 , MET A:270 , HOH A:519 , HOH A:559	BINDING SITE FOR RESIDUE ZMA A 401
02	AC2	SOFTWARE	VAL A:57 , LEU A:58 , STE A:405 , HOH A:570	BINDING SITE FOR RESIDUE STE A 402
03	AC3	SOFTWARE	VAL A:46	BINDING SITE FOR RESIDUE STE A 403
04	AC4	SOFTWARE	VAL A:57 , PHE A:62 , STE A:405	BINDING SITE FOR RESIDUE STE A 404
05	AC5	SOFTWARE	GLY A:76 , ILE A:80 , STE A:402 , STE A:404	BINDING SITE FOR RESIDUE STE A 405
06	AC6	SOFTWARE	GLY A:23 , PHE A:299 , HOH A:562	BINDING SITE FOR RESIDUE STE A 406
07	AC7	SOFTWARE	ARG A:222 , HOH A:506 , ASN A:1040 , THR A:1157 , TRP A:1158	BINDING SITE FOR RESIDUE SO4 A 407
08	AC8	SOFTWARE	ARG A:296 , GLN A:297 , ARG A:300	BINDING SITE FOR RESIDUE SO4 A 408
09	AC9	SOFTWARE	ARG A:107 , ALA A:203 , ARG A:206 , HOH A:530 , ARG A:1008	BINDING SITE FOR RESIDUE SO4 A 409
10	BC1	SOFTWARE	ALA A:73 , CYS A:74 , HIS A:75	BINDING SITE FOR RESIDUE SO4 A 410
11	BC2	SOFTWARE	THR A:1142 , PRO A:1143 , ASN A:1144 , ARG A:1145	BINDING SITE FOR RESIDUE SO4 A 411
12	BC3	SOFTWARE	PHE A:1114 , THR A:1115 , ASN A:1116 , SER A:1117 , ASN A:1132	BINDING SITE FOR RESIDUE SO4 A 412
13	BC4	SOFTWARE	HOH A:547 , ARG A:1076 , ARG A:1080	BINDING SITE FOR RESIDUE SO4 A 413

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:448
 aligned with ENLYS_BPT4 | P00720 from UniProtKB/Swiss-Prot  Length:164

    Alignment length:448
                                                                                                                                                                                                 2                                                                                                                                                                                                            164                                                                           
                                                                                                                                                                                                1|                                  3                                                                                                                                                           161         162 |                                                                           
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -    ||   -         -         -         -|       12        22        32        42        52        62        72        82        92       102       112       122       132       142       152        |-         -| |      -         -         -         -         -         -         -        
          ENLYS_BPT4      - --------------------------------------------------------------------------------------------------------------------------------------------------------------------MN----------------------------------IFEMLRIDERLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSIWYNQTPNRAKRVITTFRTGTWDAY-----------KNL---------------------------------------------------------------------------    -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3emlA01 A:3-1002,A:223-310 Rhopdopsin 7-helix transmembrane proteins                                                                                                                                    3emlA02 A:1003-222  [code=1.10.530.40, no name defined]                                                                                                         3emlA01 A:3-1002,A:223-310 Rhopdopsin 7-helix transmembrane proteins                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh..eeeeee.....eeee..eeee...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3eml A    3 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ  310
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142     ||159       169       179       189       199      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152       222       232       242       252       262       272       282       292       302        
                                                                                                                                                                           148|                                                 208|                                                                                                                                                           1161|                                                                                        
                                                                                                                                                                            156                                                 1002                                                                                                                                                             222

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 2)

Pfam Domains (0, 0)

Gene Ontology (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ENLYS_BPT4 | P00720)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0003796	lysozyme activity	Catalysis of the hydrolysis of the beta-(1->4) linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan.
biological process
	GO:0016998	cell wall macromolecule catabolic process	The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
	GO:0019835	cytolysis	The rupture of cell membranes and the loss of cytoplasm.
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0009253	peptidoglycan catabolic process	The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.
	GO:0019076	viral release from host cell	The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 13)

Sites (13, 13)