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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF A2AAR-BRIL WITH BOUND IODIDE IONS
 
Authors :  I. Melnikov, V. Polovinkin, M. Shevtsov, V. Borshchevskiy, V. Cherezo A. Popov, V. Gordeliy
Date :  09 May 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Protein, Iodide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Melnikov, V. Polovinkin, K. Kovalev, I. Gushchin, M. Shevtsov, V. Shevchenko, A. Mishin, A. Alekseev, F. Rodriguez-Valera, V. Borshchevskiy, V. Cherezov, G. A. Leonard, V. Gordeliy, A. Popov
Fast Iodide-Sad Phasing For High-Throughput Membrane Protei Structure Determination.
Sci Adv V. 3 02952 2017
PubMed-ID: 28508075  |  Reference-DOI: 10.1126/SCIADV.1602952

(-) Compounds

Molecule 1 - ADENOSINE RECEPTOR A2A,SOLUBLE CYTOCHROME B562,ADENOSINE RECEPTOR A2A
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 2-208,UNP RESIDUES 23-217,UNP RESIDUES 219- 316,UNP RESIDUES 2-208,UNP RESIDUES 23-217,UNP RESIDUES 219-316,UNP RESIDUES 2-208,UNP RESIDUES 23-217,UNP RESIDUES 219-316
    Gene: ADORA2A, ADORA2, CYBC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS, ESCHERICHIA COLI
    Organism Taxid: 9606, 562
    Synonym: CYTOCHROME B-562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 23)

Asymmetric/Biological Unit (7, 23)
No.NameCountTypeFull Name
1CLR3Ligand/IonCHOLESTEROL
2IOD6Ligand/IonIODIDE ION
3OLA4Ligand/IonOLEIC ACID
4OLB1Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
5OLC6Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
6PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
7ZMA1Ligand/Ion4-{2-[(7-AMINO-2-FURAN-2-YL[1,2,4]TRIAZOLO[1,5-A][1,3,5]TRIAZIN-5-YL)AMINO]ETHYL}PHENOL

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:85 , PHE A:168 , GLU A:169 , MET A:177 , TRP A:246 , LEU A:249 , HIS A:250 , ASN A:253 , HIS A:264 , MET A:270 , HOH A:1317 , HOH A:1337binding site for residue ZMA A 1201
02AC2SOFTWAREALA A:72 , ALA A:73 , GLY A:76 , ILE A:80 , CLR A:1204 , OLC A:1218 , OLC A:1220binding site for residue CLR A 1202
03AC3SOFTWAREPRO A:248 , CYS A:262 , SER A:263 , OLA A:1213 , OLA A:1216binding site for residue CLR A 1203
04AC4SOFTWAREPHE A:182 , CYS A:254 , PHE A:258 , CLR A:1202 , OLC A:1220binding site for residue CLR A 1204
05AC5SOFTWAREARG A:300 , ARG A:304binding site for residue IOD A 1205
06AC6SOFTWARELYS A:301binding site for residue IOD A 1206
07AC7SOFTWAREASN A:175binding site for residue IOD A 1207
08AC8SOFTWAREARG A:206 , GLN A:207binding site for residue IOD A 1208
09AC9SOFTWARELEU A:110binding site for residue IOD A 1209
10AD1SOFTWAREARG A:120 , PEG A:1212binding site for residue PEG A 1211
11AD2SOFTWAREILE A:104 , PEG A:1211binding site for residue PEG A 1212
12AD3SOFTWARESER A:263 , CLR A:1203binding site for residue OLA A 1213
13AD4SOFTWARETHR A:65 , THR A:68 , PHE A:70 , OLA A:1216 , OLC A:1220binding site for residue OLA A 1214
14AD5SOFTWAREGLY A:5 , LEU A:267binding site for residue OLA A 1215
15AD6SOFTWAREPHE A:255 , CYS A:262 , CLR A:1203 , OLA A:1214 , OLC A:1220binding site for residue OLA A 1216
16AD7SOFTWARETYR A:43 , VAL A:46 , TRP A:129 , OLB A:1223binding site for residue OLC A 1217
17AD8SOFTWAREPHE A:258 , CLR A:1202 , OLC A:1222binding site for residue OLC A 1218
18AD9SOFTWAREHIS A:75 , MET A:140 , LEU A:141 , TYR A:179 , OLC A:1222binding site for residue OLC A 1219
19AE1SOFTWARETHR A:65 , PHE A:70 , CYS A:71 , CLR A:1202 , CLR A:1204 , OLA A:1214 , OLA A:1216binding site for residue OLC A 1220
20AE2SOFTWAREMET A:140 , OLC A:1222binding site for residue OLC A 1221
21AE3SOFTWARETYR A:179 , PHE A:258 , OLC A:1218 , OLC A:1219 , OLC A:1221 , HOH A:1313binding site for residue OLC A 1222
22AE4SOFTWARETRP A:32 , TYR A:43 , ARG A:205 , OLC A:1217binding site for residue OLB A 1223

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:71 -A:159
2A:74 -A:146
3A:77 -A:166
4A:259 -A:262

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JTB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JTB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JTB)

(-) Exons   (0, 0)

(no "Exon" information available for 5JTB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh.....eee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jtb A   -1 GAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHV  307
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208|     1010      1020      1030      1040 ||   1067      1077      1087      1097       219       229       239       249       259       269       279       289       299        
                                                                                                                                                                                                                                           208|                                     1042|                                          1106|                                                                                        
                                                                                                                                                                                                                                           1001                                      1060                                            219
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JTB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JTB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JTB)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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  5jtb
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  AA2AR_HUMAN | P29274
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  C562_ECOLX | P0ABE7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AA2AR_HUMAN | P29274: 1mmh 1upe 2ydo 2ydv 3eml 3pwh 3qak 3rey 3rfm 3uza 3uzc 3vg9 3vga 4eiy 4ug2 4uhr 5g53 5iu4 5iu7 5iu8 5iua 5iub 5k2a 5k2b 5k2c 5k2d 5uig 5uvi
        C562_ECOLX | P0ABE7: 1apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3foo 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4eiy 4iaq 4iar 4ib4 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4qin 4rwa 4rwd 4u9d 4u9e 4yay 4z34 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu4 5iu7 5iu8 5iua 5iub 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5ndz 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi

(-) Related Entries Specified in the PDB File

4eiy 4EIY CONTAINS THE SAME PROTEIN