4EA3 - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF THE N/OFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE MIMETIC

Authors :   A. A. Thompson, W. Liu, E. Chun, V. Katritch, H. Wu, E. Vardy, X. P. Huang, C. Trapella, R. Guerrini, G. Calo, B. L. Roth, V. Cherezov, R. C. Steven Network (Gpcr)

Date :   22 Mar 12 (Deposition) - 25 Apr 12 (Release) - 30 May 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.01

Chains :   Asym. Unit : A,B
Biol. Unit 1: A (1x),B (1x)
Biol. Unit 2: A (1x),B (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Psi-Biology Gpcr Network, Structural Genomics, Gpcr Membrane Protein 7Tm Nop Orl1 Cytochrome B562, Receptor, Nociceptin Orphanin Fq Compound 24 Opioid, Fusion, Membrane Transmembrane, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. A. Thompson, W. Liu, E. Chun, V. Katritch, H. Wu, E. Vardy, X. P. Huang C. Trapella, R. Guerrini, G. Calo, B. L. Roth, V. Cherezov, R. C. Steven
Structure Of The Nociceptin/Orphanin Fq Receptor In Complex With A Peptide Mimetic.
Nature V. 485 395 2012
PubMed-ID: 22596163 | Reference-DOI: 10.1038/NATURE11085

Molecule 1 - FUSION PROTEIN OF NOCICEPTIN RECEPTOR AND CYTOCHROME B562
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Strain	:	SF9
	Expression System Taxid	:	7108
	Expression System Vector Type	:	PFASTBAC1
	Gene	:	OOR, OPRL1, ORL1, CYBC
	Mutation	:	YES
	Organism Scientific	:	HOMO SAPIENS, ESCHERICHIA COLI
	Organism Taxid	:	9606, 562
	Synonym	:	OP4, KOR-3, ORL1, NOCICEPTIN/ORPHANIN FQ RECEPTOR, CYTOCHROME B-562

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A (1x)	B (1x)
Biological Unit 2 (1x)	:	A (1x)	B (1x)
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 5)

No.	Name	Count	Type	Full Name
1	0NN	2	Ligand/Ion	1-BENZYL-N-[3-(1'H,3H-SPIRO[2-BENZOFURAN-1,4'-PIPERIDIN]-1'-YL)PROPYL]-D-PROLINAMIDE
2	OLA	1	Ligand/Ion	OLEIC ACID
3	OLB	1	Ligand/Ion	(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4	OLC	1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	0NN	1	Ligand/Ion	1-BENZYL-N-[3-(1'H,3H-SPIRO[2-BENZOFURAN-1,4'-PIPERIDIN]-1'-YL)PROPYL]-D-PROLINAMIDE
2	OLA	1	Ligand/Ion	OLEIC ACID
3	OLB	1	Ligand/Ion	(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4	OLC	-1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	0NN	1	Ligand/Ion	1-BENZYL-N-[3-(1'H,3H-SPIRO[2-BENZOFURAN-1,4'-PIPERIDIN]-1'-YL)PROPYL]-D-PROLINAMIDE
2	OLA	1	Ligand/Ion	OLEIC ACID
3	OLB	1	Ligand/Ion	(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4	OLC	-1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 3 (4, 5)

No.	Name	Count	Type	Full Name
1	0NN	2	Ligand/Ion	1-BENZYL-N-[3-(1'H,3H-SPIRO[2-BENZOFURAN-1,4'-PIPERIDIN]-1'-YL)PROPYL]-D-PROLINAMIDE
2	OLA	1	Ligand/Ion	OLEIC ACID
3	OLB	1	Ligand/Ion	(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4	OLC	1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:107 , ASP A:130 , TYR A:131 , MET A:134 , PHE A:135 , LEU A:201 , ILE A:219 , SER A:223 , TRP A:276 , GLN A:280 , VAL A:283 , TYR A:309	BINDING SITE FOR RESIDUE 0NN A 1501
2	AC2	SOFTWARE	TYR A:89 , ASP A:147 , VAL A:150	BINDING SITE FOR RESIDUE OLB A 1502
3	AC3	SOFTWARE	VAL A:55 , THR A:109 , LEU A:112 , LEU A:113 , PHE A:115 , PRO A:117 , CYS B:70 , TYR B:74	BINDING SITE FOR RESIDUE OLA A 1503
4	AC4	SOFTWARE	GLN B:107 , ASP B:110 , ILE B:127 , ASP B:130 , TYR B:131 , MET B:134 , CYS B:200 , ILE B:219 , SER B:223 , GLN B:280 , VAL B:283 , TYR B:309	BINDING SITE FOR RESIDUE 0NN B 1501
5	AC5	SOFTWARE	VAL A:281 , VAL A:290 , TYR B:89 , ASP B:147 , VAL B:161 , LYS B:166	BINDING SITE FOR RESIDUE OLC B 1502

Asymmetric Unit

No.	Residues
1	A:123	-	A:200
2	B:123	-	B:200

Asymmetric Unit

No.	Residues
1	Thr A:206	-	Pro A:207
2	Thr B:206	-	Pro B:207

(no "SAP(SNP)/Variant" information available for 4EA3)

(no "PROSITE Motif" information available for 4EA3)

(no "Exon" information available for 4EA3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhheee........eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ea3 A   47 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFR  331
                                    56        66        76        86        96       106       116       126       136       146       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323        
                                                                                                                                      155|                                                                                                                                                                        
                                                                                                                                       163

Chain B from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee.....ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ea3 B 1003 LEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLEKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKF  333
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102   ||   52        62        72        82        92       102       112       122       132       142       152       162       172       182       197       207       217       227       237    || 257       267       277       287       297       307       317       327      
                                                                                                                                1106|                                                                                                                                             191|                                          242|                                                                                
                                                                                                                                   47                                                                                                                                              197                                           253

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4EA3)

(no "CATH Domain" information available for 4EA3)

(no "Pfam Domain" information available for 4EA3)

Asymmetric Unit(hide GO term definitions)

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		Thr A:206 - Pro A:207	[ RasMol ]
		Thr B:206 - Pro B:207	[ RasMol ]

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