5G53 - JenaLib

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Title :   STRUCTURE OF THE ADENOSINE A2A RECEPTOR BOUND TO AN ENGINEERED G PROTEIN

Authors :   B. Carpenter, R. Nehme, T. Warne, A. G. W. Leslie, C. G. Tate

Date :   19 May 16 (Deposition) - 03 Aug 16 (Release) - 08 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Signaling Protein, G Protein Coupled Receptor, Adenosine Receptor, Seven-Helix Receptor, Integral Membrane Protein, Gpcr, Engineered G Protein, Gpcr-G Protein Complex, Mini-Gs (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Carpenter, R. Nehme, T. Warne, A. G. W. Leslie, C. G. Tate
Structure Of The Adenosine A2A Receptor Bound To An Engineered G Protein
Nature V. 536 104 2016
PubMed-ID: 27462812 | Reference-DOI: 10.1038/NATURE18966
(for further references see the PDB file header)

Molecule 1 - ADENOSINE RECEPTOR A2A
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Common	:	CABBAGE LOOPER
	Expression System Plasmid	:	PBACPAK8
	Expression System Taxid	:	7111
	Expression System Vector Type	:	BACULOVIRUS FLASHBAC ULTRA
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	THE CONSTRUCT WAS TRUNCATED AFTER RESIDUE 308 OF THE A2A SEQUENCE, BUT HAS A 6 RESIDUE SEQUENCE THAT INCLUDES THE TEV CLEAVAGE SEQUENCE (ENLYFQ) AT THE C- TERMINUS
	Tissue	:	BRAIN

Molecule 2 - ENGINEERED DOMAIN OF HUMAN G ALPHA S LONG ISOFORM
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	CODONPLUS-RIL
	Expression System Vector	:	PET15B
	Expression System Vector Type	:	MULTI-COPY PLASMID
	Fragment	:	RAS DOMAIN, RESIDUES 26-60 AND 847-1037
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	DELETIONS 1-25,65-203,255-264 INSERTION GGSGGSGG LINKING RESIDUES 64 AND 204
	Tissue	:	BRAIN

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NEC	2	Ligand/Ion	N-ETHYL-5'-CARBOXAMIDO ADENOSINE
3	SOG	2	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NEC	1	Ligand/Ion	N-ETHYL-5'-CARBOXAMIDO ADENOSINE
3	SOG	2	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	GDP	-1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NEC	1	Ligand/Ion	N-ETHYL-5'-CARBOXAMIDO ADENOSINE
3	SOG	-1	Ligand/Ion	2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:84 , LEU A:85 , THR A:88 , GLN A:89 , PHE A:168 , GLU A:169 , MET A:177 , ASN A:181 , TRP A:246 , HIS A:250 , ASN A:253 , MET A:270 , ILE A:274 , SER A:277 , HIS A:278	BINDING SITE FOR RESIDUE NEC A 400
2	AC2	SOFTWARE	LEU A:26 , PRO A:285 , PHE A:286 , TYR A:290 , ARG A:296 , PHE A:299 , ARG A:300	BINDING SITE FOR RESIDUE SOG A 501
3	AC3	SOFTWARE	THR A:119 , ALA A:126	BINDING SITE FOR RESIDUE SOG A 502
4	AC4	SOFTWARE	VAL B:84 , LEU B:85 , THR B:88 , GLN B:89 , PHE B:168 , GLU B:169 , MET B:177 , ASN B:181 , TRP B:246 , HIS B:250 , ASN B:253 , MET B:270 , ILE B:274 , SER B:277 , HIS B:278	BINDING SITE FOR RESIDUE NEC B 400
5	AC5	SOFTWARE	ALA C:48 , ASP C:49 , ASN C:50 , SER C:51 , GLY C:52 , LYS C:53 , SER C:54 , THR C:55 , ASN C:292 , LYS C:293 , ASP C:295 , CYS C:365	BINDING SITE FOR RESIDUE GDP C 400

Asymmetric Unit

No.	Residues
1	A:71	-	A:159
2	A:74	-	A:146
3	A:77	-	A:166
4	A:259	-	A:262
5	B:71	-	B:159
6	B:74	-	B:146
7	B:77	-	B:166
8	B:259	-	B:262

(no "Cis Peptide Bond" information available for 5G53)

(no "SAP(SNP)/Variant" information available for 5G53)

(no "PROSITE Motif" information available for 5G53)

(no "Exon" information available for 5G53)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g53 A   6 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLENLY 312
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145||     167       177       187       197       207   ||  229       239       249       259       269       279       289       299       309   
                                                                                                                                                                      146|                                                 211|                                                                                        
                                                                                                                                                                       159                                                  224

Chain B from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh......ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g53 B   6 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS 305
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205 ||    231       241       251       261       271       281       291       301    
                                                                                                                                                                                                                                   207|                                                                                 
                                                                                                                                                                                                                                    224

Chain C from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhh.eeeeee..eeeeeee......hhhhhhh......eeeeeee....hhhhhhhhhhhhhhhh......eeeeeeehhhhhhhhhhhh..hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g53 C  40 THRLLLLGADNSGKSTIVKQMRFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVDSSDYNRLQEALNDFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCTENARRIFNDCRDIIQRMHLRQYELL 394
                                    49        59 ||    215       225       235       245       265       275       285       295       305       315       325       335       345       355       365|      378       388      
                                                61|                                           254|                                                                                                 365|                         
                                                208                                            265                                                                                                  369

Chain D from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhh.eeeeee..eeeeeee.....eeeeeee....hhhhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhh..hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh......eeeee......hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g53 D  39 ATHRLLLLGADNSGKSTIVKQMRFETKFQVDKVNFHMFDVNDVTAIIFVVDSSDYNRLQEALNDFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQRMHLRQYEL 393
                                    48        58  ||   214       224|      248     ||268       278       288       298       308       318       328       338       348       358       368       378       388     
                                                 61|             224|            254|                                                                                                                                
                                                 208              239             265

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5G53)

(no "CATH Domain" information available for 5G53)

(no "Pfam Domain" information available for 5G53)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (8, 8)

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