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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF 5-HT2B-BRIL IN COMPLEX WITH ERGOTAMINE
 
Authors :  D. Wacker, C. Wang, V. Katritch, G. W. Han, X. Huang, E. Vardy, J. D. Mccor Y. Jiang, M. Chu, F. Y. Siu, W. Liu, H. E. Xu, V. Cherezov, B. L. Roth, R. C. Gpcr Network (Gpcr)
Date :  07 Dec 12  (Deposition) - 13 Mar 13  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Ergotamine, Novel Protein Engineering, Gpcr Network, Membrane Protein, Psi-Biology, Structural Genomics, Gpcr, Signaling Protein, Electron Transport, Gpcr Dock (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Wacker, C. Wang, V. Katritch, G. W. Han, X. P. Huang, E. Vardy, J. D. Mccorvy, Y. Jiang, M. Chu, F. Y. Siu, W. Liu, H. E. Xu, V. Cherezov, B. L. Roth, R. C. Stevens
Structural Features For Functional Selectivity At Serotonin Receptors.
Science V. 340 615 2013
PubMed-ID: 23519215  |  Reference-DOI: 10.1126/SCIENCE.1232808

(-) Compounds

Molecule 1 - CHIMERA PROTEIN OF HUMAN 5-HYDROXYTRYPTAMINE RECEPTOR 2B AND E. COLI SOLUBLE CYTOCHROME B562
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFASTBAC
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Gene: HTR2B, CYBC
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS, ESCHERICHIA COLI
    Organism Taxid: 9606, 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 11)

Asymmetric/Biological Unit (7, 11)
No.NameCountTypeFull Name
1CLR1Ligand/IonCHOLESTEROL
2ERM1Ligand/IonERGOTAMINE
3OLA2Ligand/IonOLEIC ACID
4OLB3Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
5OLC1Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
6PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
7PLM1Ligand/IonPALMITIC ACID

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:135 , VAL A:136 , SER A:139 , THR A:140 , VAL A:208 , LEU A:209 , THR A:210 , LYS A:211 , MET A:218 , ALA A:225 , TRP A:337 , PHE A:340 , ASN A:344 , LEU A:347 , GLN A:359 , HOH A:2020BINDING SITE FOR RESIDUE ERM A 2001
02AC2SOFTWAREILE A:66 , THR A:343 , ILE A:395 , THR A:396 , CYS A:397BINDING SITE FOR RESIDUE PLM A 2002
03AC3SOFTWAREGLY A:70 , THR A:73 , TYR A:394 , TYR A:399BINDING SITE FOR RESIDUE CLR A 2003
04AC4SOFTWARESER A:150 , MET A:233 , THR A:240 , LEU A:326 , HOH A:2017BINDING SITE FOR RESIDUE OLC A 2004
05AC5SOFTWAREPRO A:191 , ILE A:192BINDING SITE FOR RESIDUE OLB A 2005
06AC6SOFTWAREMET A:360 , TYR A:399 , OLB A:2007BINDING SITE FOR RESIDUE OLB A 2006
07AC7SOFTWARELEU A:81 , TYR A:399 , OLB A:2006BINDING SITE FOR RESIDUE OLB A 2007
08AC8SOFTWARETRP A:56BINDING SITE FOR RESIDUE OLA A 2008
09AC9SOFTWAREGLY A:185 , LYS A:193 , ASP A:216 , PHE A:217BINDING SITE FOR RESIDUE OLA A 2009
10BC1SOFTWARETYR A:380 , ASN A:384BINDING SITE FOR RESIDUE PEG A 2010
11BC2SOFTWAREILE A:182BINDING SITE FOR RESIDUE PEG A 2011

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:128 -A:207
2A:350 -A:353

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IB4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IB4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IB4)

(-) Exons   (0, 0)

(no "Exon" information available for 4IB4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ib4 A   48 EEQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVVWLISIGIAIPVPIKGIETNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKKAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLQTISNEQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYR  400
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197|      210       220       230       240      1002      1012      1022      1032      1042|     1068      1078      1088      1098       315       325       335       345       355       365       375       385       395     
                                                                                                                                                                               197|                                            248|                                     1042|                                           1106|                                                                                      
                                                                                                                                                                                201                                            1001                                      1059                                             314
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IB4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IB4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IB4)

(-) Gene Ontology  (70, 70)

Asymmetric/Biological Unit(hide GO term definitions)

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  C562_ECOLX | P0ABE7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        5HT2B_HUMAN | P41595: 4nc3 5tvn
        C562_ECOLX | P0ABE7: 1apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3foo 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4eiy 4iaq 4iar 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4qin 4rwa 4rwd 4u9d 4u9e 4yay 4z34 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu4 5iu7 5iu8 5iua 5iub 5jtb 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5ndz 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi

(-) Related Entries Specified in the PDB File

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