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(-) Description

Title :  MURINE 6A6 FAB IN COMPLEX WITH HUMANIZED ANTI-TISSUE FACTOR D3H44 FAB
 
Authors :  C. Eigenbrot, Y. G. Meng, R. Krishnamurthy, M. T. Lipari, L. Presta, B. D T. Wong, P. Moran, S. Bullens, D. Kirchhofer
Date :  27 May 03  (Deposition) - 26 Aug 03  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  H,I,L,M,W,X,Y,Z
Biol. Unit 1:  H,L,W,X  (1x)
Biol. Unit 2:  I,M,Y,Z  (1x)
Keywords :  Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Eigenbrot, Y. G. Meng, R. Krishnamurthy, M. T. Lipari, L. Presta, B. Devaux, T. Wong, P. Moran, S. Bullens, D. Kirchhofer
Structural Insight Into How An Anti-Idiotypic Antibody Against D3H44 (Anti-Tissue Factor Antibody) Restores Normal Coagulation.
J. Mol. Biol. V. 331 433 2003
PubMed-ID: 12888350  |  Reference-DOI: 10.1016/S0022-2836(03)00735-6

(-) Compounds

Molecule 1 - HUMANIZED ANTIBODY D3H44
    Chains: H, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: ANTIGEN-BINDING FRAGMENT
    Organism Scientific: MUS MUSCULUS, HOMO SAPIENS
    Organism Taxid: 10090, 9606
 
Molecule 2 - HUMANIZED ANTIBODY D3H44
    Chains: L, M
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: ANTIGEN-BINDING FRAGMENT
    Organism Scientific: MUS MUSCULUS, HOMO SAPIENS
    Organism Taxid: 10090, 9606
 
Molecule 3 - MURINE ANTIBODY 6A6 FAB FRAGMENT
    Chains: W, Y
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 4 - MURINE ANTIBODY 6A6 FAB FRAGMENT
    Chains: X, Z
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : HILMWXYZ
Biological Unit 1 (1x): H L WX  
Biological Unit 2 (1x):  I M  YZ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1PG7)

(-) Sites  (0, 0)

(no "Site" information available for 1PG7)

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1H:22 -H:92
2H:140 -H:196
3I:22 -I:92
4I:140 -I:196
5L:23 -L:88
6L:134 -L:194
7M:23 -M:88
8M:134 -M:194
9W:23 -W:88
10W:135 -W:192
11X:22 -X:92
12X:140 -X:195
13Y:23 -Y:88
14Y:135 -Y:192
15Z:22 -Z:92
16Z:140 -Z:195

(-) Cis Peptide Bonds  (18, 18)

Asymmetric Unit
No.Residues
1Phe H:146 -Pro H:147
2Glu H:148 -Pro H:149
3Phe I:146 -Pro I:147
4Glu I:148 -Pro I:149
5Ser L:7 -Pro L:8
6Ser L:94 -Pro L:95
7Tyr L:140 -Pro L:141
8Ser M:7 -Pro M:8
9Ser M:94 -Pro M:95
10Tyr M:140 -Pro M:141
11Tyr W:141 -Pro W:142
12Phe X:146 -Pro X:147
13Glu X:148 -Pro X:149
14Trp X:188 -Pro X:189
15Tyr Y:141 -Pro Y:142
16Phe Z:146 -Pro Z:147
17Glu Z:148 -Pro Z:149
18Trp Z:188 -Pro Z:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PG7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PG7)

(-) Exons   (0, 0)

(no "Exon" information available for 1PG7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains d1pg7h1 H:1-117 Immunoglobulin heavy chain variable domain, VH                                                           d1pg7h2 H:118-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma              SCOP domains
               CATH domains 1pg7H01 H:1-113 Immunoglobulins                                                                                      1pg7H02 H:114-212 Immunoglobulins                                                              - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee..eeeee...eeeee........eeeee......eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pg7 H    1 EVQLVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARDTAAYFDYWGQGTLVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96       106       116       126 ||    140       150       160       170       180       190       200       210   
                                                                              52A                            82A||                                           128|                                                                                
                                                                                                              82B|                                            133                                                                                
                                                                                                               82C                                                                                                                               


Chain I from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains d1pg7i1 I:1-117 Immunoglobulin heavy chain variable domain, VH                                                           d1pg7i2 I:118-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma              SCOP domains
               CATH domains 1pg7I01 I:1-113 Immunoglobulins                                                                                      1pg7I02 I:114-212 Immunoglobulins                                                              - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeeee..eeeee...eeeee........eeeee......eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pg7 I    1 EVQLVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARDTAAYFDYWGQGTLVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96       106       116       126 ||    140       150       160       170       180       190       200       210   
                                                                              52A                            82A||                                           128|                                                                                
                                                                                                              82B|                                            133                                                                                
                                                                                                               82C                                                                                                                               


Chain L from PDB  Type:PROTEIN  Length:213
 aligned with Q7Z3Y4_HUMAN | Q7Z3Y4 from UniProtKB/TrEMBL  Length:236

    Alignment length:213
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232   
        Q7Z3Y4_HUMAN     23 DIQMTQSPSSLSASVGDTVTITCRASQDISNYLAWFQQKPGKAPKSLIYGASSLQSGVQSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYKSYPVTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  235
               SCOP domains d1pg7l1 L:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1pg7l2 L:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1pg7L01 L:1-108 Immunoglobulins                                                                             1pg7L02 L:109-211 Immunoglobulins                                                                      -- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pg7 L    1 DIQMTQSPSSLSASVGDRVTITCRASRDIKSYLNWYQQKPGKAPKVLIYYATSLAEGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCLQHGESPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain M from PDB  Type:PROTEIN  Length:213
 aligned with Q7Z3Y4_HUMAN | Q7Z3Y4 from UniProtKB/TrEMBL  Length:236

    Alignment length:213
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232   
        Q7Z3Y4_HUMAN     23 DIQMTQSPSSLSASVGDTVTITCRASQDISNYLAWFQQKPGKAPKSLIYGASSLQSGVQSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYKSYPVTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  235
               SCOP domains d1pg7m1 M:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1pg7m2 M:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1pg7M01 M:1-108 Immunoglobulins                                                                             1pg7M02 M:109-211 Immunoglobulins                                                                      -- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pg7 M    1 DIQMTQSPSSLSASVGDRVTITCRASRDIKSYLNWYQQKPGKAPKVLIYYATSLAEGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCLQHGESPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain W from PDB  Type:PROTEIN  Length:210
 aligned with G0YP42_MOUSE | G0YP42 from UniProtKB/TrEMBL  Length:234

    Alignment length:210
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229
        G0YP42_MOUSE     20 QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRVSGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS  229
               SCOP domains d1pg7w1 W:1-108 Immunoglobulin light chain lambda variable domain, VL-lambda                                  d1pg7w2 W:109-206 Immunoglobulin light chain lambda constant domain, CL-lambda                       SCOP domains
               CATH domains 1pg7W01 W:1-108 Immunoglobulins                                                                               1pg7W02 W:109-206 Immunoglobulins                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeee....eee...eeeee........eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeeeehhhhhhh..eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1pg7 W    1 QAVVTQESALTSSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGVIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVNLFPPSSEELKTKKATLVCTITEFYPGAVRVDWKADGTPVTQGDETTQPSKQSNNKYMASSYLTLTAEAWESHSSYSCHVTHEGQSVEKSLS  206
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168||     176       186       196       206
                                    9|              27A||                                                                                                                                          168A|                                      
                                    11               27B|                                                                                                                                           168B                                      
                                                      27C                                                                                                                                                                                     


Chain X from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains d1pg7x1 X:1-113 Immunoglobulin heavy chain variable domain, VH                                                          d1pg7x2 X:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1pg7X01 X:1-113 Immunoglobulins                                                                                         1pg7X02 X:114-212 Immunoglobulins                                                                  - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee..............eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pg7 X    1 EVQLQQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVYYCAREDFRYHYSMDYWGQGTSVTVSSAKTTPPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSVTCNVAHPASSTKVDKKIVPK  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||103       113       123       133       143       153       163       173       183       193       203       213
                                                                              52A                            82A||               100A||                                                                                                                 
                                                                                                              82B|                100B|                                                                                                                 
                                                                                                               82C                 100C                                                                                                                 


Chain Y from PDB  Type:PROTEIN  Length:210
 aligned with G0YP42_MOUSE | G0YP42 from UniProtKB/TrEMBL  Length:234

    Alignment length:210
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229
        G0YP42_MOUSE     20 QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRVSGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS  229
               SCOP domains d1pg7y1 Y:1-108 Immunoglobulin light chain lambda variable domain, VL-lambda                                  d1pg7y2 Y:109-206 Immunoglobulin light chain lambda constant domain, CL-lambda                       SCOP domains
               CATH domains 1pg7Y01 Y:1-108 Immunoglobulins                                                                               1pg7Y02 Y:109-206 Immunoglobulins                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeee....eee...eeeee........eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeeeehhhhhhh..eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1pg7 Y    1 QAVVTQESALTSSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGVIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVNLFPPSSEELKTKKATLVCTITEFYPGAVRVDWKADGTPVTQGDETTQPSKQSNNKYMASSYLTLTAEAWESHSSYSCHVTHEGQSVEKSLS  206
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168||     176       186       196       206
                                    9|              27A||                                                                                                                                          168A|                                      
                                    11               27B|                                                                                                                                           168B                                      
                                                      27C                                                                                                                                                                                     


Chain Z from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains d1pg7z1 Z:1-113 Immunoglobulin heavy chain variable domain, VH                                                          d1pg7z2 Z:114-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                      SCOP domains
               CATH domains 1pg7Z01 Z:1-113 Immunoglobulins                                                                                         1pg7Z02 Z:114-212 Immunoglobulins                                                                  - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee..............eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pg7 Z    1 EVQLQQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVYYCAREDFRYHYSMDYWGQGTSVTVSSAKTTPPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSVTCNVAHPASSTKVDKKIVPK  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||103       113       123       133       143       153       163       173       183       193       203       213
                                                                              52A                            82A||               100A||                                                                                                                 
                                                                                                              82B|                100B|                                                                                                                 
                                                                                                               82C                 100C
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (8, 16)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 16)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Immunoglobulins (2282)
(-)
Synthetic construct. Organism_taxid: 32630. (1)
1a1pg7L02L:109-211
1b1pg7M02M:109-211
1c1pg7X01X:1-113
1d1pg7Z01Z:1-113
1e1pg7W02W:109-206
1f1pg7Y02Y:109-206
1g1pg7H01H:1-113
1h1pg7I01I:1-113
1i1pg7L01L:1-108
1j1pg7M01M:1-108
1k1pg7X02X:114-212
1l1pg7Z02Z:114-212
1m1pg7H02H:114-212
1n1pg7I02I:114-212
1o1pg7W01W:1-108
1p1pg7Y01Y:1-108

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1PG7)

(-) Gene Ontology  (20, 32)

Asymmetric Unit(hide GO term definitions)
Chain L,M   (Q7Z3Y4_HUMAN | Q7Z3Y4)

Chain W,Y   (G0YP42_MOUSE | G0YP42)

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Asymmetric Unit
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  Cis Peptide Bonds
    Glu H:148 - Pro H:149   [ RasMol ]  
    Glu I:148 - Pro I:149   [ RasMol ]  
    Glu X:148 - Pro X:149   [ RasMol ]  
    Glu Z:148 - Pro Z:149   [ RasMol ]  
    Phe H:146 - Pro H:147   [ RasMol ]  
    Phe I:146 - Pro I:147   [ RasMol ]  
    Phe X:146 - Pro X:147   [ RasMol ]  
    Phe Z:146 - Pro Z:147   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
    Ser L:94 - Pro L:95   [ RasMol ]  
    Ser M:7 - Pro M:8   [ RasMol ]  
    Ser M:94 - Pro M:95   [ RasMol ]  
    Trp X:188 - Pro X:189   [ RasMol ]  
    Trp Z:188 - Pro Z:189   [ RasMol ]  
    Tyr L:140 - Pro L:141   [ RasMol ]  
    Tyr M:140 - Pro M:141   [ RasMol ]  
    Tyr W:141 - Pro W:142   [ RasMol ]  
    Tyr Y:141 - Pro Y:142   [ RasMol ]  
 
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  1pg7
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    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
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Access by UniProt ID/Accession number
  G0YP42_MOUSE | G0YP42
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  GCAA_MOUSE | P01863
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  IGHG1_HUMAN | P01857
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q7Z3Y4_HUMAN | Q7Z3Y4
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
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    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
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Access by UniProt ID/Accession number
  G0YP42_MOUSE | G0YP42
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  GCAA_MOUSE | P01863
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  IGHG1_HUMAN | P01857
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q7Z3Y4_HUMAN | Q7Z3Y4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GCAA_MOUSE | P01863: 1dqm 1dqq 1ehl 1fe8 1ggi 1igt 1keg 1kn2 1kn4 1kno 1mh5 1mnu 1mpa 1ob1 1uyw 1yec 1yef 1yeg 1yeh 1yei 1yej 1yek 2ipu 2mpa 2r0w 2r0z 2r29 2r69 2r6p 2vl5 2zch 2zck 2zcl 3bgf 3oz9 3zo0 4f37 5vaa
        IGHG1_HUMAN | P01857: 1aj7 1aqk 1axs 1bey 1d5b 1d5i 1d6v 1dfb 1dn2 1e4k 1fc1 1fc2 1fcc 1gaf 1h3t 1h3u 1h3v 1h3w 1h3x 1h3y 1hkl 1hzh 1i7z 1l6x 1n7m 1op3 1oqo 1oqx 1t83 1t89 1vge 2dts 2gj7 2i5y 2iwg 2j6e 2jb5 2jb6 2o5x 2o5y 2o5z 2osl 2qad 2ql1 2qqk 2qql 2qqn 2qr0 2r56 2rcj 2rcs 2vxq 2wah 3agv 3ave 3ay4 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3c2s 3cfj 3cfk 3csy 3d0l 3d0v 3d6g 3d85 3dj9 3dnk 3do3 3dro 3drq 3dvg 3dvn 3eyf 3eyo 3eyq 3fjt 3mcl 3o11 3ry6 3s7g 3sgj 3sgk 3tv3 3twc 3tyg 3u0w 3u7w 3u7y 3v7m 3v8c 3v95 3wjj 3wjl 3wkn 3wn5 4acp 4b7i 4bm7 4bsv 4bsw 4byh 4cdh 4d9q 4d9r 4dag 4dz8 4eow 4hix 4j12 4ku1 4lld 4llm 4llq 4n0u 4nqs 4nqt 4nqu 4nwt 4nwu 4o4y 4o51 4q6y 4q74 4q7d 4w4n 4w4o 4wi2 4wi3 4wi4 4wi5 4wi6 4wi7 4wi8 4wi9 4x4m 4x98 4x99 4xmp 4xny 4xnz 4xxd 4zne 5bw7 5c7k 5d4q 5d6d 5di8 5dj0 5dj2 5dj6 5dj8 5dja 5djc 5djd 5djx 5djy 5djz 5dk0 5dk2 5dvk 5dvl 5dvm 5dvn 5dvo 5gsq 5hsf 5hy9 5hye 5hyf 5hyi 5iq7 5iq9 5iw3 5iw6 5jih 5jii 5jik 5k33 5k8d 5kwg 5m3v 5v43 5v4e
UniProtKB/TrEMBL
        G0YP42_MOUSE | G0YP42: 1etz 1ngp 1ngq
        Q7Z3Y4_HUMAN | Q7Z3Y4: 1axs 1l7i 1s78 2jix 4ogx 4ogy 4pub

(-) Related Entries Specified in the PDB File

1jps D3H44-FAB/TISSUE FACTOR COMPLEX
1jpt D3H44-FAB