5C7K - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE BG505 SOSIP GP140 HIV-1 ENV TRIMER BOUND TO BROADLY NEUTRALIZING ANTIBODIES PGT128 AND 8ANC195

Authors :   L. Kong, R. L. Stanfield, I. A. Wilson

Date :   24 Jun 15 (Deposition) - 07 Oct 15 (Release) - 23 Dec 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   4.60

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F  (3x)

Keywords :   Hiv-1, Sosip, Pgt128, 8Anc195, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Kong, A. Torrents De La Pena, M. C. Deller, F. Garces, K. Sliepen, Y. Hua, R. L. Stanfield, R. W. Sanders, I. A. Wilson
Complete Epitopes For Vaccine Design Derived From A Crystal Structure Of The Broadly Neutralizing Antibodies Pgt128 And 8Anc195 In Complex With An Hiv-1 Env Trimer.
Acta Crystallogr. , Sect. D V. 71 2099 2015
PubMed-ID: 26457433 | Reference-DOI: 10.1107/S1399004715013917

Molecule 1 - ANTIBODY FAB PGT128 HEAVY CHAIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293
	Expression System Taxid	:	9606
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 2 - ANTIBODY FAB PGT128 LIGHT CHAIN
	Chains	:	B
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Gene	:	IGLC-RG
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 3 - ENVELOPE GLYCOPROTEIN GP120
	Chains	:	C
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Fragment	:	UNP RESIDUES 30-507
	Gene	:	ENV
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676

Molecule 4 - ENVELOPE GLYCOPROTEIN GP41
	Chains	:	D
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293
	Expression System Taxid	:	9606
	Gene	:	ENV
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676

Molecule 5 - ANTIBODY FAB 8ANC195 HEAVY CHAIN
	Chains	:	E
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293
	Expression System Taxid	:	9606
	Gene	:	IGHG1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 6 - ANTIBODY FAB 8ANC195 LIGHT CHAIN
	Chains	:	F
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293
	Expression System Taxid	:	9606
	Gene	:	IGKC
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (3x)	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 83)

No.	Name	Count	Type	Full Name
1	BMA	10	Ligand/Ion	BETA-D-MANNOSE
2	MAN	38	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	34	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 249)

No.	Name	Count	Type	Full Name
1	BMA	30	Ligand/Ion	BETA-D-MANNOSE
2	MAN	114	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	102	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG C:360 , ARG C:469	binding site for residue SO4 C 656
02	AC2	SOFTWARE	ASN C:88 , GLY D:527 , THR D:529 , THR D:627	binding site for Mono-Saccharide NAG C 601 bound to ASN C 88
03	AC3	SOFTWARE	ASN C:133 , ARG C:151 , ARG C:178	binding site for Mono-Saccharide NAG C 621 bound to ASN C 133
04	AC4	SOFTWARE	ARG A:100A , ASN C:156 , SER C:158 , TYR C:173 , ASP C:321A	binding site for Poly-Saccharide residues NAG C 602 through NAG C 603 bound to ASN C 156
05	AC5	SOFTWARE	THR C:128 , GLN C:130 , ASN C:160 , LYS C:169	binding site for Mono-Saccharide NAG C 604 bound to ASN C 160
06	AC6	SOFTWARE	VAL C:182 , ARG C:192 , ASN C:197	binding site for Poly-Saccharide residues NAG C 605 through NAG C 606 bound to ASN C 197
07	AC7	SOFTWARE	ASN C:234 , ILE C:277 , HIS C:352 , THR E:19 , TRP E:55 , SER E:57 , SER E:58 , ALA E:59 , PHE E:63 , ARG E:64 , ARG E:66 , VAL E:67 , LEU E:68 , SER E:70 , ALA E:71 , VAL E:72 , ASP E:73 , ILE E:77D , SER E:78 , SER E:79 , GLU E:81 , PRO F:8 , SER F:9 , THR F:10 , GLN F:100 , LYS F:107 , PRO F:141 , GLU F:143 , LYS F:145 , GLN F:199	binding site for Poly-Saccharide residues GLY E 65 through MAN E 311 bound to ASN C 234
08	AC8	SOFTWARE	GLU C:211 , PRO C:212 , ASN C:262 , ASN C:377 , GLY C:379 , GLN C:440 , GLY C:441 , VAL C:442 , VAL C:446 , SER C:447 , NAG C:610 , NAG C:632	binding site for Poly-Saccharide residues NAG C 641 through MAN C 647 bound to ASN C 262
09	AC9	SOFTWARE	ASN C:276 , THR C:278 , ASN C:279 , GLN E:1 , HIS E:3 , VAL E:5 , GLN E:6 , TYR E:25 , GLY E:26	binding site for Poly-Saccharide residues NAG C 612 through MAN C 620 bound to ASN C 276
10	AD1	SOFTWARE	ASN C:295 , ASN C:332 , VAL C:333 , SER C:334	binding site for Poly-Saccharide residues NAG C 648 through MAN C 652 bound to ASN C 295
11	AD2	SOFTWARE	SER A:28 , ALA A:30 , HIS A:52A , ALA A:52C , SER A:52D , THR A:73 , ASN C:301 , ARG C:304 , MAN C:646	binding site for Poly-Saccharide residues NAG C 632 through MAN C 640 bound to ASN C 301
12	AD3	SOFTWARE	TYR A:52E , TRP A:52F , TRP A:56 , THR A:57 , TYR A:58 , HIS A:59 , LYS A:64 , GLY B:93 , ASN B:94 , TRP B:95 , ASP B:95A , THR C:297 , HIS C:330 , ASN C:332 , SER C:413	binding site for Poly-Saccharide residues NAG C 622 through MAN C 631 bound to ASN C 332
13	AD4	SOFTWARE	LYS C:335 , ASN C:339	binding site for Poly-Saccharide residues NAG C 660 through BMA C 662 bound to ASN C 339
14	AD5	SOFTWARE	ASN C:355 , THR F:197 , HIS F:198 , GLN F:199 , SER F:202 , SER F:203 , PRO F:204	binding site for Mono-Saccharide NAG C 607 bound to ASN C 355
15	AD6	SOFTWARE	ASN C:363 , ASN C:386 , SER C:388 , NAG C:608 , NAG C:609	binding site for Poly-Saccharide residues NAG C 653 through BMA C 655 bound to ASN C 363
16	AD7	SOFTWARE	ASN C:386 , SER C:388 , NAG C:653 , NAG C:654 , NAG C:657	binding site for Poly-Saccharide residues NAG C 608 through NAG C 609 bound to ASN C 386
17	AD8	SOFTWARE	ASN C:392 , NAG C:609	binding site for Poly-Saccharide residues NAG C 657 through BMA C 659 bound to ASN C 392
18	AD9	SOFTWARE	ASN C:262 , PRO C:291 , ASN C:448 , NAG C:641	binding site for Poly-Saccharide residues NAG C 610 through NAG C 611 bound to ASN C 448
19	AE1	SOFTWARE	ASN D:611 , SER D:613	binding site for Mono-Saccharide NAG D 709 bound to ASN D 611
20	AE2	SOFTWARE	ASN D:616 , ARG D:617 , ASN D:618	binding site for Mono-Saccharide NAG D 710 bound to ASN D 618
21	AE3	SOFTWARE	ASN D:637 , TYR F:49 , ARG F:50 , ALA F:52 , ALA F:53 , LEU F:54 , GLY F:56	binding site for Poly-Saccharide residues NAG D 701 through MAN D 708 bound to ASN D 637

Asymmetric Unit

No.	Residues
1	A:22	-	A:92
2	A:32	-	A:52B
3	A:142	-	A:208
4	B:23	-	B:88
5	B:134	-	B:194
6	C:54	-	C:74
7	C:119	-	C:205
8	C:126	-	C:196
9	C:131	-	C:157
10	C:218	-	C:247
11	C:228	-	C:239
12	C:331	-	C:418
13	C:331	-	C:385
14	C:378	-	C:445
15	C:385	-	C:418
16	C:501	-	D:605
17	D:598	-	D:604
18	E:22	-	E:92
19	E:140	-	E:196
20	F:23	-	F:88
21	F:134	-	F:194

Asymmetric Unit

No.	Residues
1	Phe A:148	-	Pro A:149
2	Glu A:150	-	Pro A:151
3	Gln B:108	-	Pro B:109
4	Tyr B:140	-	Pro B:141
5	Glu C:32	-	Asn C:33
6	Gly C:312	-	Pro C:313
7	Ser C:460	-	Thr C:461
8	Phe E:146	-	Pro E:147
9	Glu E:148	-	Pro E:149
10	Ser F:7	-	Pro F:8
11	Tyr F:94	-	Pro F:95
12	Tyr F:140	-	Pro F:141

(no "SAP(SNP)/Variant" information available for 5C7K)

(no "PROSITE Motif" information available for 5C7K)

(no "Exon" information available for 5C7K)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eee....eeeeeeee.........eeeeeee......eeeeeee.........eeee.......eeeeee....eeeeee...hhhhheeeeeeeeeee..ee....eeeeeee....eeeeee........eeee......eeeeeeeeeee.....eeee........eeeeeeee.....eeeeeeeeee........eeeeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5c7k A    2 PQLQESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  227
                                    11        21        31    ||  39        49   |||||53        63        73       82A||      90       100||||||100J|      109       119       135       145       155|||    170|      181|      192       205       215      |227
                                                            35A|               52A|||||                            82A||               100A|||||100J|                        127|                  155|||    170|      181|               201|              222|  
                                                             35B                52B||||                             82B|                100B|||||100K                         134                   157||     172       183                205               225  
                                                                                 52C|||                              82C                 100C||||||                                                  158|                                                         
                                                                                  52D||                                                   100D|||||                                                   163                                                         
                                                                                   52E|                                                    100E||||                                                                                                               
                                                                                    52F                                                     100F|||                                                                                                               
                                                                                                                                             100G||                                                                                                               
                                                                                                                                              100H|                                                                                                               
                                                                                                                                               100I

Chain B from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee......eeeeee.......eeeee.....eeeee.............eeeeee..eeeeee...hhhhheeeeeeeee...eeee...eeee.........eeeee..hhhhhh...eeeeeeeeee.....eeeeee........eee...ee.....eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5c7k B    4 LTQPPSASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP  211
                                 || 14        24  ||    36        46        56        66        76        86       95A       105 |     114       124       134       144       154       164   ||  175       185       195    || 207    
                                 9|              27|                                                               95A        106A                                                           168|                           200|        
                                 11               30                                                                                                                                          170                            203

Chain C from PDB  Type:PROTEIN  Length:450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee....eee...................................eeee....eeee....hhhhhhhhhhhhhhhhhhh....hhhhh..eeeee.......eeeeeeeee......eeeeeeeee...eee....eeee........ee...................eeeeee.......eeee..eeee..............ee.........eeee.........eeeeeeeeeeeeeeeeeee....ee.....ee.......ee...eeeeehhhhhhhhhhhhhhhhhhh.....eeee......hhhhhheeeee..eeeee.hhhh..eee..........eeeeee..ee.........ee.....eeeeeeeeeeeeeeee........eeeeee....hhhhhhhhhh.eeeeee..eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5c7k C   30 RAENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRR  504
                                    39        49        59        69        79        89        99       109       119       129     ||152       162       172       182  ||   194       204       214       224       234       244       254       264       274       284       294       304    || 316     | 325       335       345       355       365       375       385       395     ||414       424       434       444       454       464       474       484       494       504
                                                                                                                                   135||                                185|                                                                                                                      309|      321A                                                                             401|                                                                                             
                                                                                                                                    141|                                 188                                                                                                                       312                                                                                        411                                                                                             
                                                                                                                                     150

Chain D from PDB  Type:PROTEIN  Length:122
                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhh.............hhhhhhhhhhhhhhhhhhhhh......eeeeeee.................hhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                5c7k D  522 FLGAAGSTMGAASMTLTVQARNLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   531       541 ||    572       582       592       602       612       622       632       642       652       662  
                                               543|                                                                                                   
                                                565

Chain E from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee.......eeeeeeee.....eeeeeeee..eeee.......eeeeee........eeeeee...hhhhh.eeeeeeee........ee..ee...ee...eeeee........eeeee......eeeeeeeeee.....eeee.hhh....eeeeeeee.....eeeeeeeee......eeeee........eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5c7k E    1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDKWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSTQTYICNVNHKPSNTKVDKKVEPK  214
                                    10        20        30     |  39        49  ||    60        70       77C|     ||83        93      100C|||||||101       111       121      |136       146       156       166       176       186|      200       210    
                                                             35A               52|                     77A|||   82A||               100A|||||100J||                         128|                                                 186|                       
                                                                                54                      77B||    82B|                100B|||||100K|                          134                                                  191                       
                                                                                                         77C|     82C                 100C|||||100L                                                                                                         
                                                                                                          77D                          100D|||||                                                                                                            
                                                                                                                                        100E||||                                                                                                            
                                                                                                                                         100F|||                                                                                                            
                                                                                                                                          100G||                                                                                                            
                                                                                                                                           100H|                                                                                                            
                                                                                                                                            100I

Chain F from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee........eeee..hhhhhh..eeeeeeeeeee.....eeeeee........eeeee.........eeeeeeeeeehhhhhh...eeeeee.......eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5c7k F    1 DIQMTQSPSTLSASIGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFSGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR  211
                                    10        20        30|       39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209  
                                                        30A

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5C7K)

(no "CATH Domain" information available for 5C7K)

(no "Pfam Domain" information available for 5C7K)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		BMA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Gln B:108 - Pro B:109	[ RasMol ]
		Glu A:150 - Pro A:151	[ RasMol ]
		Glu C:32 - Asn C:33	[ RasMol ]
		Glu E:148 - Pro E:149	[ RasMol ]
		Gly C:312 - Pro C:313	[ RasMol ]
		Phe A:148 - Pro A:149	[ RasMol ]
		Phe E:146 - Pro E:147	[ RasMol ]
		Ser C:460 - Thr C:461	[ RasMol ]
		Ser F:7 - Pro F:8	[ RasMol ]
		Tyr B:140 - Pro B:141	[ RasMol ]
		Tyr F:140 - Pro F:141	[ RasMol ]
		Tyr F:94 - Pro F:95	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Access by PDB/NDB ID
	5c7k
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
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Access by UniProt ID/Accession number
	IGHG1_HUMAN \| P01857
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
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	IGKC_HUMAN \| P01834
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		Protein-protein Interaction	:	DIP
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	Q2N0S6_9HIV1 \| Q2N0S6
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		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	S6B291_HUMAN \| S6B291
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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		Interatomic Contacts of Structural Units	:	CSU
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	IGHG1_HUMAN \| P01857
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	IGKC_HUMAN \| P01834
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q2N0S6_9HIV1 \| Q2N0S6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	S6B291_HUMAN \| S6B291
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Related Entries Specified in the PDB File" available for 5C7K)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 83)

Sites (21, 21)

SS Bonds (21, 21)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (40, 59)

Visualization

Interactive Views

Still Images

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File