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(-) Description

Title :  A TRIANGULAR CYTOCHROME B562 SUPERSTRUCTURE MEDIATED BY NI COORDINATION - MONOCLINIC FORM
 
Authors :  R. J. Radford, F. A. Tezcan
Date :  30 Dec 08  (Deposition) - 14 Jul 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  Four Helix Bundle, Electron Transport, Heme, Iron, Metal-Binding, Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. J. Radford, F. A. Tezcan
A Superprotein Triangle Driven By Nickel(Ii) Coordination: Exploiting Non-Natural Metal Ligands In Protein Self-Assembly
J. Am. Chem. Soc. V. 131 9136 2009
PubMed-ID: 19527025  |  Reference-DOI: 10.1021/JA9000695

(-) Compounds

Molecule 1 - SOLUBLE CYTOCHROME B562
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CYBC
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: CYTOCHROME B-562

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 48)

Asymmetric Unit (3, 48)
No.NameCountTypeFull Name
1HEM12Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI24Ligand/IonNICKEL (II) ION
3PXX12Ligand/IonN-1,10-PHENANTHROLIN-5-YLACETAMIDE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1HEM3Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI-1Ligand/IonNICKEL (II) ION
3PXX3Ligand/IonN-1,10-PHENANTHROLIN-5-YLACETAMIDE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1HEM3Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI-1Ligand/IonNICKEL (II) ION
3PXX3Ligand/IonN-1,10-PHENANTHROLIN-5-YLACETAMIDE
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1HEM3Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI-1Ligand/IonNICKEL (II) ION
3PXX3Ligand/IonN-1,10-PHENANTHROLIN-5-YLACETAMIDE
Biological Unit 4 (2, 6)
No.NameCountTypeFull Name
1HEM3Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI-1Ligand/IonNICKEL (II) ION
3PXX3Ligand/IonN-1,10-PHENANTHROLIN-5-YLACETAMIDE

(-) Sites  (48, 48)

Asymmetric Unit (48, 48)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:4 , MET A:7 , LEU A:10 , ASN A:11 , MET A:33 , PRO A:45 , PHE A:61 , GLY A:64 , PHE A:65 , CYS A:98 , CYS A:101 , HIS A:102 , ARG A:106BINDING SITE FOR RESIDUE HEM A 150
02AC2SOFTWAREGLN A:41 , LYS A:42 , ALA A:43 , PRO A:53 , MET A:58 , CYS A:59 , ALA A:62 , ASP B:73 , ASP B:74 , HIS B:77 , NI B:108BINDING SITE FOR RESIDUE PXX A 151
03AC3SOFTWAREALA A:1 , ASP A:39 , HOH A:166BINDING SITE FOR RESIDUE NI A 107
04AC4SOFTWAREHIS A:77 , HOH C:124 , HOH C:125 , PXX C:151BINDING SITE FOR RESIDUE NI A 108
05AC5SOFTWAREGLU B:4 , MET B:7 , MET B:33 , PRO B:46 , PHE B:61 , PHE B:65 , THR B:97 , CYS B:98 , CYS B:101 , HIS B:102 , TYR B:105 , ARG B:106BINDING SITE FOR RESIDUE HEM B 150
06AC6SOFTWAREGLN B:41 , LYS B:42 , ALA B:43 , PRO B:53 , MET B:58 , CYS B:59 , ALA B:62 , ASP C:73 , ASP C:74 , HIS C:77 , NI C:108 , HOH C:123BINDING SITE FOR RESIDUE PXX B 151
07AC7SOFTWAREALA B:1 , ASP B:39 , HOH B:171BINDING SITE FOR RESIDUE NI B 107
08AC8SOFTWAREPXX A:151 , HIS B:77 , HOH B:121BINDING SITE FOR RESIDUE NI B 108
09AC9SOFTWAREGLU C:4 , MET C:7 , PRO C:46 , PHE C:61 , PHE C:65 , THR C:97 , CYS C:98 , CYS C:101 , HIS C:102 , ARG C:106BINDING SITE FOR RESIDUE HEM C 150
10BC1SOFTWAREASP A:73 , ASP A:74 , HIS A:77 , NI A:108 , GLN C:41 , LYS C:42 , ALA C:43 , PRO C:53 , MET C:58 , CYS C:59 , ALA C:62BINDING SITE FOR RESIDUE PXX C 151
11BC2SOFTWAREALA C:1 , ASP C:39BINDING SITE FOR RESIDUE NI C 107
12BC3SOFTWAREHOH B:122 , PXX B:151 , HIS C:77 , HOH C:123BINDING SITE FOR RESIDUE NI C 108
13BC4SOFTWAREGLU D:4 , MET D:7 , ASN D:11 , PRO D:45 , PRO D:46 , PHE D:61 , PHE D:65 , CYS D:98 , CYS D:101 , HIS D:102 , TYR D:105 , ARG D:106BINDING SITE FOR RESIDUE HEM D 150
14BC5SOFTWAREGLN D:41 , LYS D:42 , ALA D:43 , PRO D:53 , MET D:58 , CYS D:59 , ALA D:62 , ASP E:73 , ASP E:74 , HIS E:77 , NI E:108BINDING SITE FOR RESIDUE PXX D 151
15BC6SOFTWAREALA D:1 , ASP D:39BINDING SITE FOR RESIDUE NI D 107
16BC7SOFTWAREHIS D:77 , HOH F:118 , HOH F:119 , PXX F:151BINDING SITE FOR RESIDUE NI D 108
17BC8SOFTWARELEU E:3 , GLU E:4 , MET E:7 , ASN E:11 , PHE E:61 , PHE E:65 , LEU E:68 , CYS E:98 , CYS E:101 , HIS E:102 , TYR E:105 , ARG E:106BINDING SITE FOR RESIDUE HEM E 150
18BC9SOFTWAREGLN E:41 , LYS E:42 , ALA E:43 , PRO E:53 , MET E:58 , CYS E:59 , ALA E:62 , ASP F:73 , ASP F:74 , HIS F:77 , NI F:108BINDING SITE FOR RESIDUE PXX E 151
19CC1SOFTWAREALA E:1 , ASP E:39 , HOH E:149BINDING SITE FOR RESIDUE NI E 107
20CC2SOFTWAREHOH D:113 , HOH D:114 , PXX D:151 , HIS E:77BINDING SITE FOR RESIDUE NI E 108
21CC3SOFTWARELYS A:85 , GLU F:4 , MET F:7 , PRO F:45 , PHE F:61 , PHE F:65 , CYS F:98 , CYS F:101 , HIS F:102 , TYR F:105 , ARG F:106BINDING SITE FOR RESIDUE HEM F 150
22CC4SOFTWAREASP D:73 , ASP D:74 , HIS D:77 , NI D:108 , GLN F:41 , LYS F:42 , ALA F:43 , PRO F:53 , MET F:58 , CYS F:59 , ALA F:62BINDING SITE FOR RESIDUE PXX F 151
23CC5SOFTWAREALA F:1 , ASP F:39BINDING SITE FOR RESIDUE NI F 107
24CC6SOFTWAREHOH E:117 , PXX E:151 , HIS F:77 , HOH F:116BINDING SITE FOR RESIDUE NI F 108
25CC7SOFTWAREGLU G:4 , MET G:7 , ASN G:11 , LEU G:14 , PRO G:46 , PHE G:61 , PHE G:65 , CYS G:98 , CYS G:101 , HIS G:102 , TYR G:105 , ARG G:106BINDING SITE FOR RESIDUE HEM G 150
26CC8SOFTWAREGLN G:41 , LYS G:42 , ALA G:43 , PRO G:53 , MET G:58 , CYS G:59 , ASP H:73 , ASP H:74 , HIS H:77 , NI H:108BINDING SITE FOR RESIDUE PXX G 151
27CC9SOFTWAREALA G:1 , ASP G:39BINDING SITE FOR RESIDUE NI G 107
28DC1SOFTWAREHIS G:77 , HOH G:112 , HOH I:110 , PXX I:151BINDING SITE FOR RESIDUE NI G 108
29DC2SOFTWAREGLU H:4 , MET H:7 , ASN H:11 , LEU H:14 , PHE H:61 , PHE H:65 , THR H:97 , CYS H:98 , CYS H:101 , HIS H:102 , TYR H:105 , ARG H:106BINDING SITE FOR RESIDUE HEM H 150
30DC3SOFTWAREGLN H:41 , LYS H:42 , ALA H:43 , PRO H:53 , MET H:58 , CYS H:59 , ALA H:62 , ASP I:73 , ASP I:74 , HIS I:77 , NI I:108BINDING SITE FOR RESIDUE PXX H 151
31DC4SOFTWAREALA H:1 , ASP H:39BINDING SITE FOR RESIDUE NI H 107
32DC5SOFTWAREHOH G:109 , HOH G:110 , PXX G:151 , HIS H:77BINDING SITE FOR RESIDUE NI H 108
33DC6SOFTWAREGLU I:4 , MET I:7 , ASN I:11 , PRO I:45 , PRO I:46 , PHE I:61 , PHE I:65 , LEU I:68 , CYS I:98 , CYS I:101 , HIS I:102 , TYR I:105 , ARG I:106BINDING SITE FOR RESIDUE HEM I 150
34DC7SOFTWAREASP G:73 , ASP G:74 , HIS G:77 , NI G:108 , GLN I:41 , LYS I:42 , ALA I:43 , PRO I:53 , MET I:58 , CYS I:59BINDING SITE FOR RESIDUE PXX I 151
35DC8SOFTWAREALA I:1 , ASP I:39BINDING SITE FOR RESIDUE NI I 107
36DC9SOFTWAREHOH H:111 , HOH H:112 , PXX H:151 , HIS I:77BINDING SITE FOR RESIDUE NI I 108
37EC1SOFTWAREGLU J:4 , MET J:7 , ASN J:11 , PRO J:45 , PRO J:46 , PHE J:61 , PHE J:65 , CYS J:98 , CYS J:101 , HIS J:102 , TYR J:105 , ARG J:106BINDING SITE FOR RESIDUE HEM J 150
38EC2SOFTWAREGLN J:41 , LYS J:42 , ALA J:43 , PRO J:53 , MET J:58 , CYS J:59 , ALA J:62 , ASP L:73 , ASP L:74 , HIS L:77 , NI L:108BINDING SITE FOR RESIDUE PXX J 151
39EC3SOFTWAREALA J:1 , ASP J:39 , HOH J:182BINDING SITE FOR RESIDUE NI J 107
40EC4SOFTWAREHIS J:77 , HOH K:112 , HOH K:113 , PXX K:151BINDING SITE FOR RESIDUE NI J 108
41EC5SOFTWAREGLU K:4 , MET K:7 , ASN K:11 , MET K:33 , PRO K:46 , PHE K:61 , PHE K:65 , CYS K:98 , CYS K:101 , HIS K:102 , TYR K:105 , ARG K:106BINDING SITE FOR RESIDUE HEM K 150
42EC6SOFTWAREASP J:74 , HIS J:77 , NI J:108 , GLN K:41 , LYS K:42 , ALA K:43 , PRO K:53 , MET K:58 , CYS K:59 , HOH K:112BINDING SITE FOR RESIDUE PXX K 151
43EC7SOFTWAREALA K:1 , ASP K:39BINDING SITE FOR RESIDUE NI K 107
44EC8SOFTWAREHIS K:77 , HOH K:128 , HOH K:129 , PXX L:151BINDING SITE FOR RESIDUE NI K 108
45EC9SOFTWAREGLU L:4 , MET L:7 , PRO L:45 , PRO L:46 , PHE L:61 , PHE L:65 , THR L:97 , CYS L:98 , CYS L:101 , HIS L:102 , ARG L:106BINDING SITE FOR RESIDUE HEM L 150
46FC1SOFTWAREASP K:73 , ASP K:74 , HIS K:77 , NI K:108 , GLN L:41 , LYS L:42 , ALA L:43 , PRO L:53 , MET L:58 , CYS L:59BINDING SITE FOR RESIDUE PXX L 151
47FC2SOFTWAREALA L:1 , ASP L:39 , HOH L:194BINDING SITE FOR RESIDUE NI L 107
48FC3SOFTWAREHOH J:126 , PXX J:151 , HIS L:77 , HOH L:127BINDING SITE FOR RESIDUE NI L 108

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FOO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FOO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FOO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FOO)

(-) Exons   (0, 0)

(no "Exon" information available for 3FOO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3fooa_ A: automated matches                                                                               SCOP domains
               CATH domains 3fooA00 A:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo A   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain B from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3foob_ B: automated matches                                                                               SCOP domains
               CATH domains 3fooB00 B:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo B   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain C from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3fooc_ C: automated matches                                                                               SCOP domains
               CATH domains 3fooC00 C:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo C   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain D from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3food_ D: automated matches                                                                               SCOP domains
               CATH domains 3fooD00 D:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo D   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain E from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3fooe_ E: automated matches                                                                               SCOP domains
               CATH domains 3fooE00 E:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo E   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain F from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3foof_ F: automated matches                                                                               SCOP domains
               CATH domains 3fooF00 F:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo F   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain G from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3foog_ G: automated matches                                                                               SCOP domains
               CATH domains 3fooG00 G:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo G   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain H from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3fooh_ H: automated matches                                                                               SCOP domains
               CATH domains 3fooH00 H:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo H   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain I from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3fooi_ I: automated matches                                                                               SCOP domains
               CATH domains 3fooI00 I:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo I   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain J from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3fooj_ J: automated matches                                                                               SCOP domains
               CATH domains 3fooJ00 J:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo J   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain K from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3fook_ K: automated matches                                                                               SCOP domains
               CATH domains 3fooK00 K:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo K   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100      


Chain L from PDB  Type:PROTEIN  Length:106
 aligned with C562_ECOLX | P0ABE7 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:106
                                    32        42        52        62        72        82        92       102       112       122      
           C562_ECOLX    23 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR 128
               SCOP domains d3fool_ L: automated matches                                                                               SCOP domains
               CATH domains 3fooL00 L:1-106  [code=1.20.120.10, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3foo L   1 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMCDFAAGFHILVGQIDDALHLANEGKVKEAQAAAEQLKTTCNACHQKYR 106
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FOO)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (C562_ECOLX | P0ABE7)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0022900    electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  3foo
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  C562_ECOLX | P0ABE7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C562_ECOLX | P0ABE7: 1apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4eiy 4iaq 4iar 4ib4 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4qin 4rwa 4rwd 4u9d 4u9e 4yay 4z34 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu4 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5ndz 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi

(-) Related Entries Specified in the PDB File

256b 2qla 3fop