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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN LYSOPHOSPHATIDIC ACID RECEPTOR 1 IN COMPLEX WITH ONO9780307
 
Authors :  J. E. Chrencik, C. B. Roth, M. Terakado, H. Kurata, R. Omi, Y. Kihara, D. Warshaviak, S. Nakade, G. Asmar-Rovira, M. Mileni, H. Mizuno, M. T. C. Rodgers, G. W. Han, J. Velasquez, J. Chun, R. C. Stevens, M. A. Hanson Network (Gpcr)
Date :  30 Mar 15  (Deposition) - 03 Jun 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Human Lysophosphatidic Acid Receptor 1 (Lpa1), G-Protein Coupled Receptor (Gpcr), Membrane Protein, Antagonist, Endogenous Ligand, Psi-Biology, Structural Genomics, Gpcr Network, Lipidic Cubic Phase (Lcp), Compound Design, Polypharmacology, Lipid Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. E. Chrencik, C. B. Roth, M. Terakado, H. Kurata, R. Omi, Y. Kihara, D. Warshaviak, S. Nakade, G. Asmar-Rovira, M. Mileni, H. Mizuno, M. T. Griffith, C. Rodgers, G. W. Han, J. Velasquez, J. Chun, R. C. Stevens, M. A. Hanson
Crystal Structure Of Antagonist Bound Human Lysophosphatidi Acid Receptor 1.
Cell V. 161 1633 2015
PubMed-ID: 26091040  |  Reference-DOI: 10.1016/J.CELL.2015.06.002

(-) Compounds

Molecule 1 - LYSOPHOSPHATIDIC ACID RECEPTOR 1, SOLUBLE CYTOCHROME B562
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Atcc Number: CRL-1711
    Expression System Cell Line: SF9
    Expression System Plasmid: PFASTBAC
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-232
    Gene: LPAR1, EDG2, LPA1, CYBC
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS, ESCHERICHIA COLI
    Organism Taxid: 9606, 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
11WV1Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE
2ON71Ligand/Ion{1-[(2S,3S)-2-(2,3-DIHYDRO-1H-INDEN-2-YLMETHYL)-3-(3,5-DIMETHOXY-4-METHYLPHENYL)-3-HYDROXYPROPYL]-4-(METHOXYCARBONYL)-1H-PYRROL-3-YL}ACETIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:34 , LYS A:39 , HIS A:40 , VAL A:52 , THR A:109 , THR A:113 , ARG A:124 , GLN A:125 , ILE A:128 , ASP A:129 , LEU A:132 , MET A:198 , TRP A:271 , GLY A:274 , LEU A:278 , GLU A:293 , LYS A:294 , PHE A:296 , LEU A:297binding site for residue ON7 A 2001
2AC2SOFTWARELEU A:122 , THR A:130 , GLY A:179binding site for residue 1WV A 2002

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:24 -A:190
2A:188 -A:195
3A:284 -A:287

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z34)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z34)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z34)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z34)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:385
                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4z34 A   20 NEPQCFYNESIAFFYNRSGKHLATEWNTVSKLVMGLGITVCIFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIENCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKAMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLRNRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCCPQCDVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILG  327
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229  ||  1007      1017      1027      1037     |1061      1071      1081      1091      1101    || 252       262       272       282       292       302       312       322     
                                                                                                                                                                                                                                              232|                                      1043|                                            1106|                                                                               
                                                                                                                                                                                                                                              1001                                       1058                                              248
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z34)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z34)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z34)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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  4z34
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  C562_ECOLX | P0ABE7
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  LPAR1_HUMAN | Q92633
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C562_ECOLX | P0ABE7: 1apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3foo 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4eiy 4iaq 4iar 4ib4 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4qin 4rwa 4rwd 4u9d 4u9e 4yay 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu4 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5ndz 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi
        LPAR1_HUMAN | Q92633: 4z35 4z36

(-) Related Entries Specified in the PDB File

4z35 4z36