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Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A STABILIZED DS-SOSIP.6MUT BG505 GP140 HIV-1 ENV TRIMER, CONTAINING MUTATIONS I201C-P433C (DS), L154M, Y177W, N300M, N302M, T320L, I420M IN COMPLEX WITH HUMAN ANTIBODIES PGT122 AND 35O22 AT 4.3 A

Authors :   M. Pancera, G. -Y. Chuang, K. Xu, P. D. Kwong

Date :   14 Feb 17 (Deposition) - 29 Mar 17 (Release) - 10 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.50

Chains :   Asym. Unit : B,D,E,G,H,L
Biol. Unit 1: B,D,E,G,H,L  (3x)

Keywords :   Hiv-1 Env, Stabilized Env, Near-Native Mimic Of The Viral Spike, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Y. Chuang, H. Geng, M. Pancera, K. Xu, C. Cheng, P. Acharya, M. Chambers, A. Druz, Y. Tsybovsky, T. G. Wanninger, Y. Yang, N. A. Doria-Rose, I. S. Georgiev, J. Gorman, M. G. Joyce, S. O'Dell, T. Zhou, A. B. Mcdermott, J. R. Mascola, P. D. Kwong
Structure-Based Design Of A Soluble Prefusion-Closed Hiv-1 Env Trimer With Reduced Cd4 Affinity And Improved Immunogenicity.
J. Virol. V. 91 2017
PubMed-ID: 28275193 | Reference-DOI: 10.1128/JVI.02268-16

Molecule 1 - ENVELOPE GLYCOPROTEIN GP120
	Chains	:	G
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Gene	:	ENV
	Mutation	:	YES
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676

Molecule 2 - ENVELOPE GLYCOPROTEIN GP41
	Chains	:	B
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Gene	:	ENV
	Mutation	:	YES
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676

Molecule 3 - PGT122 LIGHT CHAIN
	Chains	:	L
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 4 - PGT122 HEAVY CHAIN
	Chains	:	H
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 5 - 35022 HEAVY CHAIN
	Chains	:	D
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 6 - 35022 LIGHT CHAIN
	Chains	:	E
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric Unit	:	B	D	E	G	H	L
Biological Unit 1 (3x)	:	B	D	E	G	H	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 59)

No.	Name	Count	Type	Full Name
1	BMA	5	Ligand/Ion	BETA-D-MANNOSE
2	MAN	19	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	35	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (3, 177)

No.	Name	Count	Type	Full Name
1	BMA	15	Ligand/Ion	BETA-D-MANNOSE
2	MAN	57	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	105	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN B:611 , SER B:613	binding site for Mono-Saccharide NAG B 701 bound to ASN B 611
02	AC2	SOFTWARE	ASN B:618 , GLU E:53 , ARG E:54	binding site for Mono-Saccharide NAG B 702 bound to ASN B 618
03	AC3	SOFTWARE	GLU B:634 , ASN B:637	binding site for Mono-Saccharide NAG B 703 bound to ASN B 637
04	AC4	SOFTWARE	SER B:528 , ASN D:30 , PHE D:31 , HIS D:33 , SER D:52 , TYR D:53 , ASP D:56 , LYS D:57 , ASN D:58 , ARG D:98 , ASP D:99 , GLY D:100 , THR D:100C , SER D:173 , HIS E:93 , ASN E:94 , SER E:95 , GLY E:95A , LYS E:129 , ASN G:88	binding site for Poly-Saccharide residues NAG G 601 through MAN G 610 bound to ASN G 88
05	AC5	SOFTWARE	CYS G:131 , THR G:132 , ASN G:133 , GLY G:152 , LYS G:155	binding site for Mono-Saccharide NAG G 633 bound to ASN G 133
06	AC6	SOFTWARE	ASN G:137 , ASN H:58 , THR H:100L , TRP L:91 , ASP L:92 , THR L:95B	binding site for Poly-Saccharide residues NAG G 611 through BMA G 613 bound to ASN G 137
07	AC7	SOFTWARE	THR G:135 , ASN G:156	binding site for Poly-Saccharide residues NAG G 634 through MAN G 638 bound to ASN G 156
08	AC8	SOFTWARE	THR G:128 , GLN G:130 , ASN G:160 , LYS G:169	binding site for Poly-Saccharide residues NAG G 639 through NAG G 640 bound to ASN G 160
09	AC9	SOFTWARE	VAL G:182 , ARG G:192 , ASN G:197	binding site for Poly-Saccharide residues NAG G 641 through NAG G 642 bound to ASN G 197
10	AD1	SOFTWARE	PRO D:72D , ASN G:234 , SER G:274	binding site for Poly-Saccharide residues NAG G 614 through NAG G 615 bound to ASN G 234
11	AD2	SOFTWARE	LYS G:65 , SER G:209 , GLU G:211 , LEU G:261 , ASN G:262 , ASN G:377 , CYS G:378 , GLY G:379 , GLN G:440 , CYS G:445 , VAL G:446 , SER G:447 , NAG G:631	binding site for Poly-Saccharide residues NAG G 616 through MAN G 621 bound to ASN G 262
12	AD3	SOFTWARE	ASN G:276 , THR G:278	binding site for Mono-Saccharide NAG G 622 bound to ASN G 276
13	AD4	SOFTWARE	ASN G:295 , ASN G:332 , SER G:334 , ARG G:444	binding site for Poly-Saccharide residues NAG G 643 through NAG G 644 bound to ASN G 295
14	AD5	SOFTWARE	ASN G:301 , ILE G:323	binding site for Poly-Saccharide residues NAG G 645 through NAG G 646 bound to ASN G 301
15	AD6	SOFTWARE	THR G:297 , HIS G:330 , ASN G:332 , ARG H:100 , ILE H:100A , TYR H:100B , GLY H:100C , VAL H:100D , VAL H:100E , ASN L:50 , ASN L:51 , GLY L:67	binding site for Poly-Saccharide residues NAG G 647 through MAN G 656 bound to ASN G 332
16	AD7	SOFTWARE	ASN G:339	binding site for Mono-Saccharide NAG G 623 bound to ASN G 339
17	AD8	SOFTWARE	ASN G:355	binding site for Mono-Saccharide NAG G 624 bound to ASN G 355
18	AD9	SOFTWARE	ASN G:363 , SER G:388 , NAG G:627 , NAG G:628 , NAG G:629	binding site for Poly-Saccharide residues NAG G 625 through NAG G 626 bound to ASN G 363
19	AE1	SOFTWARE	ASN G:386 , SER G:388 , NAG G:625 , NAG G:626 , NAG G:629	binding site for Poly-Saccharide residues NAG G 627 through NAG G 628 bound to ASN G 386
20	AE2	SOFTWARE	ASN G:392 , NAG G:625 , NAG G:628	binding site for Poly-Saccharide residues NAG G 629 through NAG G 630 bound to ASN G 392
21	AE3	SOFTWARE	ASN G:262 , PRO G:291 , ASN G:448 , NAG G:616	binding site for Poly-Saccharide residues NAG G 631 through NAG G 632 bound to ASN G 448

Asymmetric Unit

No.	Residues
1	B:598	-	B:604
2	D:22	-	D:92
3	D:140	-	D:196
4	E:23	-	E:88
5	E:27C	-	E:28
6	E:89	-	E:96
7	E:134	-	E:193
8	G:54	-	G:74
9	G:119	-	G:205
10	G:126	-	G:196
11	G:131	-	G:157
12	G:201	-	G:433
13	G:218	-	G:247
14	G:228	-	G:239
15	G:296	-	G:331
16	G:378	-	G:445
17	G:385	-	G:418
18	G:501	-	B:605
19	H:22	-	H:92
20	H:138	-	H:194
21	L:23	-	L:88
22	L:135	-	L:194

Asymmetric Unit

No.	Residues
1	Gly G:312	-	Pro G:313
2	Gln L:109	-	Pro L:110
3	Tyr L:141	-	Pro L:142
4	Phe H:144	-	Pro H:145
5	Glu H:146	-	Pro H:147
6	Gly H:188	-	Thr H:189
7	Phe D:146	-	Pro D:147
8	Glu D:148	-	Pro D:149
9	Cys E:27C	-	Cys E:28
10	Ala E:127	-	Asn E:128
11	Tyr E:140	-	Pro E:141

(no "SAP(SNP)/Variant" information available for 5UTF)

(no "PROSITE Motif" information available for 5UTF)

(no "Exon" information available for 5UTF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain B from PDB  Type:PROTEIN  Length:123
                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhh.hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                5utf B  518 VFLGFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLL  661
                                   527       537       547|      578       588       598       608       618       628       638       648       658   
                                                       547|                                                                                            
                                                        569

Chain D from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....ee.....eeeeeeeeeehhhhh.eeeeeee...eeeeeeee......eee.......eeeee...ee.....eeeeeeeee...hhhh.eeeeeee.............ee......ee........eeeeeeeeeee....eeeeeeeeeee.....eeee........eeee.........eeeeeee............eeeeee....eeeeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5utf D    1 QGQLVQSGAELKKPGASVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVIMTTDTEVPVTSFTSTGAAYMEIRNLKFDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKGLEVLF  224
                                    10        20        30        40        50  |     59        69   ||||72G|       81 |||    88        98  |||||102       112       122       132       142       152       162       172       182       192       202       212       222  
                                                                              52A                  72A|||||||        82A||               100A|||||                                                                                                                            
                                                                                                    72B||||||         82B|                100B||||                                                                                                                            
                                                                                                     72C|||||          82C                 100C|||                                                                                                                            
                                                                                                      72D||||                               100D||                                                                                                                            
                                                                                                       72E|||                                100E|                                                                                                                            
                                                                                                        72F||                                 100F                                                                                                                            
                                                                                                         72G|                                                                                                                                                                 
                                                                                                          72H

Chain E from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..eeeee.....ee.ee..........eeeeeee......eeeee...ee.......eeeee....eeeee...hhhhh.eeeeeee......ee...eeeeee.......eeeee............eeeeeeeee.....eeeeee........eee...ee.....eeeeeeee...........eeeeeee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5utf E    2 SVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  210
                                   |12        22     |||29        39        49        59        69        79        89      | 98       107       117       127       137       147       157       167       177       187       197       207   
                                   9|              27A||                                                                  95A        106A                                                                                                        
                                   11               27B|                                                                                                                                                                                         
                                                     27C

Chain G from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eee.....eee..hhhhhh...................eee.....eeee...hhhhhhhhhhhhhhhhhh......hhhhh...eee.........eeeeeeeee......eeeee..ee...eee...eee......................eee....eeeeee.......eeee..eeee.............eee.........eeee.........eeee....eeeeeee.....eeee.......eeee.........eeeeeehhhhhhhhhhhhhhhhh......eeee......hhhhheeeeee..eeeeee......eee.....eeeeeeeee.....................eeeeeeeeeeeeee...eeeeee....hhhhhhhhhh.eeeeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5utf G   31 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNMRGEMKNCSFNMTTELRDKKQKVYSLFWRLDVVQINEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPMNMTRKSIRIGPGQAFYALGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRMKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKR  503
                                    40        50        60        70        80        90       100       110       120       130      |152       162       172       182  ||   196       206       216       226       236       246       256       266       276       286       296       306  ||   318   |   327       337       347       357       367       377       387       397||     419       429       439       449       464       474       484       494         
                                                                                                                                    137|                                185|                                                                                                                    309|      321A                                                                          398|                                            458|                                       
                                                                                                                                     150                                 190                                                                                                                     312                                                                                     411                                             464

Chain H from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee.......eeeeee.......eeeeee.....eee...hhh.eeeeee....eeeeee...hhhhheeeeeeeeeeeeee........eeeeee.......eeeee........eeeee......eeeeeeeeeee.....eeee........eee...ee.....eeeeeeeeee........eeeeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5utf H    1 QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  211
                                    10        20        30        40        50        60        70        80  |||   87        97   |||100G||||||100Q|      109       119      |133       143       153       163       173       183       193       203        
                                                                                                            82A||               100A|||||100J||||||||                       126|                                                                                
                                                                                                             82B|                100B|||||100K|||||||                        131                                                                                
                                                                                                              82C                 100C|||||100L||||||                                                                                                           
                                                                                                                                   100D|||||100M|||||                                                                                                           
                                                                                                                                    100E|||| 100N||||                                                                                                           
                                                                                                                                     100F|||  100O|||                                                                                                           
                                                                                                                                      100G||   100P||                                                                                                           
                                                                                                                                       100H|    100Q|                                                                                                           
                                                                                                                                        100I     100R

Chain L from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeeeee..........eeeee.....eeeee.............eee.........eeeeee........eeeee............eeeeeeee..........eee..hhhhhh...eeeeeeee.......eeeeee..ee....eee...ee.....eeeeeeeeehhhhhh....eeeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5utf L    8 TFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT  210
                             ||     18        28        38        48        58       67A||      75        85        95|||    102       112       122       132       142       152       162       172       182       192       202        
                             9|                                                      67A||                          95A||                                                                                                                   
                             11                                                       67B|                           95B|                                                                                                                   
                                                                                       67C                            95C

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5UTF)

(no "CATH Domain" information available for 5UTF)

(no "Pfam Domain" information available for 5UTF)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Ala E:127 - Asn E:128	[ RasMol ]
		Cys E:27C - Cys E:28	[ RasMol ]
		Gln L:109 - Pro L:110	[ RasMol ]
		Glu D:148 - Pro D:149	[ RasMol ]
		Glu H:146 - Pro H:147	[ RasMol ]
		Gly G:312 - Pro G:313	[ RasMol ]
		Gly H:188 - Thr H:189	[ RasMol ]
		Phe D:146 - Pro D:147	[ RasMol ]
		Phe H:144 - Pro H:145	[ RasMol ]
		Tyr E:140 - Pro E:141	[ RasMol ]
		Tyr L:141 - Pro L:142	[ RasMol ]

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	Q2N0S6_9HIV1 \| Q2N0S6	:	5v7j 5v8l 5v8m 5viy 5vj6 5w6d
UniProtKB/TrEMBL
	Q2N0S6_9HIV1 \| Q2N0S6	:	3j5m 4nco 4zmj 5aco 5c7k 5cez 5cjx 5d9q 5fyl 5i8h 5js9 5jsa 5t3s 5t3x 5t3z 5thr 5u1f 5uty

(no "Related Entries Specified in the PDB File" available for 5UTF)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 59)

Sites (21, 21)

SS Bonds (22, 22)

Cis Peptide Bonds (11, 11)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File