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(-) Description

Title :  CRYSTAL STRUCTURE OF BROADLY AND POTENTLY NEUTRALIZING ANTIBODY VRC06B IN COMPLEX WITH HIV-1 CLADE A/E STRAIN 93TH057 GP120
 
Authors :  T. Zhou, S. Srivatsan, P. D. Kwong
Date :  16 Jan 15  (Deposition) - 29 Apr 15  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.39
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,L
Biol. Unit 1:  G,H,L  (1x)
Biol. Unit 2:  A,B,C  (1x)
Biol. Unit 3:  D,E,F  (1x)
Keywords :  Antibody, Hiv-1, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Wu, Z. Zhang, C. A. Schramm, M. G. Joyce, Y. Do Kwon, T. Zhou, Z. Sheng B. Zhang, S. O'Dell, K. Mckee, I. S. Georgiev, G. Y. Chuang, N. S. Longo, R. M. Lynch, K. O. Saunders, C. Soto, S. Srivatsan, Y. Yang, R. T. Bailer M. K. Louder, J. C. Mullikin, M. Connors, P. D. Kwong, J. R. Mascola, L. Shapiro
Maturation And Diversity Of The Vrc01-Antibody Lineage Over 15 Years Of Chronic Hiv-1 Infection.
Cell V. 161 470 2015
PubMed-ID: 25865483  |  Reference-DOI: 10.1016/J.CELL.2015.03.004

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN GP160,ENVELOPE GLYCOPROTEIN GP160
    Chains: G, A, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Atcc Number: CRL-3022
    Expression System Cell Line: HEK 293 GNTI-
    Expression System Common: HUMAN
    Expression System Plasmid: PVRC8400
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 43-122, 201-303, 325-486
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Strain: 93TH057
 
Molecule 2 - HEAVY CHAIN OF ANTIBODY VRC06B
    Chains: H, B, E
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Common: HUMAN
    Expression System Plasmid: PVRC8400
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - LIGHT CHAIN OF ANTIBODY VRC06B
    Chains: L, C, F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Common: HUMAN
    Expression System Plasmid: PVRC8400
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHL
Biological Unit 1 (1x):       GHL
Biological Unit 2 (1x): ABC      
Biological Unit 3 (1x):    DEF   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 27)

Asymmetric Unit (2, 27)
No.NameCountTypeFull Name
1FUC3Ligand/IonALPHA-L-FUCOSE
2NAG24Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1FUC1Ligand/IonALPHA-L-FUCOSE
2NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 10)
No.NameCountTypeFull Name
1FUC1Ligand/IonALPHA-L-FUCOSE
2NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (2, 8)
No.NameCountTypeFull Name
1FUC1Ligand/IonALPHA-L-FUCOSE
2NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:234 , THR A:236 , SER A:274 , NAG A:504binding site for Mono-Saccharide NAG A 501 bound to ASN A 234
02AC2SOFTWAREASN A:229 , LYS A:231 , ASN A:241 , THR A:336binding site for Mono-Saccharide NAG A 502 bound to ASN A 241
03AC3SOFTWAREPRO A:212 , ASN A:262 , ASN A:377 , CYS A:378 , ARG A:379 , VAL A:446 , SER A:447 , NAG A:507binding site for Mono-Saccharide NAG A 503 bound to ASN A 262
04AC4SOFTWAREASN A:276 , NAG A:501 , GLY C:29 , ASN C:30binding site for Mono-Saccharide NAG A 504 bound to ASN A 276
05AC5SOFTWAREGLU A:268 , ASN A:289 , GLN A:344binding site for Mono-Saccharide NAG A 505 bound to ASN A 289
06AC6SOFTWAREASN A:386 , GLN D:114 , GLN D:117binding site for Mono-Saccharide NAG A 506 bound to ASN A 386
07AC7SOFTWAREASN A:262 , ASN A:448 , NAG A:503binding site for Mono-Saccharide NAG A 507 bound to ASN A 448
08AC8SOFTWAREASN C:102 , ARG C:103 , THR C:109binding site for Poly-Saccharide residues NAG C 301 through FUC C 303 bound to ASN C 102
09AC9SOFTWAREASN D:234 , THR D:236 , GLY D:237 , LEU D:277 , NAG D:503binding site for Mono-Saccharide NAG D 501 bound to ASN D 234
10AD1SOFTWAREPRO D:212 , ASN D:262 , VAL D:446 , SER D:447binding site for Mono-Saccharide NAG D 502 bound to ASN D 262
11AD2SOFTWAREASN D:276 , NAG D:501 , GLY F:29binding site for Mono-Saccharide NAG D 503 bound to ASN D 276
12AD3SOFTWAREMET D:373 , ASN D:386 , THR D:388binding site for Mono-Saccharide NAG D 504 bound to ASN D 386
13AD4SOFTWAREGLN D:362 , ASN D:392binding site for Mono-Saccharide NAG D 505 bound to ASN D 392
14AD5SOFTWAREASN F:102 , ARG F:103binding site for Poly-Saccharide residues NAG F 301 through FUC F 303 bound to ASN F 102
15AD6SOFTWAREASN G:234 , THR G:236 , SER G:274binding site for Mono-Saccharide NAG G 501 bound to ASN G 234
16AD7SOFTWAREHIS G:85 , GLU G:87 , ASN G:229 , ASN G:241binding site for Mono-Saccharide NAG G 502 bound to ASN G 241
17AD8SOFTWAREPRO G:212 , ASN G:262 , ASN G:377 , ARG G:379 , VAL G:446 , SER G:447binding site for Mono-Saccharide NAG G 503 bound to ASN G 262
18AD9SOFTWAREASN G:276 , GLY L:29 , PHE L:90binding site for Mono-Saccharide NAG G 504 bound to ASN G 276
19AE1SOFTWAREGLN G:114 , MET G:373 , ASN G:386 , THR G:388binding site for Mono-Saccharide NAG G 505 bound to ASN G 386
20AE2SOFTWARELYS G:202 , GLN G:362 , THR G:388 , ASN G:392binding site for Mono-Saccharide NAG G 506 bound to ASN G 392
21AE3SOFTWARETHR C:68 , ASP C:69 , ASN L:102 , THR L:109binding site for Poly-Saccharide residues NAG L 301 through FUC L 303 bound to ASN L 102

(-) SS Bonds  (36, 36)

Asymmetric Unit
No.Residues
1A:54 -A:74
2A:119 -A:205
3A:218 -A:247
4A:228 -A:239
5A:296 -A:331
6A:378 -A:445
7A:385 -A:418
8B:22 -B:92
9B:99 -B:102
10B:147 -B:203
11C:23 -C:87
12C:134 -C:194
13D:54 -D:74
14D:119 -D:205
15D:218 -D:247
16D:228 -D:239
17D:296 -D:331
18D:378 -D:445
19D:385 -D:418
20E:22 -E:92
21E:99 -E:102
22E:147 -E:203
23F:23 -F:87
24F:134 -F:194
25G:54 -G:74
26G:119 -G:205
27G:218 -G:247
28G:228 -G:239
29G:296 -G:331
30G:378 -G:445
31G:385 -G:418
32H:22 -H:92
33H:99 -H:102
34H:147 -H:203
35L:23 -L:87
36L:134 -L:194

(-) Cis Peptide Bonds  (13, 13)

Asymmetric Unit
No.Residues
1Phe H:153 -Pro H:154
2Glu H:155 -Pro H:156
3Ser L:7 -Pro L:8
4Tyr L:140 -Pro L:141
5Phe B:153 -Pro B:154
6Glu B:155 -Pro B:156
7Ser C:7 -Pro C:8
8Tyr C:140 -Pro C:141
9Gly E:76G-Val E:77
10Phe E:153 -Pro E:154
11Glu E:155 -Pro E:156
12Ser F:7 -Pro F:8
13Tyr F:140 -Pro F:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XNZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XNZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4XNZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhee......eeee....ee......hhhhhhhhhhhhhhhhh....ee.....................eee....eeeeee.........ee..eeee.............eee.........eee..........eeeeeeeeeeeeeee.....eeeeeehhhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee........ee...........eeeeeee..eee......eee........eeeeeeeeeeeeeee.......eeeeee....hhhhhhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xnz A  47 DADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNTCIGNETMKGNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE 492
                                    56        66        76        86        96       106       116       199       209       219       229       239       249       259       269       279       289       299||     333       343       353 ||    364       374       384       394       411       421       431       441       451       461       471       481       491 
                                                                                                       124|                                                                                                   300|                           355|                                           403|                                                                                 
                                                                                                        198                                                                                                    325                            357                                            411                                                                                 


Chain B from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee...eee....eeeeeeee........eeeeeeee...eeeeeeeee.....eee.......eeeeeee......eeeeeeee.......eeeeeeee...........eee....eeeee........eeeee.......eeeeeeee.......eeee........eee...ee.....eeeeeeeee..........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xnz B   4 LVESGSAMRKPGSSVKISCRASGFNFREYSIHWVRLIPGRGLEWMGWIKGMWGAVNYARQLQGRVSMTRQLSQDPDWGVAYLDFSGLTSGDTGEYFCVRKGPSCPHCGDFHWQHWGQGTLVVVSTASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 221
                                    13        23        33        43       52A        62        72   |||||78    ||| 85        95       105       115       125       135|      149       159       169       179       189       199       209       219  
                                                                           52A                     76C||||    82A||                                                  135|                                                                                 
                                                                                                    76D|||     82B|                                                   140                                                                                 
                                                                                                     76E||      82C                                                                                                                                       
                                                                                                      76F|                                                                                                                                                
                                                                                                       76G                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeee......ee...............eeeeee..eeeeee.........eeeeee..ee...eeeee..........ee..........eeeeee...........ee.ee..ee....eee...............eeeeeehhhhh.....ee........ee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xnz C   1 EIVLTQSPGTLSVSPGERATLFCKASQGGNSLSWYQKRRGQPPRLLIYDTSRRASGIPDRFVGSGSGTDFSLTITKVDRDDFALYFCQQFEFFGLGTALEINRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVCEVTHQGLSSPVTKSFNRGE 213
                                    10        20        30        40        50        60        70        80        90       100  ||   115       125       135       145       155       165       175       185     ||197       207      
                                                                                                                                103|                                                                               191|                   
                                                                                                                                 109                                                                                194                   


Chain D from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee.....eeee.......hhhhhhhhhhhee......eeee....ee.hhhhhhhhhhhhhhhhhhhhhh....eee....eee.............eee....eeeeee.........ee..eeee.............eee.........eeee.........eeeeeeeeeeeeeee....eeeee.hhhhhhhhhhhhhh.........eeee............eeeee..eeeee.........eeeeeee.eee......eee........eeeeeeeeeeee..........eeee......hhhhhhh....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xnz D  44 VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE 492
                                    53        63        73        83        93       103       113       123||     206       216       226       236       246       256       266       276       286       296    || 331       341       351   ||  362       372       382       392||     422       432       442       452       462       472       482       492
                                                                                                          124|                                                                                                    301|                         355|                                 393|                                                                              
                                                                                                           198                                                                                                     327                          357                                  414                                                                              


Chain E from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eee....eeeeeee....hhhh.eeeeeeee...eeeeeeeee.....eee.hhhh..eeeee........eeeeee..hhhhheeeeeeee...........eeee...eeeee........eeeee.......eeeeeeeeee.................eee..........eeeeeeeeehhhhh.....eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xnz E   4 LVESGSAMRKPGSSVKISCRASGFNFREYSIHWVRLIPGRGLEWMGWIKGMWGAVNYARQLQGRVSMTRQLSPDWGVAYLDFSGLTSGDTGEYFCVRKGPSCPHCGDFHWQHWGQGTLVVVSTASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 221
                                    13        23        33        43       52A        62        72 |||||  80  |||   87        97       107       117       127       141       151       161       171       181       191       201       211       221
                                                                           52A                    74||||    82A||                                                  135|                                                                                 
                                                                                                  76D|||     82B|                                                   140                                                                                 
                                                                                                   76E||      82C                                                                                                                                       
                                                                                                    76F|                                                                                                                                                
                                                                                                     76G                                                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....eeee.....ee...ee.......eeeee......eeeee...ee.......eeeeee..eeeeee.........eeeeee..ee...eeeee..........ee..hhhhhh..eeeeee..........ee..ee..ee.....eee.............eeeeeeehhhhh...eeeeeee.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xnz F   2 IVLTQSPGTLSVSPGERATLFCKASQGGNSLSWYQKRRGQPPRLLIYDTSRRASGIPDRFVGSGSGTDFSLTITKVDRDDFALYFCQQFEFFGLGTALEINRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG 212
                                    11        21        31        41        51        61        71        81        91       101 ||    116       126       136       146       156       166       176       186       196       206      
                                                                                                                               103|                                                                                                       
                                                                                                                                109                                                                                                       


Chain G from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeee.......hhhhhhh...eee......eeee....ee.hhhhhhhhhhhhhhhhhhhhhh....eee....eee............eeee....eeeeee.........ee..eeee.............eee.........eeee.........eeeeeeeeeeeeeee........eeeehhhhhhhhhhhhhhhhhh.....eeee......hhhhhheeeee..eeeee......................eee..eee......eee........eeeeeeeeeeeeeee.....eeeeee....hhhhhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xnz G  44 VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNTCIGNETNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANSNETFRPGGGNIKDNWRSELYKYKVVQIE 492
                                    53        63        73        83        93       103       113       123||     206       216       226       236       246       256       266       276       286       296    || 329       339       349     ||360       370       380       390       400|      420       430       440       450       460||     472       482       492
                                                                                                          124|                                                                                                    301|                           355|                                        400|                                               461|                            
                                                                                                           198                                                                                                     325                            357                                         411                                                464                            


Chain H from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee...eee....eeeeeee.........eeeeeeee...eeeeeeeee.....eee.hhhh..eeeee.........eeeeeee..hhhhheeeeeee..............ee...eeeee........eeeee.......eeeeeeeeee.....eeee........eee...ee.....eeeeeeeee..........eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xnz H   4 LVESGSAMRKPGSSVKISCRASGFNFREYSIHWVRLIPGRGLEWMGWIKGMWGAVNYARQLQGRVSMTRQLSDDPDWGVAYLDFSGLTSGDTGEYFCVRKGPSCPHCGDFHWQHWGQGTLVVVSTASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 221
                                    13        23        33        43       52A        62        72 |||||||78    ||| 85        95       105       115       125       135|      149       159       169       179       189       199       209       219  
                                                                           52A                    74||||||    82A||                                                  135|                                                                                 
                                                                                                  76B|||||     82B|                                                   140                                                                                 
                                                                                                   76C||||      82C                                                                                                                                       
                                                                                                    76D|||                                                                                                                                                
                                                                                                     76E||                                                                                                                                                
                                                                                                      76F|                                                                                                                                                
                                                                                                       76G                                                                                                                                                


Chain L from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....eeee.....eeee.ee.......eeeee......eeeee...ee.......eeeeee..eeeeee.........eeeeee..ee...eeeee..........ee..hhhhhh..eeeeee..............ee........eee...............eeeeeehhhhh...eee.ee........ee..ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xnz L   2 IVLTQSPGTLSVSPGERATLFCKASQGGNSLSWYQKRRGQPPRLLIYDTSRRASGIPDRFVGSGSGTDFSLTITKVDRDDFALYFCQQFEFFGLGTALEINRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE 213
                                    11        21        31        41        51        61        71        81        91       101 ||    116       126       136       146       156       166       176       186       196       206       
                                                                                                                               103|                                                                                                        
                                                                                                                                109
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XNZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XNZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XNZ)

(-) Gene Ontology  (40, 59)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IGHG1_HUMAN | P01857: 1aj7 1aqk 1axs 1bey 1d5b 1d5i 1d6v 1dfb 1dn2 1e4k 1fc1 1fc2 1fcc 1gaf 1h3t 1h3u 1h3v 1h3w 1h3x 1h3y 1hkl 1hzh 1i7z 1l6x 1n7m 1op3 1oqo 1oqx 1pg7 1t83 1t89 1vge 2dts 2gj7 2i5y 2iwg 2j6e 2jb5 2jb6 2o5x 2o5y 2o5z 2osl 2qad 2ql1 2qqk 2qql 2qqn 2qr0 2r56 2rcj 2rcs 2vxq 2wah 3agv 3ave 3ay4 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3c2s 3cfj 3cfk 3csy 3d0l 3d0v 3d6g 3d85 3dj9 3dnk 3do3 3dro 3drq 3dvg 3dvn 3eyf 3eyo 3eyq 3fjt 3mcl 3o11 3ry6 3s7g 3sgj 3sgk 3tv3 3twc 3tyg 3u0w 3u7w 3u7y 3v7m 3v8c 3v95 3wjj 3wjl 3wkn 3wn5 4acp 4b7i 4bm7 4bsv 4bsw 4byh 4cdh 4d9q 4d9r 4dag 4dz8 4eow 4hix 4j12 4ku1 4lld 4llm 4llq 4n0u 4nqs 4nqt 4nqu 4nwt 4nwu 4o4y 4o51 4q6y 4q74 4q7d 4w4n 4w4o 4wi2 4wi3 4wi4 4wi5 4wi6 4wi7 4wi8 4wi9 4x4m 4x98 4x99 4xmp 4xny 4xxd 4zne 5bw7 5c7k 5d4q 5d6d 5di8 5dj0 5dj2 5dj6 5dj8 5dja 5djc 5djd 5djx 5djy 5djz 5dk0 5dk2 5dvk 5dvl 5dvm 5dvn 5dvo 5gsq 5hsf 5hy9 5hye 5hyf 5hyi 5iq7 5iq9 5iw3 5iw6 5jih 5jii 5jik 5k33 5k8d 5kwg 5m3v 5v43 5v4e
        IGKC_HUMAN | P01834: 1a4j 1a4k 1cly 1d5b 1d5i 1d6v 1dfb 1gaf 1hez 1hkl 1hzh 1i7z 1mim 1n0x 1om3 1op3 1op5 1ucb 2ny7 2o5x 2o5y 2o5z 2qqk 2qql 2qqn 2qsc 2r56 2rfx 2vxq 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3cfj 3cfk 3csy 3d0l 3d85 3dvg 3dvn 3eyf 3eyo 3eyq 3iu3 3o11 3qct 3qcu 3qcv 3ru8 3u0w 3u7w 3u7y 3vh8 3wuw 3x11 3x12 4d3c 4d9r 4hix 4nm4 4nm8 4xmp 4xny 4xxd 4ydv 5b38 5b39 5c7k 5esv 5esz 5ewi 5veb 5viy
UniProtKB/TrEMBL
        Q0ED31_9HIV1 | Q0ED31: 3ngb 3se8 3se9 3tgt 3u7y 4dko 4dkp 4dkq 4dkr 4dku 4dkv 4dvs 4dvt 4dvv 4dvw 4dvx 4h8w 4i54 4jb9 4jdt 4jkp 4jpv 4jpw 4lsp 4lsq 4lsr 4lsu 4olu 4olv 4olw 4olx 4oly 4olz 4om0 4om1 4p9h 4rfn 4rfo 4rz8 4xvt 4ydj 4ydk 4ydl 4yfl

(-) Related Entries Specified in the PDB File

4jb9 CLONAL VARIANT OF VRC06B
4xmp
4xny