Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  BG505 SOSIP.664 IN COMPLEX WITH BROADLY NEUTRALIZING ANTIBODIES BG1 AND 8ANC195
 
Authors :  H. Wang, P. J. Bjorkman
Date :  17 Apr 17  (Deposition) - 21 Jun 17  (Release) - 21 Jun 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  6.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Keywords :  Hiv-1 Env, Broadly Neutralizing Antibodies, Cryo-Em, Single Particle Analysis, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Wang, H. B. Gristick, L. Scharf, A. P. West, R. P. Galimidi, M. S. Seaman, N. T. Freund, M. C. Nussenzweig, P. J. Bjorkman
Asymmetric Recognition Of Hiv-1 Envelope Trimer By V1V2 Loop-Targeting Antibodies.
Elife V. 6 2017
PubMed-ID: 28548638  |  Reference-DOI: 10.7554/ELIFE.27389

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN GP160
    Chains: A, B, C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 509-661
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 2 - ENVELOPE GLYCOPROTEIN GP160
    Chains: D, E, F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 30-505
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 3 - BG1 FAB LIGHT CHAIN
    Chains: G, I
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Gene: IGKC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 4 - BG1 FAB HEAVY CHAIN
    Chains: H, J
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 5 - 8ANC195 G52K5 FAB HEAVY CHAIN
    Chains: K, M, O
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 6 - 8ANC195 G52K5 FAB LIGHT CHAIN
    Chains: L, N, P
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 163)

Asymmetric/Biological Unit (4, 163)
No.NameCountTypeFull Name
1BMA25Ligand/IonBETA-D-MANNOSE
2FUC1Ligand/IonALPHA-L-FUCOSE
3MAN37Ligand/IonALPHA-D-MANNOSE
4NAG100Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (57, 57)

Asymmetric Unit (57, 57)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:611 , TRP A:614binding site for Mono-Saccharide NAG A 701 bound to ASN A 611
02AC2SOFTWARESER A:636 , ASN A:637 , ASN N:31 , ALA N:52binding site for Poly-Saccharide residues NAG A 702 through MAN A 706 bound to ASN A 637
03AC3SOFTWAREASN B:611 , TRP B:614binding site for Mono-Saccharide NAG B 701 bound to ASN B 611
04AC4SOFTWARESER B:636 , ASN B:637 , ASN L:31 , ALA L:52binding site for Poly-Saccharide residues NAG B 702 through MAN B 706 bound to ASN B 637
05AC5SOFTWAREASN C:611 , TRP C:614binding site for Mono-Saccharide NAG C 701 bound to ASN C 611
06AC6SOFTWARESER C:636 , ASN C:637 , ASN P:31 , ALA P:52binding site for Poly-Saccharide residues NAG C 702 through MAN C 706 bound to ASN C 637
07AC7SOFTWAREGLY B:527 , GLU D:87 , ASN D:88binding site for Poly-Saccharide residues NAG D 601 through NAG D 602 bound to ASN D 88
08AC8SOFTWAREASN D:133binding site for Mono-Saccharide NAG D 603 bound to ASN D 133
09AC9SOFTWAREASN D:156 , TYR D:173 , TYR J:28 , TYR J:107binding site for Poly-Saccharide residues NAG D 604 through MAN D 608 bound to ASN D 156
10AD1SOFTWAREGLN D:130 , ASN D:160 , LYS D:171 , HIS I:92 , SER I:93 , PRO I:94 , ALA J:55 , GLN J:61 , GLN J:111 , GLU J:112 , GLY J:113 , GLY J:115 , TYR J:116binding site for Poly-Saccharide residues PHE J 114 through MAN J 1605 bound to ASN D 160
11AD2SOFTWAREARG D:192 , ASN D:197binding site for Poly-Saccharide residues NAG D 609 through NAG D 610 bound to ASN D 197
12AD3SOFTWAREASN D:234 , TRP K:55 , SER K:70 , ALA K:71 , VAL K:72 , ASP K:73binding site for Poly-Saccharide residues NAG D 611 through MAN D 614 bound to ASN D 234
13AD4SOFTWARELYS D:65 , ASN D:262 , ASN D:377 , GLY D:379 , CYS D:445 , VAL D:446 , SER D:447binding site for Poly-Saccharide residues NAG D 615 through MAN D 621 bound to ASN D 262
14AD5SOFTWAREASN D:276 , THR D:278 , ASN D:279 , GLN K:1 , TYR K:25 , GLY K:26binding site for Poly-Saccharide residues NAG D 622 through MAN D 625 bound to ASN D 276
15AD6SOFTWAREGLN D:293 , ASN D:295 , ASN D:332 , SER D:334 , SER D:413 , ARG D:444binding site for Poly-Saccharide residues NAG D 626 through NAG D 627 bound to ASN D 295
16AD7SOFTWAREASN D:301 , ILE D:323 , GLY D:441binding site for Poly-Saccharide residues NAG D 628 through NAG D 629 bound to ASN D 301
17AD8SOFTWAREHIS D:330 , ASN D:332 , THR D:415binding site for Poly-Saccharide residues NAG D 630 through MAN D 633 bound to ASN D 332
18AD9SOFTWAREASN D:339 , TRP D:395binding site for Mono-Saccharide NAG D 634 bound to ASN D 339
19AE1SOFTWAREASN D:355binding site for Mono-Saccharide NAG D 635 bound to ASN D 355
20AE2SOFTWAREASN D:363 , SER D:364 , ASN D:386 , SER D:388 , NAG D:638 , NAG D:639binding site for Poly-Saccharide residues NAG D 636 through NAG D 637 bound to ASN D 363
21AE3SOFTWAREASN D:386 , SER D:388 , NAG D:636 , NAG D:637binding site for Poly-Saccharide residues NAG D 638 through BMA D 640 bound to ASN D 386
22AE4SOFTWAREASN D:392binding site for Poly-Saccharide residues NAG D 641 through NAG D 642 bound to ASN D 392
23AE5SOFTWAREPRO D:291 , VAL D:292 , GLN D:293 , ASN D:448binding site for Poly-Saccharide residues NAG D 643 through BMA D 645 bound to ASN D 448
24AE6SOFTWAREGLY C:527 , GLU E:87 , ASN E:88binding site for Poly-Saccharide residues NAG E 601 through NAG E 602 bound to ASN E 88
25AE7SOFTWAREASN E:133 , ASP E:141 , GLY E:152binding site for Poly-Saccharide residues NAG E 603 through NAG E 604 bound to ASN E 133
26AE8SOFTWAREASN E:156 , TYR E:173binding site for Poly-Saccharide residues NAG E 605 through BMA E 607 bound to ASN E 156
27AE9SOFTWAREPHE E:159 , ASN E:160 , LYS E:171binding site for Poly-Saccharide residues NAG E 608 through NAG E 609 bound to ASN E 160
28AF1SOFTWAREARG E:192 , ILE E:194 , ASN E:197binding site for Poly-Saccharide residues NAG E 610 through NAG E 611 bound to ASN E 197
29AF2SOFTWAREASN E:234 , TRP O:55 , SER O:70 , ALA O:71 , VAL O:72 , ASP O:73binding site for Poly-Saccharide residues NAG E 612 through MAN E 615 bound to ASN E 234
30AF3SOFTWAREASN E:262 , ASN E:377 , GLY E:379 , GLN E:440 , CYS E:445 , VAL E:446 , SER E:447binding site for Poly-Saccharide residues NAG E 616 through MAN E 622 bound to ASN E 262
31AF4SOFTWAREASN E:276 , THR E:278 , ASN E:279 , GLN O:1 , HIS O:3 , TYR O:25 , GLY O:26binding site for Poly-Saccharide residues NAG E 623 through MAN E 627 bound to ASN E 276
32AF5SOFTWAREASN E:295 , ASN E:332 , SER E:334 , SER E:413 , ARG E:444binding site for Poly-Saccharide residues NAG E 628 through NAG E 629 bound to ASN E 295
33AF6SOFTWAREASN E:301 , ILE E:323binding site for Poly-Saccharide residues NAG E 630 through NAG E 631 bound to ASN E 301
34AF7SOFTWAREHIS E:330 , ASN E:332 , THR E:415binding site for Poly-Saccharide residues NAG E 632 through NAG E 633 bound to ASN E 332
35AF8SOFTWAREASN E:339binding site for Mono-Saccharide NAG E 634 bound to ASN E 339
36AF9SOFTWAREASN E:355binding site for Mono-Saccharide NAG E 635 bound to ASN E 355
37AG1SOFTWAREASN E:363 , SER E:364 , ASN E:386 , SER E:388 , NAG E:639binding site for Poly-Saccharide residues NAG E 636 through BMA E 638 bound to ASN E 363
38AG2SOFTWAREASN E:386 , SER E:388 , NAG E:636 , NAG E:637binding site for Mono-Saccharide NAG E 639 bound to ASN E 386
39AG3SOFTWAREASN E:392binding site for Poly-Saccharide residues FUC E 640 through NAG E 641 bound to ASN E 392
40AG4SOFTWAREPRO E:291 , VAL E:292 , GLN E:293 , ASN E:448binding site for Poly-Saccharide residues NAG E 642 through MAN E 646 bound to ASN E 448
41AG5SOFTWAREGLY A:527 , GLU F:87 , ASN F:88binding site for Poly-Saccharide residues NAG F 601 through NAG F 602 bound to ASN F 88
42AG6SOFTWAREASN F:133 , ASP F:141 , GLY F:152 , ARG F:178 , LYS F:189binding site for Mono-Saccharide NAG F 603 bound to ASN F 133
43AG7SOFTWAREASN F:156 , TYR F:173 , LEU F:175 , GLY H:26 , PHE H:27 , TYR H:28 , ASP H:31 , TRP H:54 , TYR H:107binding site for Poly-Saccharide residues NAG F 604 through MAN F 608 bound to ASN F 156
44AG8SOFTWAREPHE F:159 , ASN F:160 , LYS F:171 , ARG H:52 , GLN H:61 , GLN H:111 , GLY H:113 , PHE H:114 , PHE I:28binding site for Poly-Saccharide residues NAG F 609 through MAN F 613 bound to ASN F 160
45AG9SOFTWAREILE F:184 , ARG F:192 , ASN F:197binding site for Poly-Saccharide residues NAG F 614 through NAG F 615 bound to ASN F 197
46AH1SOFTWAREASN F:234 , TRP M:55 , ALA M:71 , VAL M:72 , ASP M:73binding site for Poly-Saccharide residues NAG F 616 through MAN F 619 bound to ASN F 234
47AH2SOFTWAREASN F:262 , GLY F:379 , ILE F:439 , GLN F:440 , CYS F:445 , VAL F:446 , SER F:447binding site for Poly-Saccharide residues NAG F 620 through MAN F 626 bound to ASN F 262
48AH3SOFTWAREASN F:276 , THR F:278 , ASN F:279 , GLN M:1 , HIS M:3 , TYR M:25binding site for Poly-Saccharide residues NAG F 627 through MAN F 631 bound to ASN F 276
49AH4SOFTWAREGLN F:293 , ASN F:295 , ASN F:332 , SER F:334 , SER F:413 , ARG F:444binding site for Poly-Saccharide residues NAG F 632 through NAG F 633 bound to ASN F 295
50AH5SOFTWAREASN F:301 , ILE F:323 , GLY F:441binding site for Poly-Saccharide residues NAG F 634 through NAG F 635 bound to ASN F 301
51AH6SOFTWAREHIS F:330 , ASN F:332 , THR F:415binding site for Poly-Saccharide residues NAG F 636 through NAG F 637 bound to ASN F 332
52AH7SOFTWAREASN F:339 , TRP F:395binding site for Mono-Saccharide NAG F 638 bound to ASN F 339
53AH8SOFTWAREASN F:355binding site for Mono-Saccharide NAG F 639 bound to ASN F 355
54AH9SOFTWAREASN F:363 , SER F:364 , ASN F:386 , SER F:388 , NAG F:643 , NAG F:644binding site for Poly-Saccharide residues NAG F 640 through BMA F 642 bound to ASN F 363
55AI1SOFTWAREASN F:386 , SER F:388 , NAG F:640 , NAG F:641binding site for Poly-Saccharide residues NAG F 643 through BMA F 645 bound to ASN F 386
56AI2SOFTWAREASN F:392binding site for Mono-Saccharide NAG F 646 bound to ASN F 392
57AI3SOFTWAREPRO F:291 , GLN F:293 , ASN F:448binding site for Poly-Saccharide residues NAG F 647 through BMA F 649 bound to ASN F 448

(-) SS Bonds  (52, 52)

Asymmetric/Biological Unit
No.Residues
1A:598 -A:604
2A:605 -F:501
3B:598 -B:604
4C:598 -C:604
5C:605 -E:501
6D:54 -D:74
7D:119 -D:205
8D:126 -D:196
9D:131 -D:157
10D:218 -D:247
11D:228 -D:239
12D:296 -D:331
13D:378 -D:445
14D:385 -D:418
15E:54 -E:74
16E:119 -E:205
17E:126 -E:196
18E:131 -E:157
19E:218 -E:247
20E:228 -E:239
21E:296 -E:331
22E:378 -E:445
23E:385 -E:418
24F:54 -F:74
25F:119 -F:205
26F:126 -F:196
27F:131 -F:157
28F:218 -F:247
29F:228 -F:239
30F:296 -F:331
31F:378 -F:445
32F:385 -F:418
33G:23 -G:88
34G:134 -G:194
35H:22 -H:98
36H:160 -H:216
37I:23 -I:88
38I:134 -I:194
39J:22 -J:98
40J:160 -J:216
41K:22 -K:92
42K:140 -K:196
43L:23 -L:88
44L:134 -L:194
45M:22 -M:92
46M:140 -M:196
47N:23 -N:88
48N:134 -N:194
49O:22 -O:92
50O:140 -O:196
51P:23 -P:88
52P:134 -P:194

(-) Cis Peptide Bonds  (33, 33)

Asymmetric/Biological Unit
No.Residues
1Gly A:600 -Lys A:601
2Gly B:600 -Lys B:601
3Gly C:600 -Lys C:601
4Gly D:312 -Pro D:313
5Gly E:312 -Pro E:313
6Gly F:312 -Pro F:313
7Ser G:7 -Pro G:8
8Asn G:76 -Thr G:77
9Pro G:94 -Pro G:95
10Tyr G:140 -Pro G:141
11Phe H:166 -Pro H:167
12Glu H:168 -Pro H:169
13Ser I:7 -Pro I:8
14Asn I:76 -Thr I:77
15Pro I:94 -Pro I:95
16Tyr I:140 -Pro I:141
17Phe J:166 -Pro J:167
18Glu J:168 -Pro J:169
19Phe K:146 -Pro K:147
20Glu K:148 -Pro K:149
21Ser L:7 -Pro L:8
22Tyr L:94 -Pro L:95
23Tyr L:140 -Pro L:141
24Phe M:146 -Pro M:147
25Glu M:148 -Pro M:149
26Ser N:7 -Pro N:8
27Tyr N:94 -Pro N:95
28Tyr N:140 -Pro N:141
29Phe O:146 -Pro O:147
30Glu O:148 -Pro O:149
31Ser P:7 -Pro P:8
32Tyr P:94 -Pro P:95
33Tyr P:140 -Pro P:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VIY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VIY)

(-) Exons   (0, 0)

(no "Exon" information available for 5VIY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhh.hhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy A  519 FLGFLGAAGSTMGAASMTLTVQARNLLSGIQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   528       538       548|      571       581       591       601       611       621       631       641       651       661   
                                                       548|                                                                                                      
                                                        562                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhh.hhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy B  519 FLGFLGAAGSTMGAASMTLTVQARNLLSGIQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   528       538       548|      571       581       591       601       611       621       631       641       651       661   
                                                       548|                                                                                                      
                                                        562                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhh.hhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy C  519 FLGFLGAAGSTMGAASMTLTVQARNLLSGIQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   528       538       548|      571       581       591       601       611       621       631       641       651       661   
                                                       548|                                                                                                      
                                                        562                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee.....eeee..hhhhhh..................eeee......ee.....hhhhhhhhhhhhhhhhhh....hhhhh.................eeeeee............eeeeee.hhh.ee....ee.hhhhhh.eeee...........eeee....eeeeee.......ee....eeee.............eee.....................eeeeeeeeeeeeeeee.....eeee.......eeee.........eeeeeehhhhhhhhhhhhhhhhhhh....eeee......hhhhheeeeee..eeeeee.hhhhheee.....eeeeeeeee...hhhhh..eeee.......eeeeeeeeeeeeee........eeeeee....hhhhhhhh...eeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy D   33 NLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52        62        72        82        92       102       112       122       132       152       162       172       182  ||   193       203       213       223       233       243       253       263       273       283       293       303     ||315      |324       334       344       354       364       374       384       394   ||  416       426       436       446       456       466       476       486       496         
                                                                                                                                      141|                              185|                                                                                                                       309|      321A                                                                          398|                                                                                              
                                                                                                                                       152                               187                                                                                                                        312                                                                                     411                                                                                              


Chain E from PDB  Type:PROTEIN  Length:449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee.....eeee..hhhhhh..................eeee......ee.....hhhhhhhhhhhhhhhhhh....hhhhh.................eeeee..............eeeee.hhheee....eeehhhhhh.eeee...........eeee....eeeeee.......ee....eeee.............eee.....................eeeeeeeeeeeeeeee.............................eeeeeehhhhhhhhhhhhhhhhhhh....eeee......hhhhheeeeee..eeeeee.hhhhh.ee.....eeeeeeeee...hhhhh..eeee.......eeeeeeeeeeeeee........eeeeee....hhhhhhhh...eeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy E   33 NLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52        62        72        82        92       102       112       122       132       152       162       172       182  ||   193       203       213       223       233       243       253       263       273       283       293       303     ||315      |324       334       344       354       364       374       384       394   ||  416       426       436       446       456       466       476       486       496         
                                                                                                                                      141|                              185|                                                                                                                       309|      321A                                                                          398|                                                                                              
                                                                                                                                       152                               187                                                                                                                        312                                                                                     411                                                                                              


Chain F from PDB  Type:PROTEIN  Length:449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee.....eeee..hhhhhh..................eeee......ee.....hhhhhhhhhhhhhhhhhh....hhhhh.................eeeee..............eeeee.hhh.ee....ee.hhhhhh.eeee...........eeee....eeeeee.......ee....eeee.............eee.....................eeeeeeeeeeeeeeee.............................eeeeeehhhhhhhhhhhhhhhhhhh....eeee......hhhhheeeeee..eeeeee.hhhhheee.....eeeeeeeee...hhhhh..eeee.......eeeeeeeeeeeeee........eeeeee....hhhhhhhh...eeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy F   33 NLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52        62        72        82        92       102       112       122       132       152       162       172       182  ||   193       203       213       223       233       243       253       263       273       283       293       303     ||315      |324       334       344       354       364       374       384       394   ||  416       426       436       446       456       466       476       486       496         
                                                                                                                                      141|                              185|                                                                                                                       309|      321A                                                                          398|                                                                                              
                                                                                                                                       152                               187                                                                                                                        312                                                                                     411                                                                                              


Chain G from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eeee...eeeeeee........eeeeee.......eeeehhhee.......eeee.....eeeeee........eeeeee............eeee.........eee..hhhhhhh....eeeeeeee....eeeeeee........eeeee.........eeeeeee...hhhhhh...eeeeeee......eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy G    1 DIHMTQSPVSLSASGDRVTITCRASHFIANYVNWYQQKPGKAPTLLIFESSTLQRGVPSRFSAYGDGTEFTLSINTLQPEDFASYICQQSHSPPVTFGAGTRVDQKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10   ||   21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
                                        14|                                                                                                                                                                                                     
                                         16                                                                                                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...ee.....ee.eeee...hhhhh.eeeeee......eeeeee.hhhhh.............eeeee....eeeeee...hhhhheeeeeee..........................eeeee........eeeee.....eeeeeeee.................eee..........eeeeeee..hhhhh..eeee..........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy H    1 AEQLVESGGGLVPPGRSLRLSCSASGFYFPDYAMAWVRQAPGQGLQWVGFMRGWAYGGSAQFAAFAVGKFAISRDDGRNVVYLDVKNPTFEDTGVYFCAREQRNKDYRYGQEGFGYSYGMDVWGRGTTVVVSTASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLQTYICNVNHKPSNTKVDKRVEP  233
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     ||158       168       178       188       198       208||     220       230   
                                                                                                                                                                           146|                                                   209|                     
                                                                                                                                                                            155                                                    212                     


Chain I from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eeee....eeeeeee........eeeeee.......eeeehhhee.......eeee.....eeeeee........eeeeee............eeee.........eee..hhhhhhh....eeeeeeee....eeeeeee........eeeee.........eeeeeee...hhhhhh...eeeeeee......eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy I    1 DIHMTQSPVSLSASVGDRVTITCRASHFIANYVNWYQQKPGKAPTLLIFESSTLQRGVPSRFSAYGDGTEFTLSINTLQPEDFASYICQQSHSPPVTFGAGTRVDQKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain J from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...ee.....ee.eeee...hhhhh.eeeeee......eeeeee.hhhhh.............eeeee....eeeeee...hhhhheeeeeee..........................eeeee........eeeee.....eeeeeeee.................eee..........eeeeeee..hhhhh..eeee..........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy J    1 AEQLVESGGGLVPPGRSLRLSCSASGFYFPDYAMAWVRQAPGQGLQWVGFMRGWAYGGSAQFAAFAVGKFAISRDDGRNVVYLDVKNPTFEDTGVYFCAREQRNKDYRYGQEGFGYSYGMDVWGRGTTVVVSTASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLQTYICNVNHKPSNTKVDKRVEP  233
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     ||158       168       178       188       198       208||     220       230   
                                                                                                                                                                           146|                                                   209|                     
                                                                                                                                                                            155                                                    212                     


Chain K from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...eee.....eeeeee.........eeeeeeee.....eeeeeeee..eeee.......eeeeee........eeeeee...hhhhheeeeeeeee........ee..ee...ee...eeeee........eeeee.....eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy K    1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                                    10        20        30     |  39        49  ||    60        70       77C|     ||83        93      100C|||||||101       111       121      |137       147       157       167       177       187       197       207       
                                                             35A               52|                     77A|||   82A||               100A|||||100J||                         128|                                                                               
                                                                                54                      77B||    82B|                100B|||||100K|                          135                                                                               
                                                                                                         77C|     82C                 100C|||||100L                                                                                                            
                                                                                                          77D                          100D|||||                                                                                                               
                                                                                                                                        100E||||                                                                                                               
                                                                                                                                         100F|||                                                                                                               
                                                                                                                                          100G||                                                                                                               
                                                                                                                                           100H|                                                                                                               
                                                                                                                                            100I                                                                                                               


Chain L from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy L    1 DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30|       39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                        30A                                                                                                                                                                                       


Chain M from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee.......eeeeeeee.....eeeeeeee..eeee.......eeeeee........eeeeee...hhhhheeeeeeeee........ee..ee...ee...eeeee........eeeee.....eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy M    1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                                    10        20        30     |  39        49  ||    60        70       77C|     ||83        93      100C|||||||101       111       121      |137       147       157       167       177       187       197       207       
                                                             35A               52|                     77A|||   82A||               100A|||||100J||                         128|                                                                               
                                                                                54                      77B||    82B|                100B|||||100K|                          135                                                                               
                                                                                                         77C|     82C                 100C|||||100L                                                                                                            
                                                                                                          77D                          100D|||||                                                                                                               
                                                                                                                                        100E||||                                                                                                               
                                                                                                                                         100F|||                                                                                                               
                                                                                                                                          100G||                                                                                                               
                                                                                                                                           100H|                                                                                                               
                                                                                                                                            100I                                                                                                               


Chain N from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy N    1 DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30|       39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                        30A                                                                                                                                                                                       


Chain O from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee.......eeeeeeee.....eeeeeeee..eeee.......eeeeee........eeeeee...hhhhheeeeeeeee........ee..ee...ee...eeeee........eeeee.....eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy O    1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                                    10        20        30     |  39        49  ||    60        70       77C|     ||83        93      100C|||||||101       111       121      |137       147       157       167       177       187       197       207       
                                                             35A               52|                     77A|||   82A||               100A|||||100J||                         128|                                                                               
                                                                                54                      77B||    82B|                100B|||||100K|                          135                                                                               
                                                                                                         77C|     82C                 100C|||||100L                                                                                                            
                                                                                                          77D                          100D|||||                                                                                                               
                                                                                                                                        100E||||                                                                                                               
                                                                                                                                         100F|||                                                                                                               
                                                                                                                                          100G||                                                                                                               
                                                                                                                                           100H|                                                                                                               
                                                                                                                                            100I                                                                                                               


Chain P from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5viy P    1 DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30|       39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                        30A
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VIY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VIY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VIY)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FUC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
    AE2  [ RasMol ]  +environment [ RasMol ]
    AE3  [ RasMol ]  +environment [ RasMol ]
    AE4  [ RasMol ]  +environment [ RasMol ]
    AE5  [ RasMol ]  +environment [ RasMol ]
    AE6  [ RasMol ]  +environment [ RasMol ]
    AE7  [ RasMol ]  +environment [ RasMol ]
    AE8  [ RasMol ]  +environment [ RasMol ]
    AE9  [ RasMol ]  +environment [ RasMol ]
    AF1  [ RasMol ]  +environment [ RasMol ]
    AF2  [ RasMol ]  +environment [ RasMol ]
    AF3  [ RasMol ]  +environment [ RasMol ]
    AF4  [ RasMol ]  +environment [ RasMol ]
    AF5  [ RasMol ]  +environment [ RasMol ]
    AF6  [ RasMol ]  +environment [ RasMol ]
    AF7  [ RasMol ]  +environment [ RasMol ]
    AF8  [ RasMol ]  +environment [ RasMol ]
    AF9  [ RasMol ]  +environment [ RasMol ]
    AG1  [ RasMol ]  +environment [ RasMol ]
    AG2  [ RasMol ]  +environment [ RasMol ]
    AG3  [ RasMol ]  +environment [ RasMol ]
    AG4  [ RasMol ]  +environment [ RasMol ]
    AG5  [ RasMol ]  +environment [ RasMol ]
    AG6  [ RasMol ]  +environment [ RasMol ]
    AG7  [ RasMol ]  +environment [ RasMol ]
    AG8  [ RasMol ]  +environment [ RasMol ]
    AG9  [ RasMol ]  +environment [ RasMol ]
    AH1  [ RasMol ]  +environment [ RasMol ]
    AH2  [ RasMol ]  +environment [ RasMol ]
    AH3  [ RasMol ]  +environment [ RasMol ]
    AH4  [ RasMol ]  +environment [ RasMol ]
    AH5  [ RasMol ]  +environment [ RasMol ]
    AH6  [ RasMol ]  +environment [ RasMol ]
    AH7  [ RasMol ]  +environment [ RasMol ]
    AH8  [ RasMol ]  +environment [ RasMol ]
    AH9  [ RasMol ]  +environment [ RasMol ]
    AI1  [ RasMol ]  +environment [ RasMol ]
    AI2  [ RasMol ]  +environment [ RasMol ]
    AI3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn G:76 - Thr G:77   [ RasMol ]  
    Asn I:76 - Thr I:77   [ RasMol ]  
    Glu H:168 - Pro H:169   [ RasMol ]  
    Glu J:168 - Pro J:169   [ RasMol ]  
    Glu K:148 - Pro K:149   [ RasMol ]  
    Glu M:148 - Pro M:149   [ RasMol ]  
    Glu O:148 - Pro O:149   [ RasMol ]  
    Gly A:600 - Lys A:601   [ RasMol ]  
    Gly B:600 - Lys B:601   [ RasMol ]  
    Gly C:600 - Lys C:601   [ RasMol ]  
    Gly D:312 - Pro D:313   [ RasMol ]  
    Gly E:312 - Pro E:313   [ RasMol ]  
    Gly F:312 - Pro F:313   [ RasMol ]  
    Phe H:166 - Pro H:167   [ RasMol ]  
    Phe J:166 - Pro J:167   [ RasMol ]  
    Phe K:146 - Pro K:147   [ RasMol ]  
    Phe M:146 - Pro M:147   [ RasMol ]  
    Phe O:146 - Pro O:147   [ RasMol ]  
    Pro G:94 - Pro G:95   [ RasMol ]  
    Pro I:94 - Pro I:95   [ RasMol ]  
    Ser G:7 - Pro G:8   [ RasMol ]  
    Ser I:7 - Pro I:8   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
    Ser N:7 - Pro N:8   [ RasMol ]  
    Ser P:7 - Pro P:8   [ RasMol ]  
    Tyr G:140 - Pro G:141   [ RasMol ]  
    Tyr I:140 - Pro I:141   [ RasMol ]  
    Tyr L:140 - Pro L:141   [ RasMol ]  
    Tyr L:94 - Pro L:95   [ RasMol ]  
    Tyr N:140 - Pro N:141   [ RasMol ]  
    Tyr N:94 - Pro N:95   [ RasMol ]  
    Tyr P:140 - Pro P:141   [ RasMol ]  
    Tyr P:94 - Pro P:95   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5viy
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  IGKC_HUMAN | P01834
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q2N0S6_9HIV1 | Q2N0S6
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q8TCD0_HUMAN | Q8TCD0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  S6B291_HUMAN | S6B291
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  IGKC_HUMAN | P01834
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q2N0S6_9HIV1 | Q2N0S6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q8TCD0_HUMAN | Q8TCD0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  S6B291_HUMAN | S6B291
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IGKC_HUMAN | P01834: 1a4j 1a4k 1cly 1d5b 1d5i 1d6v 1dfb 1gaf 1hez 1hkl 1hzh 1i7z 1mim 1n0x 1om3 1op3 1op5 1ucb 2ny7 2o5x 2o5y 2o5z 2qqk 2qql 2qqn 2qsc 2r56 2rfx 2vxq 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3cfj 3cfk 3csy 3d0l 3d85 3dvg 3dvn 3eyf 3eyo 3eyq 3iu3 3o11 3qct 3qcu 3qcv 3ru8 3u0w 3u7w 3u7y 3vh8 3wuw 3x11 3x12 4d3c 4d9r 4hix 4nm4 4nm8 4xmp 4xny 4xnz 4xxd 4ydv 5b38 5b39 5c7k 5esv 5esz 5ewi 5veb
        Q2N0S6_9HIV1 | Q2N0S6: 5v7j 5v8l 5v8m 5vj6 5w6d
        Q8TCD0_HUMAN | Q8TCD0: 1hzh 1n0x 3mnv 3mnw 3mnz 3pgf 4d9q 4nug 4nuj 4nwt 5vj6 5vod
        S6B291_HUMAN | S6B291: 3mnw 3mnz 4eow 5c7k 5cus 5d9q 5veb 5vic 5vig 5vj6 5vob 5voc 5vod
UniProtKB/TrEMBL
        Q2N0S6_9HIV1 | Q2N0S6: 3j5m 4nco 4zmj 5aco 5c7k 5cez 5cjx 5d9q 5fyl 5i8h 5js9 5jsa 5t3s 5t3x 5t3z 5thr 5u1f 5utf 5uty
        Q8TCD0_HUMAN | Q8TCD0: 3cfj 3cfk 4nwu
        S6B291_HUMAN | S6B291: 4llw 4lly 4oqt 4ydv

(-) Related Entries Specified in the PDB File

5vj6