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(-) Description

Title :  CRYSTAL STRUCTURE OF STABILIZED A2A ADENOSINE RECEPTOR A2AR-STAR2-BRIL IN COMPLEX WITH ZM241385 AT 1.7A RESOLUTION
 
Authors :  E. Segala, D. Guo, R. K. Y. Cheng, A. Bortolato, F. Deflorian, A. S. Dore, J. C. Errey, L. H. Heitman, A. P. Ijzerman, F. H. Marshall, R. M. Cooke
Date :  17 Mar 16  (Deposition) - 29 Jun 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym./Biol. Unit :  A
Keywords :  G-Protein-Coupled Receptor, Integral Membrane Protein, Chimera, Thermostabilizing Mutations, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Segala, D. Guo, R. K. Cheng, A. Bortolato, F. Deflorian, A. S. Dore, J. C. Errey, L. H. Heitman, A. P. Ijzerman, F. H. Marshall, R. M. Cooke
Controlling The Dissociation Of Ligands From The Adenosine A2A Receptor Through Modulation Of Salt Bridge Strength.
J. Med. Chem. V. 59 6470 2016
PubMed-ID: 27312113  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00653

(-) Compounds

Molecule 1 - ADENOSINE RECEPTOR A2A,SOLUBLE CYTOCHROME B562,ADENOSINE RECEPTOR A2A
    ChainsA
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System CommonCABBAGE LOOPER
    Expression System PlasmidPFAST-BAC
    Expression System StrainTNI PRO
    Expression System Taxid7111
    GeneADORA2A, ADORA2, CYBC
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS, ESCHERICHIA COLI
    Organism Taxid9606, 562
    SynonymCYTOCHROME B-562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 31)

Asymmetric/Biological Unit (6, 31)
No.NameCountTypeFull Name
1CLR4Ligand/IonCHOLESTEROL
2NA1Ligand/IonSODIUM ION
3OLA20Ligand/IonOLEIC ACID
4OLB3Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
5OLC2Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
6ZMA1Ligand/Ion4-{2-[(7-AMINO-2-FURAN-2-YL[1,2,4]TRIAZOLO[1,5-A][1,3,5]TRIAZIN-5-YL)AMINO]ETHYL}PHENOL

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:52 , SER A:91 , HOH A:2546 , HOH A:2555 , HOH A:2612binding site for residue NA A 2400
02AC2SOFTWARELEU A:85 , PHE A:168 , GLU A:169 , MET A:177 , TRP A:246 , LEU A:249 , HIS A:250 , ASN A:253 , MET A:270 , ILE A:274 , HOH A:2543 , HOH A:2598 , HOH A:2608 , HOH A:2611binding site for residue ZMA A 2401
03AC3SOFTWAREHIS A:75 , GLY A:76 , PHE A:79 , PHE A:133 , MET A:140 , CLR A:2403 , OLA A:2421 , OLA A:2422 , OLB A:2426binding site for residue CLR A 2402
04AC4SOFTWAREALA A:72 , ALA A:73 , GLY A:76 , ILE A:80 , CLR A:2402 , CLR A:2405 , OLB A:2427 , OLC A:2429 , HOH A:2526binding site for residue CLR A 2403
05AC5SOFTWARELEU A:247 , PRO A:248 , CYS A:262 , SER A:263 , OLA A:2412 , HOH A:2502 , HOH A:2614binding site for residue CLR A 2404
06AC6SOFTWARECYS A:254 , PHE A:255 , PHE A:258 , CLR A:2403 , OLA A:2418 , OLB A:2427 , OLC A:2429 , HOH A:2589binding site for residue CLR A 2405
07AC7SOFTWARETHR A:65 , OLA A:2423 , OLC A:2429binding site for residue OLA A 2406
08AC8SOFTWAREPRO A:266binding site for residue OLA A 2407
09AC9SOFTWARELEU A:244binding site for residue OLA A 2408
10AD1SOFTWAREPHE A:44 , ALA A:97 , VAL A:116 , HOH A:2583binding site for residue OLA A 2409
11AD2SOFTWAREGLY A:5 , LEU A:267 , TYR A:271 , VAL A:275 , HOH A:2637binding site for residue OLA A 2410
12AD3SOFTWARELEU A:96 , ILE A:127 , LEU A:131 , CYS A:185 , PRO A:189 , OLA A:2415 , OLA A:2420binding site for residue OLA A 2411
13AD4SOFTWARECLR A:2404binding site for residue OLA A 2412
14AD5SOFTWARELEU A:19 , LEU A:26 , TRP A:29 , PHE A:286binding site for residue OLA A 2413
15AD6SOFTWAREGLY A:123 , VAL A:130 , OLA A:2411binding site for residue OLA A 2415
16AD7SOFTWAREOLA A:2425binding site for residue OLA A 2416
17AD8SOFTWARETRP A:32 , LYS A:233 , OLB A:2428binding site for residue OLA A 2417
18AD9SOFTWARELEU A:187 , LEU A:194 , ALA A:236 , ALA A:243 , CLR A:2405binding site for residue OLA A 2418
19AE1SOFTWAREMET A:140 , LEU A:141 , TYR A:179 , ALA A:184 , OLA A:2411 , OLA A:2421 , OLB A:2426 , HOH A:2508 , HOH A:2515binding site for residue OLA A 2420
20AE2SOFTWAREMET A:140 , CLR A:2402 , OLA A:2420 , OLA A:2422 , HOH A:2503binding site for residue OLA A 2421
21AE3SOFTWARECLR A:2402 , OLA A:2421 , OLC A:2430binding site for residue OLA A 2422
22AE4SOFTWAREPHE A:255 , CYS A:262 , OLA A:2406 , OLC A:2429 , HOH A:2502 , HOH A:2588binding site for residue OLA A 2423
23AE5SOFTWARESER A:6 , HOH A:2513binding site for residue OLA A 2424
24AE6SOFTWARETHR A:279 , OLA A:2416binding site for residue OLA A 2425
25AE7SOFTWARETYR A:179 , PHE A:258 , CLR A:2402 , OLA A:2420 , OLB A:2427 , HOH A:2564binding site for residue OLB A 2426
26AE8SOFTWAREPHE A:183 , PHE A:258 , CLR A:2403 , CLR A:2405 , OLB A:2426 , HOH A:2505 , HOH A:2526 , HOH A:2589 , HOH A:2624binding site for residue OLB A 2427
27AE9SOFTWARECYS A:28 , TYR A:43 , LEU A:54 , ARG A:205 , OLA A:2417binding site for residue OLB A 2428
28AF1SOFTWARELEU A:58 , PHE A:62 , THR A:65 , PHE A:70 , CYS A:71 , CLR A:2403 , CLR A:2405 , OLA A:2406 , OLA A:2423 , HOH A:2617binding site for residue OLC A 2429
29AF2SOFTWARETYR A:43 , LEU A:54 , GLY A:118 , ILE A:125 , TRP A:129 , PHE A:133 , OLA A:2422binding site for residue OLC A 2430

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:71 -A:159
2A:74 -A:146
3A:77 -A:166
4A:259 -A:262

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IU4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IU4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IU4)

(-) Exons   (0, 0)

(no "Exon" information available for 5IU4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh.....eee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5iu4 A   -1 GAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKIIRS  305
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208|     1010      1020      1030      1040 ||   1065      1075      1085      1095      1105||     227       237       247       257       267       277       287       297        
                                                                                                                                                                                                                                           208|                                     1042|                                            1106|                                                                                      
                                                                                                                                                                                                                                           1001                                      1058                                              219                                                                                      

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IU4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IU4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IU4)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AA2AR_HUMAN | P292741mmh 1upe 2ydo 2ydv 3eml 3pwh 3qak 3rey 3rfm 3uza 3uzc 3vg9 3vga 4eiy 4ug2 4uhr 5g53 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5uig 5uvi
        C562_ECOLX | P0ABE71apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3foo 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4eiy 4iaq 4iar 4ib4 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4qin 4rwa 4rwd 4u9d 4u9e 4yay 4z34 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5ndz 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5IU4)