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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE BG505 SOSIP GP140 HIV-1 ENV TRIMER BOUND T NEUTRALIZING ANTIBODIES PGT128 AND 8ANC195
Keywords HIV-1, SOSIP, PGT128, 8ANC195, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5C7K     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ANTIBODY FAB PGT128 HEAVY CHAIN  A 230 1735 0
2  Protein   ANTIBODY FAB PGT128 LIGHT CHAIN  B 204 1514 0
3  Protein   ENVELOPE GLYCOPROTEIN GP120  C 450 3544 0
4  Protein   ENVELOPE GLYCOPROTEIN GP41  D 122 978 0
5  Protein   ANTIBODY FAB 8ANC195 HEAVY CHAIN  E 224 1686 0
6  Protein   ANTIBODY FAB 8ANC195 LIGHT CHAIN  F 212 1626 0
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    I 2 0 28
10  Ligand    J 2 0 28
11  Ligand    K 9 0 105
12  Ligand    L 10 0 116
13  Ligand    M 9 0 105
14  Ligand    N 7 0 83
15  Ligand    O 5 0 61
16  Ligand    P 3 0 39
17  Ligand    Q 3 0 39
18  Ligand    R 3 0 39
19  Ligand    S 8 0 94
20  Ligand    T 11 0 127
21  Ligand   ENVELOPE GLYCOPROTEIN GP120  C 5 0 61
22  Ligand   ENVELOPE GLYCOPROTEIN GP41  D 2 0 28
total       1525 11083 1009
Proteins
Unit 1 PRO2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 THR10 LEU11 VAL12 GLU13 ALA14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 ALA23 VAL24 SER25 GLY26 ASP27 SER28 THR29 ALA30 ALA31 CYS32 ASN33 SER34 PHE35 TRP35A GLY35B TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 GLY49 SER50 LEU51 SER52 HIS52A CYS52B ALA52C SER52D TYR52E TRP52F ASN53 ARG54 GLY55 TRP56 THR57 TYR58 HIS59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 LEU67 THR68 LEU69 ALA70 LEU71 ASP72 THR73 PRO74 LYS75 ASN76 LEU77 VAL78 PHE79 LEU80 LYS81 LEU82 ASN82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 THR89 TYR90 TYR91 CYS92 ALA93 ARG94 PHE95 GLY96 GLY97 GLU98 VAL99 LEU100 ARG100A TYR100B THR100C ASP100D TRP100E PRO100F LYS100G PRO100H ALA100I TRP100J VAL100K ASP101 LEU102 TRP103 GLY104 ARG105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER134 GLY135 GLY136 THR137 ALA138 ALA139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 ASP146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER155 TRP157 ASN158 SER163 GLY164 ALA165 LEU166 THR167 SER168 GLY169 VAL170 HIS172 THR173 PHE174 PRO175 ALA176 VAL177 LEU178 GLN179 SER180 SER181 GLY183 LEU184 TYR185 SER186 LEU187 SER188 SER189 VAL190 VAL191 THR192 VAL193 PRO194 SER195 SER196 SER197 LEU198 GLY199 THR200 GLN201 THR205 TYR206 ILE207 CYS208 ASN209 VAL210 ASN211 HIS212 LYS213 PRO214 SER215 ASN216 THR217 LYS218 VAL219 ASP220 LYS221 ARG222 VAL225 GLU226 PRO227
Unit 2 LEU4 THR5 GLN6 PRO7 PRO8 SER9 ALA11 SER12 GLY13 SER14 PRO15 GLY16 GLN17 SER18 ILE19 THR20 ILE21 SER22 CYS23 THR24 GLY25 THR26 SER27 ASN30 ASN31 PHE32 VAL33 SER34 TRP35 TYR36 GLN37 GLN38 HIS39 ALA40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 VAL47 ILE48 TYR49 ASP50 VAL51 ASN52 LYS53 ARG54 PRO55 SER56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 GLY64 SER65 LYS66 SER67 GLY68 ASN69 THR70 ALA71 SER72 LEU73 THR74 VAL75 SER76 GLY77 LEU78 GLN79 THR80 ASP81 ASP82 GLU83 ALA84 VAL85 TYR86 TYR87 CYS88 GLY89 SER90 LEU91 VAL92 GLY93 ASN94 TRP95 ASP95A VAL96 ILE97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 THR105 VAL106 LEU106A GLY107 GLN108 PRO109 LYS110 ALA111 ALA112 PRO113 SER114 VAL115 THR116 LEU117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLU124 LEU125 GLN126 ALA127 ASN128 LYS129 ALA130 THR131 LEU132 VAL133 CYS134 LEU135 ILE136 SER137 ASP138 PHE139 TYR140 PRO141 GLY142 ALA143 VAL144 THR145 VAL146 ALA147 TRP148 LYS149 ALA150 ASP151 SER152 SER153 PRO154 VAL155 LYS156 ALA157 GLY158 VAL159 GLU160 THR161 THR162 THR163 PRO164 SER165 LYS166 GLN167 SER168 ASN170 ASN171 LYS172 TYR173 ALA174 ALA175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 PRO183 GLU184 GLN185 TRP186 LYS187 SER188 HIS189 ARG190 SER191 TYR192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 SER203 THR204 VAL205 GLU206 LYS207 THR208 VAL209 ALA210 PRO211
Unit 3 ARG30 ALA31 GLU32 ASN33 LEU34 TRP35 VAL36 THR37 VAL38 TYR39 TYR40 GLY41 VAL42 PRO43 VAL44 TRP45 LYS46 ASP47 ALA48 GLU49 THR50 THR51 LEU52 PHE53 CYS54 ALA55 SER56 ASP57 ALA58 LYS59 ALA60 TYR61 GLU62 THR63 GLU64 LYS65 HIS66 ASN67 VAL68 TRP69 ALA70 THR71 HIS72 ALA73 CYS74 VAL75 PRO76 THR77 ASP78 PRO79 ASN80 PRO81 GLN82 GLU83 ILE84 HIS85 LEU86 GLU87 ASN88 VAL89 THR90 GLU91 GLU92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASN99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 THR106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 PRO124 LEU125 CYS126 VAL127 THR128 LEU129 GLN130 CYS131 THR132 ASN133 VAL134 THR135 ASP141 MET150 ARG151 GLY152 GLU153 LEU154 LYS155 ASN156 CYS157 SER158 PHE159 ASN160 MET161 THR162 THR163 GLU164 LEU165 ARG166 ASP167 LYS168 LYS169 GLN170 LYS171 VAL172 TYR173 SER174 LEU175 PHE176 TYR177 ARG178 LEU179 ASP180 VAL181 VAL182 GLN183 ILE184 ASN185 ASN188 LYS189 GLU190 TYR191 ARG192 LEU193 ILE194 ASN195 CYS196 ASN197 THR198 SER199 ALA200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 GLU211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 LYS229 ASP230 LYS231 LYS232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 PRO240 SER241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 LYS252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 VAL270 MET271 ILE272 ARG273 SER274 GLU275 ASN276 ILE277 THR278 ASN279 ASN280 ALA281 LYS282 ASN283 ILE284 LEU285 VAL286 GLN287 PHE288 ASN289 THR290 PRO291 VAL292 GLN293 ILE294 ASN295 CYS296 THR297 ARG298 PRO299 ASN300 ASN301 ASN302 THR303 ARG304 LYS305 SER306 ILE307 ARG308 ILE309 GLY312 PRO313 GLY314 GLN315 ALA316 PHE317 TYR318 ALA319 THR320 GLY321 ASP321A ILE322 ILE323 GLY324 ASP325 ILE326 ARG327 GLN328 ALA329 HIS330 CYS331 ASN332 VAL333 SER334 LYS335 ALA336 THR337 TRP338 ASN339 GLU340 THR341 LEU342 GLY343 LYS344 VAL345 VAL346 LYS347 GLN348 LEU349 ARG350 LYS351 HIS352 PHE353 GLY354 ASN355 ASN356 THR357 ILE358 ILE359 ARG360 PHE361 ALA362 ASN363 SER364 SER365 GLY366 GLY367 ASP368 LEU369 GLU370 VAL371 THR372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 GLY379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 THR387 SER388 GLY389 LEU390 PHE391 ASN392 SER393 THR394 TRP395 ILE396 SER397 ASN398 THR399 SER400 VAL401 ASN411 ASP412 SER413 ILE414 THR415 LEU416 PRO417 CYS418 ARG419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 ARG429 ILE430 GLY431 GLN432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 GLN440 GLY441 VAL442 ILE443 ARG444 CYS445 VAL446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 ILE453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 SER460 THR461 ASN462 SER463 THR464 THR465 GLU466 THR467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 LYS490 ILE491 GLU492 PRO493 LEU494 GLY495 VAL496 ALA497 PRO498 THR499 ARG500 CYS501 LYS502 ARG503 ARG504
Unit 4 PHE522 LEU523 GLY524 ALA525 ALA526 GLY527 SER528 THR529 MET530 GLY531 ALA532 ALA533 SER534 MET535 THR536 LEU537 THR538 VAL539 GLN540 ALA541 ARG542 ASN543 LEU565 LEU566 LYS567 LEU568 THR569 VAL570 TRP571 GLY572 ILE573 LYS574 GLN575 LEU576 GLN577 ALA578 ARG579 VAL580 LEU581 ALA582 VAL583 GLU584 ARG585 TYR586 LEU587 ARG588 ASP589 GLN590 GLN591 LEU592 LEU593 GLY594 ILE595 TRP596 GLY597 CYS598 SER599 GLY600 LYS601 LEU602 ILE603 CYS604 CYS605 THR606 ASN607 VAL608 PRO609 TRP610 ASN611 SER612 SER613 TRP614 SER615 ASN616 ARG617 ASN618 LEU619 SER620 GLU621 ILE622 TRP623 ASP624 ASN625 MET626 THR627 TRP628 LEU629 GLN630 TRP631 ASP632 LYS633 GLU634 ILE635 SER636 ASN637 TYR638 THR639 GLN640 ILE641 ILE642 TYR643 GLY644 LEU645 LEU646 GLU647 GLU648 SER649 GLN650 ASN651 GLN652 GLN653 GLU654 LYS655 ASN656 GLU657 GLN658 ASP659 LEU660 LEU661 ALA662 LEU663 ASP664
Unit 5 GLN1 ILE2 HIS3 LEU4 VAL5 GLN6 SER7 GLY8 THR9 GLU10 VAL11 LYS12 LYS13 PRO14 GLY15 SER16 SER17 VAL18 THR19 VAL20 SER21 CYS22 LYS23 ALA24 TYR25 GLY26 VAL27 ASN28 THR29 PHE30 GLY31 LEU32 TYR33 ALA34 VAL35 ASN35A TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 SER44 LEU45 GLU46 TYR47 ILE48 GLY49 GLN50 ILE51 TRP52 ARG54 TRP55 LYS56 SER57 SER58 ALA59 SER60 HIS61 HIS62 PHE63 ARG64 GLY65 ARG66 VAL67 LEU68 ILE69 SER70 ALA71 VAL72 ASP73 LEU74 THR75 GLY76 SER77 SER77A PRO77B PRO77C ILE77D SER78 SER79 LEU80 GLU81 ILE82 LYS82A ASN82B LEU82C THR83 SER84 ASP85 ASP86 THR87 ALA88 VAL89 TYR90 PHE91 CYS92 THR93 THR94 THR95 SER96 THR97 TYR98 ASP99 LYS100 TRP100A SER100B GLY100C LEU100D HIS100E HIS100F ASP100G GLY100H VAL100I MET100J ALA100K PHE100L SER101 SER102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 ILE109 SER110 VAL111 SER112 ALA113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214
Unit 6 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 THR10 LEU11 SER12 ALA13 SER14 ILE15 GLY16 ASP17 THR18 VAL19 ARG20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 SER28 ILE29 THR30 GLY30A ASN31 TRP32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 ARG39 PRO40 GLY41 LYS42 ALA43 PRO44 ARG45 LEU46 LEU47 ILE48 TYR49 ARG50 GLY51 ALA52 ALA53 LEU54 LEU55 GLY56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 ALA66 ALA67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 GLY76 ASN77 LEU78 GLN79 ALA80 GLU81 ASP82 PHE83 GLY84 THR85 PHE86 TYR87 CYS88 GLN89 GLN90 TYR91 ASP92 THR93 TYR94 PRO95 GLY96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 VAL106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Ligands
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2
Unit 11 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9
Unit 12 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9 MAN10
Unit 13 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9
Unit 14 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7
Unit 15 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 16 NAG1 NAG2 BMA3
Unit 17 NAG1 NAG2 BMA3
Unit 18 NAG1 NAG2 BMA3
Unit 19 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8
Unit 20 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9 MAN10 MAN11
Unit 21 NAG601 NAG604 NAG607 NAG621 SO4656
Unit 22 NAG709 NAG710
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany