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(-) Description

Title :  CRYSTAL STRUCTURE OF A THERMOSTABILISED HUMAN PROTEASE-ACTIVATED RECEPTOR-2 (PAR2) IN COMPLEX WITH AZ3451 AT 3.6 ANGSTROM RESOLUTION
 
Authors :  R. K. Y. Cheng, C. Fiez-Vandal, O. Schlenker, K. Edman, B. Aggeler, D. G. G. Brown, R. M. Cooke, C. E. Dumelin, A. S. Dore, S. Geschwindner, C. Gre O. Hermansson, A. Jazayeri, P. Johansson, L. Leong, R. Prihandoko, M. H. Soutter, A. Snijder, L. Sundstrom, B. Tehan, P. Thornton, D. Troast G. Wiggin, A. Zhukov, F. H. Marshall, N. Dekker
Date :  09 Mar 17  (Deposition) - 03 May 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Protein, Gpcr, 7Tm (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. K. Y. Cheng, C. Fiez-Vandal, O. Schlenker, K. Edman, B. Aggeler, D. G. Brown, G. A. Brown, R. M. Cooke, C. E. Dumelin, A. S. Dore, S. Geschwindner, C. Grebner, N. O. Hermansson, A. Jazayeri, P. Johansson, L. Leong, R. Prihandoko, M. Rappas, H. Soutter, A. Snijder, L. Sundstrom, B. Tehan, P. Thornton, D. Troast, G. Wiggin, A. Zhukov, F. H. Marshall, N. Dekker
Structural Insight Into Allosteric Modulation Of Protease-Activated Receptor 2.
Nature V. 545 112 2017
PubMed-ID: 28445455  |  Reference-DOI: 10.1038/NATURE22309

(-) Compounds

Molecule 1 - LYSOZYME,PROTEINASE-ACTIVATED RECEPTOR 2,SOLUBLE CYTOCHROME B562,PROTEINASE-ACTIVATED RECEPTOR 2
    Chains: A
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC
    Expression System Taxid: 7108
    Expression System Variant: SF9
    Gene: E, T4TP126, F2RL1, GPR11, PAR2, CYBC
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: ENTEROBACTERIA PHAGE T4, HOMO SAPIENS, ESCHERICHIA COLI
    Organism Taxid: 10665, 9606, 562
    Synonym: PAR-2,COAGULATION FACTOR II RECEPTOR-LIKE 1,G-PROTEIN COUPLED RECEPTOR 11,THROMBIN RECEPTOR-LIKE 1,CYTOCHROME B-562,PAR-2, COAGULATION FACTOR II RECEPTOR-LIKE 1,G-PROTEIN COUPLED RECEPTOR 11, THROMBIN RECEPTOR-LIKE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
18UN1Ligand/Ion2-(6-BROMANYL-1,3-BENZODIOXOL-5-YL)-~{N}-(4-CYANOPHENYL)-1-[(1~{S})-1-CYCLOHEXYLETHYL]BENZIMIDAZOLE-5-CARBOXAMIDE
2NA1Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:76 , ALA A:120 , LEU A:123 , PHE A:154 , ALA A:157 , ASN A:158 , CYS A:161 , TRP A:199 , LEU A:203 , TYR A:210 , VAL A:211binding site for residue 8UN A 2201
2AC2SOFTWAREASP A:121 , ASN A:158 , SER A:162 , ASN A:336 , ASP A:340binding site for residue NA A 2202

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:148 -A:226

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5NDZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NDZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NDZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5NDZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:556
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.eeeee...eee..ee....hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...eee......eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ndz A 1001 SNIFEMLRIDEGLRLKIYKDYTIGIGHLLTKAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYIYEFFSVDEFSASVLTGKLTTVFLPIVYTIVFVVALPSNGMALWVFLFRTKKKAPAVIYMANLALADLLSVIWFPLKIAYHIHGNNWIYGEALCNVLIGFFYANMYCSILFLTCLSVQRAWEIVNPMGHSRKKANIAIGISLAIWLLILLVTIPLYVVKQTIFIPALQITTCHDVLPEQLLVGDMFNYFLSLAIGVFLFPAFLTASAYVLMIRALADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLENSEKKRKRAIKLAVTVAAMYLICFTPSNLLLVVHYFLIKSQGQSHVYALYIVALCLSTLNSCIDPFVYYFVSHDFRDHAKNAL  359
                                  1010      1020|     1034||    1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160    ||  63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263     |2003      2013      2023      2033      2043      2053      2063      2073      2083      2093      2103 ||    283       293       303       313       323       333       343       353      
                                            1020|      1035|                                                                                                                       1165|                                                                                                                                                                                                               269|                                                                                                     2105|                                                                                   
                                             1025       1042                                                                                                                          59                                                                                                                                                                                                               2000                                                                                                       276
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NDZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NDZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NDZ)

(-) Gene Ontology  (82, 82)

Asymmetric/Biological Unit(hide GO term definitions)

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  5ndz
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  C562_ECOLX | P0ABE7
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  3.2.1.17
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C562_ECOLX | P0ABE7: 1apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3foo 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4eiy 4iaq 4iar 4ib4 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4qin 4rwa 4rwd 4u9d 4u9e 4yay 4z34 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu4 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi
        D9IEF7_BPT4 | D9IEF7: 4s0w 5ndd 5t1a 5v83 5v86 5v88 5vba 5xez 5xf1
        PAR2_HUMAN | P55085: 5ndd 5nj6
UniProtKB/TrEMBL
        D9IEF7_BPT4 | D9IEF7: 4pjz 4pk0 4pla 4qkx 4u15 4u16 4uis 4xsj 4yc4 5bz6 5i0n

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5NDZ)