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(-) Description

Title :  CRYSTAL STRUCTURE OF HIV-1 BG505 SOSIP.664 PREFUSION ENV TRIMER IN COMPLEX WITH V3 LOOP-TARGETING ANTIBODY PGT122 FAB AND FUSION PEPTIDE-TARGETING ANTIBODY VRC34.01 FAB
 
Authors :  K. Xu, T. Zhou, P. D. Kwong
Date :  18 Feb 16  (Deposition) - 25 May 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,E,F,I,J  (3x)
Biol. Unit 2:  C,D,G,H,K,L  (3x)
Keywords :  Hiv-1, Envelope, Trimer, Fusion Peptide, Antibody, Neutralizing, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Kong, K. Xu, T. Zhou, P. Acharya, T. Lemmin, K. Liu, G. Ozorowski, C. Soto, J. D. Taft, R. T. Bailer, E. M. Cale, L. Chen, C. W. Choi, G. Y. Chuang, N. A. Doria-Rose, A. Druz, I. S. Georgiev, J. Gorman, J. Huang, M. G. Joyce, M. K. Louder, X. Ma, K. Mckee, S. O'Dell, M. Pancera, Y. Yang, S. C. Blanchard, W. Mothes, D. R. Burton, W. C. Koff M. Connors, A. B. Ward, P. D. Kwong, J. R. Mascola
Fusion Peptide Of Hiv-1 As A Site Of Vulnerability To Neutralizing Antibody.
Science V. 352 828 2016
PubMed-ID: 27174988  |  Reference-DOI: 10.1126/SCIENCE.AAE0474

(-) Compounds

Molecule 1 - BG505 SOSIP.664 GP120
    Chains: A, C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Synonym: ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 13-1 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 18 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 19 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 21 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 25 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 6 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 8 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 9 ENV POLYPROTEIN
 
Molecule 2 - BG505 SOSIP.664 GP41
    Chains: B, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Synonym: ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 13-1 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 18 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 19 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 21 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 25 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 6 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 8 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 9 ENV POLYPROTEIN
 
Molecule 3 - PGT122 FAB LIGHT CHAIN
    Chains: L, J
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 4 - VRC34.01 FAB HEAVY CHAIN
    Chains: E, G
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 5 - VRC34.01 FAB LIGHT CHAIN
    Chains: F, H
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 6 - PGT122 FAB HEAVY CHAIN
    Chains: I, K
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (3x): AB  EF  IJ  
Biological Unit 2 (3x):   CD  GH  KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 116)

Asymmetric Unit (3, 116)
No.NameCountTypeFull Name
1BMA13Ligand/IonBETA-D-MANNOSE
2MAN33Ligand/IonALPHA-D-MANNOSE
3NAG70Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 180)
No.NameCountTypeFull Name
1BMA21Ligand/IonBETA-D-MANNOSE
2MAN51Ligand/IonALPHA-D-MANNOSE
3NAG108Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 168)
No.NameCountTypeFull Name
1BMA18Ligand/IonBETA-D-MANNOSE
2MAN48Ligand/IonALPHA-D-MANNOSE
3NAG102Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (43, 43)

Asymmetric Unit (43, 43)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:88 , SER B:528 , TYR E:98 , ASN F:31 , TYR F:50 , ARG H:30binding site for Poly-Saccharide residues NAG A 901 through MAN A 907 bound to ASN A 88
02AC2SOFTWAREASN A:133 , ASP A:140 , LYS A:155 , LYS A:189binding site for Mono-Saccharide NAG A 908 bound to ASN A 133
03AC3SOFTWAREASN A:137 , TYR I:33 , ASN I:58 , HIS I:97 , GLY I:98 , ARG I:100 , ILE I:100A , TRP I:100J , PHE I:100K , THR I:100Lbinding site for Poly-Saccharide residues ARG I 99 through MAN I 304 bound to ASN A 137
04AC4SOFTWARETHR A:135 , ASN A:156 , TYR A:173binding site for Poly-Saccharide residues NAG A 909 through MAN A 913 bound to ASN A 156
05AC5SOFTWARETHR A:128 , GLN A:130 , ASN A:160 , LYS A:169 , LYS A:171binding site for Poly-Saccharide residues NAG A 914 through NAG A 915 bound to ASN A 160
06AC6SOFTWAREARG A:192 , ASN A:197 , ARG A:308binding site for Poly-Saccharide residues NAG A 916 through NAG A 917 bound to ASN A 197
07AC7SOFTWAREASN A:234 , THR A:236 , SER A:274binding site for Poly-Saccharide residues NAG A 918 through NAG A 919 bound to ASN A 234
08AC8SOFTWAREASN A:276 , THR A:278binding site for Mono-Saccharide NAG A 926 bound to ASN A 276
09AC9SOFTWAREASN A:295 , SER A:334 , SER A:413binding site for Poly-Saccharide residues NAG A 927 through BMA A 929 bound to ASN A 295
10AD1SOFTWAREASN A:301 , ILE A:323binding site for Poly-Saccharide residues NAG A 930 through NAG A 931 bound to ASN A 301
11AD2SOFTWARETHR A:297 , HIS A:330 , ASN A:332 , ASP A:412 , THR A:415 , ARG I:100 , ILE I:100A , GLY I:100C , VAL I:100D , ASN J:50 , ASN J:51 , ASN J:52 , PRO J:66 , GLY J:67binding site for Poly-Saccharide residues NAG A 932 through MAN A 941 bound to ASN A 332
12AD3SOFTWAREASN A:339binding site for Mono-Saccharide NAG A 952 bound to ASN A 339
13AD4SOFTWAREASN A:355binding site for Mono-Saccharide NAG A 942 bound to ASN A 355
14AD5SOFTWAREASN A:386 , SER A:388 , NAG A:943 , NAG A:944binding site for Poly-Saccharide residues NAG A 945 through NAG A 946 bound to ASN A 386
15AD6SOFTWAREASN A:392 , NAG A:943binding site for Poly-Saccharide residues NAG A 947 through NAG A 948 bound to ASN A 392
16AD7SOFTWAREASN A:262 , PRO A:291 , ASN A:448 , NAG A:920binding site for Poly-Saccharide residues NAG A 949 through BMA A 951 bound to ASN A 448
17AD8SOFTWAREASN B:611 , SER B:613binding site for Mono-Saccharide NAG B 901 bound to ASN B 611
18AD9SOFTWAREASN B:618binding site for Mono-Saccharide NAG B 902 bound to ASN B 618
19AE1SOFTWAREASN B:637binding site for Mono-Saccharide NAG B 903 bound to ASN B 637
20AE2SOFTWAREGLU C:87 , ASN C:88 , SER D:528 , GLN F:27 , TYR G:98 , ASN H:31 , TYR H:50 , SER H:67binding site for Poly-Saccharide residues NAG C 901 through MAN C 907 bound to ASN C 88
21AE3SOFTWAREASN C:133 , ASP C:140binding site for Mono-Saccharide NAG C 908 bound to ASN C 133
22AE4SOFTWAREASN C:137 , PHE K:100K , ASP L:92 , THR L:95Bbinding site for Mono-Saccharide NAG C 909 bound to ASN C 137
23AE5SOFTWARETHR C:135 , ASN C:156 , SER C:158 , TYR C:173binding site for Poly-Saccharide residues NAG C 910 through MAN C 914 bound to ASN C 156
24AE6SOFTWARETHR C:128 , GLN C:130 , ASN C:160 , LYS C:169 , LYS C:171binding site for Poly-Saccharide residues NAG C 915 through NAG C 916 bound to ASN C 160
25AE7SOFTWAREVAL C:182 , ARG C:192 , ASN C:197 , ARG C:308binding site for Poly-Saccharide residues NAG C 917 through NAG C 918 bound to ASN C 197
26AE8SOFTWAREASN C:234 , THR C:236 , SER C:274 , ILE C:277binding site for Poly-Saccharide residues NAG C 919 through NAG C 920 bound to ASN C 234
27AE9SOFTWARELYS C:65 , SER C:209 , GLU C:211 , ASN C:262 , ASN C:377 , GLY C:379 , GLN C:440 , VAL C:446 , SER C:447 , NAG C:950binding site for Poly-Saccharide residues NAG C 921 through MAN C 926 bound to ASN C 262
28AF1SOFTWAREASN C:276 , THR C:278binding site for Mono-Saccharide NAG C 927 bound to ASN C 276
29AF2SOFTWAREASN C:295 , SER C:334 , SER C:413binding site for Poly-Saccharide residues NAG C 928 through NAG C 929 bound to ASN C 295
30AF3SOFTWAREASN C:301 , ILE C:323binding site for Poly-Saccharide residues NAG C 930 through NAG C 931 bound to ASN C 301
31AF4SOFTWARETHR C:297 , ARG C:327 , HIS C:330 , ASN C:332 , THR C:415 , ARG K:100 , ILE K:100A , GLY K:100C , VAL K:100D , SER L:30 , ASN L:50 , ASN L:51 , PRO L:66 , GLY L:67 , SER L:67Abinding site for Poly-Saccharide residues NAG C 932 through MAN C 941 bound to ASN C 332
32AF5SOFTWAREASN C:339binding site for Mono-Saccharide NAG C 953 bound to ASN C 339
33AF6SOFTWAREASN C:355binding site for Mono-Saccharide NAG C 942 bound to ASN C 355
34AF7SOFTWAREASN C:363 , SER C:364 , NAG C:945 , NAG C:946binding site for Poly-Saccharide residues NAG C 943 through NAG C 944 bound to ASN C 363
35AF8SOFTWAREASN C:386 , SER C:388 , NAG C:943 , NAG C:944binding site for Poly-Saccharide residues NAG C 945 through NAG C 946 bound to ASN C 386
36AF9SOFTWAREASN C:392binding site for Poly-Saccharide residues NAG C 947 through BMA C 949 bound to ASN C 392
37AG1SOFTWAREASN C:262 , PRO C:291 , ASN C:448 , NAG C:921binding site for Poly-Saccharide residues NAG C 950 through BMA C 952 bound to ASN C 448
38AG2SOFTWAREASN D:611 , SER D:613binding site for Mono-Saccharide NAG D 901 bound to ASN D 611
39AG3SOFTWAREASN D:637binding site for Mono-Saccharide NAG D 902 bound to ASN D 637
40AG4SOFTWARESER I:7 , ASN I:23binding site for Mono-Saccharide NAG I 305 bound to ASN I 23
41AG5SOFTWARESER K:7 , ASN K:23binding site for Mono-Saccharide NAG K 301 bound to ASN K 23
42AG6SOFTWARELYS A:65 , SER A:209 , PRO A:212 , ASN A:262 , ASN A:377 , GLY A:379 , GLN A:440 , VAL A:446 , SER A:447 , NAG A:949binding site for Poly-Saccharide residues NAG A 920 through MAN A 925
43AG7SOFTWARELYS A:65 , SER A:209 , ASN A:363 , GLY A:379 , SER A:388 , GLN A:440 , NAG A:920 , NAG A:945 , NAG A:946 , NAG A:947binding site for Poly-Saccharide residues NAG A 943 through NAG A 944

(-) SS Bonds  (38, 38)

Asymmetric Unit
No.Residues
1A:54 -A:74
2A:119 -A:205
3A:126 -A:196
4A:131 -A:157
5A:218 -A:247
6A:228 -A:239
7A:296 -A:331
8A:378 -A:445
9A:385 -A:418
10A:501 -B:605
11B:598 -B:604
12C:54 -C:74
13C:119 -C:205
14C:126 -C:196
15C:131 -C:157
16C:218 -C:247
17C:228 -C:239
18C:296 -C:331
19C:378 -C:445
20C:385 -C:418
21C:501 -D:605
22D:598 -D:604
23E:22 -E:92
24E:140 -E:196
25F:23 -F:88
26F:134 -F:194
27G:22 -G:92
28G:140 -G:196
29H:23 -H:88
30H:134 -H:194
31I:22 -I:92
32I:138 -I:194
33J:23 -J:88
34J:135 -J:194
35K:22 -K:92
36K:138 -K:194
37L:23 -L:88
38L:135 -L:194

(-) Cis Peptide Bonds  (26, 26)

Asymmetric Unit
No.Residues
1Ile A:138 -Thr A:139
2Gly A:312 -Pro A:313
3Ser A:460 -Thr A:461
4Ile C:138 -Thr C:139
5Gly C:312 -Pro C:313
6Ser C:460 -Thr C:461
7Gln L:109 -Pro L:110
8Tyr L:141 -Pro L:142
9Phe E:146 -Pro E:147
10Glu E:148 -Pro E:149
11Ser F:7 -Pro F:8
12Tyr F:94 -Pro F:95
13Tyr F:140 -Pro F:141
14Phe G:146 -Pro G:147
15Glu G:148 -Pro G:149
16Ser H:7 -Pro H:8
17Tyr H:94 -Pro H:95
18Tyr H:140 -Pro H:141
19Phe I:144 -Pro I:145
20Glu I:146 -Pro I:147
21Gly I:188 -Thr I:189
22Gln J:109 -Pro J:110
23Tyr J:141 -Pro J:142
24Phe K:144 -Pro K:145
25Glu K:146 -Pro K:147
26Gly K:188 -Thr K:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I8H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I8H)

(-) Exons   (0, 0)

(no "Exon" information available for 5I8H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:455
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eee...........hhhhhh...................eee....eeee...hhhhhhhhhhhhhhhhhhhh....hhhhh..ee...............eeeeeee..........eeeeeee...eee.....eeee......eeee...................eeeeee.......eeee..eeee.............eee.........eeee.........eeeeeeeeeeeeeee.....eeee.......eeee..........eeeeehhhhhhhhhhhhhhhh.......eeee......hhhhheeeeee..eeeeee......eee.....eeeeeeeee.ee.......eeee.......eeeeeeeeeeeeee........eeeeee....hhhhhhh....eeeeee..eeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i8h A   31 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVG  507
                                    40        50        60        70        80        90       100       110       120       130       140||     158       168       178      |189       199       209       219       229       239       249       259       269       279       289       299       309|      321|      330       340       350       360       370       380       390       412       422       432       442       452       462       472       482       492       502     
                                                                                                                                        141|                                185|                                                                                                                       309|      321A                                                                          398|                                                                                                
                                                                                                                                         150                                 187                                                                                                                        312                                                                                     411                                                                                                


Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhh.hhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhh...hhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5i8h B  512 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   521       531       541     ||572       582       592       602       612       622       632       642       652       662  
                                                             547|                                                                                               
                                                              569                                                                                               


Chain C from PDB  Type:PROTEIN  Length:450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee....eee...........hhhhhh..................eeee....eeee...hhhhhhhhhhhhhhhhhh......hhhhh............hhhhh..eeeeeee..........eeeeeee...eee...eee......eeee...................eeeeee.......eeee..eeee.............eee.........eeee.........eeeeeeeeeeeeeee.....eeee.......eeee.........eeeeeehhhhhhhhhhhhhhhh.......eeee......hhhhhheeeee..eeeee.......eee.....eeeeeeeee.ee.......eeee.......eeeeeeeeeeeeee........eeeeee....hhhhhhh....eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5i8h C   31 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    40        50        60        70        80        90       100       110       120       130       140||     158       168       178      |192       202       212       222       232       242       252       262       272       282       292       302      |314       323       333       343       353       363       373       383       393    || 415       425       435       445       455       465       475       485       495       505
                                                                                                                                        141|                                185|                                                                                                                    309|      321A                                                                          398|                                                                                              
                                                                                                                                         150                                 190                                                                                                                     312                                                                                     411                                                                                              


Chain D from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhh.hhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhh...hhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5i8h D  512 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   521       531       541     ||572       582       592       602       612       622       632       642       652       662  
                                                             547|                                                                                               
                                                              569                                                                                               


Chain E from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeee.hhhhh...eeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i8h E    1 QEVLVQSGAEVKKPGASVKVSCRAFGYTFTGNALHWVRQAPGQGLEWLGWINPHSGDTTTSQKFQGRVYMTRDKSINTAFLDVTRLTSDDTGIYYCARDKYYGNEAVGMDVWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  214
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||101       111       121       131       141       151       161       171       181       191       201       211   
                                                                              52A                            82A||               100A||||                                                                                                                  
                                                                                                              82B|                100B|||                                                                                                                  
                                                                                                               82C                 100C||                                                                                                                  
                                                                                                                                    100D|                                                                                                                  
                                                                                                                                     100E                                                                                                                  


Chain F from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i8h F    1 DIQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPSRFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG  212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  


Chain G from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeee...hhhhheeeeeeee.hhhhh...eeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i8h G    1 QEVLVQSGAEVKKPGASVKVSCRAFGYTFTGNALHWVRQAPGQGLEWLGWINPHSGDTTTSQKFQGRVYMTRDKSINTAFLDVTRLTSDDTGIYYCARDKYYGNEAVGMDVWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  214
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||101       111       121       131       141       151       161       171       181       191       201       211   
                                                                              52A                            82A||               100A||||                                                                                                                  
                                                                                                              82B|                100B|||                                                                                                                  
                                                                                                               82C                 100C||                                                                                                                  
                                                                                                                                    100D|                                                                                                                  
                                                                                                                                     100E                                                                                                                  


Chain H from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i8h H    1 DIQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPSRFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG  212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  


Chain I from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...ee....eeeeeeeee.......eeeeee.......eeeeee.....eee.hhhh..eeeeee....eeeeeee..hhhhheeeeeeeeeeeeee........eeeeeee......eeeee........eeeee......eeeeeeeeeee.....eeee.hhh....eeee.........eeeeeeeeee.........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5i8h I    1 QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  211
                                    10        20        30        40        50        60        70        80  |||   87        97   |||100G||||||100Q|      109       119      |133       143       153       163       173       183       193       203        
                                                                                                            82A||               100A|||||100J||||||||                       126|                                                                                
                                                                                                             82B|                100B|||||100K|||||||                        131                                                                                
                                                                                                              82C                 100C|||||100L||||||                                                                                                           
                                                                                                                                   100D|||||100M|||||                                                                                                           
                                                                                                                                    100E|||| 100N||||                                                                                                           
                                                                                                                                     100F|||  100O|||                                                                                                           
                                                                                                                                      100G||   100P||                                                                                                           
                                                                                                                                       100H|    100Q|                                                                                                           
                                                                                                                                        100I     100R                                                                                                           


Chain J from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee....eeeeeeeee.......eeeee......eeee.............eee........eeeeeee..hhhhh.eeeee...............eeeee........eeeee.....hhhhh.eeeeeeeeee....eeeeeee..ee....eee..........eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5i8h J    6 APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT  210
                               ||   16        26        36        46        56        66 |||    73        83        93  |||  100       110       120       130       140       150       160       170       180       190       200       210
                               9|                                                      67A||                          95A||                                                                                                                   
                               11                                                       67B|                           95B|                                                                                                                   
                                                                                         67C                            95C                                                                                                                   


Chain K from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...ee....eeeeeeeee.......eeeeee.......eeeeee.....eee.hhhh..eeeeee....eeeeeee..hhhhheeeeeeeeeeeeee........eeeeeee......eeeee........eeeee......eeeeeeeeeee.....eeee.hhh....eeee.........eeeeeeeeee.........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5i8h K    1 QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  211
                                    10        20        30        40        50        60        70        80  |||   87        97   |||100G||||||100Q|      109       119      |133       143       153       163       173       183       193       203        
                                                                                                            82A||               100A|||||100J||||||||                       126|                                                                                
                                                                                                             82B|                100B|||||100K|||||||                        131                                                                                
                                                                                                              82C                 100C|||||100L||||||                                                                                                           
                                                                                                                                   100D|||||100M|||||                                                                                                           
                                                                                                                                    100E|||| 100N||||                                                                                                           
                                                                                                                                     100F|||  100O|||                                                                                                           
                                                                                                                                      100G||   100P||                                                                                                           
                                                                                                                                       100H|    100Q|                                                                                                           
                                                                                                                                        100I     100R                                                                                                           


Chain L from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee....eeeeeeeee.......eeeee......eeee.............eee........eeeeeee..hhhhh.eeeee...............eeeee........eeeee..hhhhhh...eeeeeeeeee....eeeeeee..ee....eee..........eeeeeeeeehhhhhh....eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5i8h L    6 APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT  210
                               ||   16        26        36        46        56        66 |||    73        83        93  |||  100       110       120       130       140       150       160       170       180       190       200       210
                               9|                                                      67A||                          95A||                                                                                                                   
                               11                                                       67B|                           95B|                                                                                                                   
                                                                                         67C                            95C
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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(no "SCOP Domain" information available for 5I8H)

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(no "CATH Domain" information available for 5I8H)

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(-) Gene Ontology  (14, 14)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q2N0S6_9HIV1 | Q2N0S6: 5v7j 5v8l 5v8m 5viy 5vj6 5w6d
UniProtKB/TrEMBL
        Q2N0S6_9HIV1 | Q2N0S6: 3j5m 4nco 4zmj 5aco 5c7k 5cez 5cjx 5d9q 5fyl 5js9 5jsa 5t3s 5t3x 5t3z 5thr 5u1f 5utf 5uty

(-) Related Entries Specified in the PDB File

5i8c RELATED STRUCTURE.
5i8e