5DHG - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF NOCICEPTIN/ORPHANIN FQ PEPTIDE RECEPTOR (NOP) IN COMPLEX WITH C-35 (PSI COMMUNITY TARGET)

Authors :   R. L. Miller, A. A. Thompson, C. Trapella, R. Guerrini, D. Malfacini, N. G. W. Han, V. Cherezov, G. Calo, V. Katritch, R. C. Stevens, Gpcr Netwo

Date :   30 Aug 15 (Deposition) - 21 Oct 15 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A (1x),B (1x)

Keywords :   Nociceptin/Orphanin Fq Peptide Receptor, Nop, Orl-1, N/Ofq, Opioid Receptor, G Protein-Coupled Receptor, Gpcr, Membrane Protein, Lipidic Cubic Phase, Bret, Receptor-Ligand Conformational Pair, Structural Genomics, Psi-Biology, Gpcr Network, Signaling Protein, Psicnt-127 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. L. Miller, A. A. Thompson, C. Trapella, R. Guerrini, D. Malfacini, N. Patel, G. W. Han, V. Cherezov, G. Calo, V. Katritch, R. C. Stevens
The Importance Of Ligand-Receptor Conformational Pairs In Stabilization: Spotlight On The N/Ofq G Protein-Coupled Receptor.
Structure V. 23 2291 2015
PubMed-ID: 26526853 | Reference-DOI: 10.1016/J.STR.2015.07.024

Molecule 1 - SOLUBLE CYTOCHROME B562,NOCICEPTIN RECEPTOR
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Atcc Number	:	CRL-1711
	Expression System Cell Line	:	SF9
	Expression System Plasmid	:	PFASTBAC
	Expression System Strain	:	SF9
	Expression System Taxid	:	7108
	Expression System Vector Type	:	PLASMID
	Gene	:	CYBC, OPRL1, OOR, ORL1
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	ESCHERICHIA COLI, HOMO SAPIENS
	Organism Taxid	:	562, 9606
	Synonym	:	CYTOCHROME B-562,KAPPA-TYPE 3 OPIOID RECEPTOR,KOR-3,ORPHANIN FQ RECEPTOR

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	DGV	2	Ligand/Ion	1-BENZYL-N-{3-[4-(2,6-DICHLOROPHENYL)PIPERIDIN-1-YL]PROPYL}-D-PROLINAMIDE
2	OLA	5	Ligand/Ion	OLEIC ACID
3	OLC	1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	DGV	1	Ligand/Ion	1-BENZYL-N-{3-[4-(2,6-DICHLOROPHENYL)PIPERIDIN-1-YL]PROPYL}-D-PROLINAMIDE
2	OLA	3	Ligand/Ion	OLEIC ACID
3	OLC	-1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	DGV	1	Ligand/Ion	1-BENZYL-N-{3-[4-(2,6-DICHLOROPHENYL)PIPERIDIN-1-YL]PROPYL}-D-PROLINAMIDE
2	OLA	2	Ligand/Ion	OLEIC ACID
3	OLC	1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	DGV	-1	Ligand/Ion	1-BENZYL-N-{3-[4-(2,6-DICHLOROPHENYL)PIPERIDIN-1-YL]PROPYL}-D-PROLINAMIDE
2	OLA	-1	Ligand/Ion	OLEIC ACID
3	OLC	-1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:107 , ASP A:110 , TRP A:116 , ASP A:130 , TYR A:131 , MET A:134 , CYS A:200 , ILE A:219 , SER A:223 , GLN A:280 , VAL A:283 , TYR A:309	binding site for residue DGV A 1201
2	AC2	SOFTWARE	LYS A:124 , OLA A:1204	binding site for residue OLA A 1202
3	AC3	SOFTWARE	TYR A:89 , ALA A:143 , ASP A:147	binding site for residue OLA A 1203
4	AC4	SOFTWARE	ALA A:121 , OLA A:1202	binding site for residue OLA A 1204
5	AC5	SOFTWARE	GLN B:1171 , ASP B:1174 , TRP B:1180 , ASP B:1194 , TYR B:1195 , MET B:1198 , CYS B:1264 , ILE B:1283 , THR B:1369 , TYR B:1373	binding site for residue DGV B 1501
6	AC6	SOFTWARE	TYR B:1153 , ALA B:1207 , ASP B:1211 , VAL B:1225 , LYS B:1230	binding site for residue OLC B 1502
7	AC7	SOFTWARE	PHE B:1155 , GLN B:1232 , ASN B:1235 , TRP B:1239	binding site for residue OLA B 1503
8	AC8	SOFTWARE	GLY B:1128	binding site for residue OLA B 1504

Asymmetric Unit

No.	Residues
1	A:123	-	A:200
2	B:1187	-	B:1264

Asymmetric Unit

No.	Residues
1	Thr A:206	-	Pro A:207
2	Thr B:1270	-	Pro B:1271

(no "SAP(SNP)/Variant" information available for 5DHG)

(no "PROSITE Motif" information available for 5DHG)

(no "Exon" information available for 5DHG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhheeee......eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5dhg A   47 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFR  331
                                    56        66        76        86        96       106       116       126       136       146       156|      170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
                                                                                                                                       156|                                                                                                                                                                          
                                                                                                                                        161

Chain B from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee.....ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5dhg B 1003 LEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLEKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKF 1397
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102   || 1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253 ||   1268      1278      1288      1298      1318      1328      1338      1348      1358      1368      1378      1388         
                                                                                                                                1106|                                                                                                                                               1255|                                         1306|                                                                                
                                                                                                                                 1108                                                                                                                                                1261                                          1317

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5DHG)

(no "CATH Domain" information available for 5DHG)

(no "Pfam Domain" information available for 5DHG)

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		Thr B:1270 - Pro B:1271	[ RasMol ]

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4ea3	NOP IN COMPLEX WITH C24 LIGAND RELATED ID: GPCR-79 RELATED DB: TARGETTRACK

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Ligands, Modified Residues, Ions (3, 8)

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SS Bonds (2, 2)

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