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(-) Description

Title :  CRYSTAL STRUCTURE OF STABILIZED A2A ADENOSINE RECEPTOR A2AR-STAR2-BRIL IN COMPLEX WITH COMPOUND 12X AT 2.1A RESOLUTION
 
Authors :  E. Segala, D. Guo, R. K. Y. Cheng, A. Bortolato, F. Deflorian, A. S. Dore, J. C. Errey, L. H. Heitman, A. P. Ijzerman, F. H. Marshall, R. M. Cooke
Date :  17 Mar 16  (Deposition) - 29 Jun 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  G-Protein-Coupled Receptor, Integral Membrane Protein, Chimera, Thermostabilizing Mutations, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Segala, D. Guo, R. K. Cheng, A. Bortolato, F. Deflorian, A. S. Dore, J. C. Errey, L. H. Heitman, A. P. Ijzerman, F. H. Marshall, R. M. Cooke
Controlling The Dissociation Of Ligands From The Adenosine A2A Receptor Through Modulation Of Salt Bridge Strength.
J. Med. Chem. V. 59 6470 2016
PubMed-ID: 27312113  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00653

(-) Compounds

Molecule 1 - ADENOSINE RECEPTOR A2A,SOLUBLE CYTOCHROME B562,ADENOSINE RECEPTOR A2A
    ChainsA
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System Cell LineTNI PRO
    Expression System CommonCABBAGE LOOPER
    Expression System PlasmidPFAST-BAC
    Expression System Taxid7111
    Expression System Vector TypeBACMID
    GeneADORA2A, ADORA2, CYBC
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS, ESCHERICHIA COLI
    Organism Taxid9606, 562
    SynonymCYTOCHROME B-562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 30)

Asymmetric/Biological Unit (6, 30)
No.NameCountTypeFull Name
16DV1Ligand/IonN~5~-{2-[4-(2,4-DIFLUOROPHENYL)PIPERAZIN-1-YL]ETHYL}-2-(FURAN-2-YL)[1,2,4]TRIAZOLO[1,5-A][1,3,5]TRIAZINE-5,7-DIAMINE
2CLR3Ligand/IonCHOLESTEROL
3NA1Ligand/IonSODIUM ION
4OLA16Ligand/IonOLEIC ACID
5OLB7Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
6OLC2Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:52 , SER A:91 , HOH A:2524 , HOH A:2552 , HOH A:2564binding site for residue NA A 2400
02AC2SOFTWARELEU A:85 , PHE A:168 , GLU A:169 , MET A:177 , TRP A:246 , LEU A:249 , HIS A:250 , ASN A:253 , HIS A:264 , ALA A:265 , PRO A:266 , LEU A:267 , MET A:270 , ILE A:274 , HOH A:2560 , HOH A:2566 , HOH A:2569 , HOH A:2573binding site for residue 6DV A 2401
03AC3SOFTWAREALA A:72 , ALA A:73 , GLY A:76 , ILE A:80 , CLR A:2404 , OLB A:2421 , OLB A:2424binding site for residue CLR A 2402
04AC4SOFTWAREPRO A:248 , SER A:263 , OLB A:2422binding site for residue CLR A 2403
05AC5SOFTWARELEU A:247 , CYS A:254 , PHE A:255 , CYS A:259 , CLR A:2402 , OLA A:2419 , OLB A:2421 , OLB A:2424 , HOH A:2563binding site for residue CLR A 2404
06AC6SOFTWARETHR A:65 , OLB A:2422 , OLB A:2424binding site for residue OLA A 2405
07AC7SOFTWAREPRO A:266binding site for residue OLA A 2406
08AC8SOFTWAREPHE A:44 , ALA A:97 , VAL A:116 , HOH A:2508binding site for residue OLA A 2407
09AC9SOFTWAREGLY A:5 , SER A:6 , LEU A:267 , TYR A:271 , HOH A:2506binding site for residue OLA A 2408
10AD1SOFTWARELEU A:96 , ILE A:127 , LEU A:131 , ALA A:184 , LEU A:192 , OLA A:2412 , OLC A:2429binding site for residue OLA A 2409
11AD2SOFTWAREOLB A:2422binding site for residue OLA A 2410
12AD3SOFTWARESER A:7 , LEU A:19 , TRP A:29 , PHE A:286binding site for residue OLA A 2411
13AD4SOFTWAREGLY A:123 , VAL A:130 , OLA A:2409 , HOH A:2503binding site for residue OLA A 2412
14AD5SOFTWARETRP A:32 , LEU A:198 , PHE A:201 , LYS A:233 , OLB A:2426binding site for residue OLA A 2413
15AD6SOFTWAREILE A:3 , SER A:7 , VAL A:18 , OLB A:2427binding site for residue OLA A 2414
16AD7SOFTWAREGLY A:76binding site for residue OLA A 2416
17AD8SOFTWARELEU A:244binding site for residue OLA A 2417
18AD9SOFTWAREVAL A:12 , THR A:279 , VAL A:283 , OLA A:2420binding site for residue OLA A 2418
19AE1SOFTWARELEU A:194 , ALA A:243 , CLR A:2404binding site for residue OLA A 2419
20AE2SOFTWAREILE A:287 , OLA A:2418binding site for residue OLA A 2420
21AE3SOFTWARELEU A:187 , PHE A:258 , CLR A:2402 , CLR A:2404 , OLC A:2428 , HOH A:2563binding site for residue OLB A 2421
22AE4SOFTWAREPHE A:255 , CYS A:262 , CLR A:2403 , OLA A:2405 , OLA A:2410 , OLB A:2424binding site for residue OLB A 2422
23AE5SOFTWARELEU A:137 , OLC A:2429 , HOH A:2567binding site for residue OLB A 2423
24AE6SOFTWAREVAL A:57 , THR A:65 , PHE A:70 , CYS A:71 , CLR A:2402 , CLR A:2404 , OLA A:2405 , OLB A:2422binding site for residue OLB A 2424
25AE7SOFTWARETYR A:43 , LEU A:58 , GLY A:118binding site for residue OLB A 2425
26AE8SOFTWAREGLN A:38 , TYR A:43 , VAL A:46 , ARG A:205 , OLA A:2413binding site for residue OLB A 2426
27AE9SOFTWARESER A:6 , THR A:68 , OLA A:2414binding site for residue OLB A 2427
28AF1SOFTWARETYR A:179 , PHE A:257 , PHE A:258 , OLB A:2421 , OLC A:2429binding site for residue OLC A 2428
29AF2SOFTWAREHIS A:75 , MET A:140 , LEU A:141 , GLY A:142 , ASN A:144 , TYR A:179 , ALA A:184 , OLA A:2409 , OLB A:2423 , OLC A:2428 , HOH A:2567binding site for residue OLC A 2429

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:71 -A:159
2A:74 -A:146
3A:77 -A:166
4A:259 -A:262

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IUB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IUB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IUB)

(-) Exons   (0, 0)

(no "Exon" information available for 5IUB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh.....eee.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5iub A   -1 GAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKIIRS  305
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208|     1010      1020      1030      1040 ||   1065      1075      1085      1095      1105||     227       237       247       257       267       277       287       297        
                                                                                                                                                                                                                                           208|                                     1042|                                            1106|                                                                                      
                                                                                                                                                                                                                                           1001                                      1058                                              219                                                                                      

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IUB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IUB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IUB)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AA2AR_HUMAN | P292741mmh 1upe 2ydo 2ydv 3eml 3pwh 3qak 3rey 3rfm 3uza 3uzc 3vg9 3vga 4eiy 4ug2 4uhr 5g53 5iu4 5iu7 5iu8 5iua 5jtb 5k2a 5k2b 5k2c 5k2d 5uig 5uvi
        C562_ECOLX | P0ABE71apc 1lm3 1m6t 1qpu 1qq3 256b 2bc5 2qla 3c62 3c63 3de8 3de9 3foo 3fop 3hni 3hnj 3hnk 3hnl 3iq5 3iq6 3l1m 3m15 3m4b 3m4c 3m79 3nmi 3nmj 3nmk 3tol 3tom 3u8p 4ea3 4eiy 4iaq 4iar 4ib4 4je9 4jea 4jeb 4jkv 4l6r 4n6h 4nc3 4ntj 4o9r 4or2 4pxz 4py0 4qim 4qin 4rwa 4rwd 4u9d 4u9e 4yay 4z34 4z35 4z36 4zud 5awi 5bu7 5dhg 5dhh 5iu4 5iu7 5iu8 5iua 5jtb 5k2a 5k2b 5k2c 5k2d 5l31 5l32 5l7d 5l7i 5ndd 5ndz 5nj6 5tvn 5uen 5uig 5unf 5ung 5unh 5uvi

(-) Related Entries Specified in the PDB File

5iu4 CONTAINS SAME PROTEIN WITH DIFFERENT LIGANDS
5iu7 CONTAINS SAME PROTEIN WITH DIFFERENT LIGANDS
5iu8 CONTAINS SAME PROTEIN WITH DIFFERENT LIGANDS
5iua CONTAINS SAME PROTEIN WITH DIFFERENT LIGANDS