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(-) Description

Title :  CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY CH03, ISOLATED FROM DONOR CH0219, IN COMPLEX WITH SCAFFOLDED TRIMERIC HIV-1 ENV V1V2 DOMAIN FROM THE CLADE C SUPERINFECTING STRAIN OF DONOR CAP256.
 
Authors :  J. Gorman, M. Yang, P. D. Kwong
Date :  17 Nov 15  (Deposition) - 16 Dec 15  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.11
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,L
Keywords :  Hiv-1, Env, V1V2, Ch0219, Chavi, Scaffold, Cap256, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Gorman, C. Soto, M. M. Yang, T. M. Davenport, M. Guttman, R. T. Bailer M. Chambers, G. Y. Chuang, B. J. Dekosky, N. A. Doria-Rose, A. Druz, M. J. Ernandes, I. S. Georgiev, M. C. Jarosinski, M. G. Joyce, T. M. Lemmin, S. Leung, M. K. Louder, J. R. Mcdaniel, S. Narpala, M. Pancera, J. Stuckey, X. Wu, Y. Yang, B. Zhang, T. Zhou, N. C. Program, J. C. Mullikin, U. Baxa, G. Georgiou, A. B. Mcdermott, M. Bonsignori, B. F. Haynes, P. L. Moore, L. Morris, K. K. Lee, L. Shapiro, J. R. Mascola P. D. Kwong
Structures Of Hiv-1 Env V1V2 With Broadly Neutralizing Antibodies Reveal Commonalities That Enable Vaccine Design.
Nat. Struct. Mol. Biol. V. 23 81 2016
PubMed-ID: 26689967  |  Reference-DOI: 10.1038/NSMB.3144

(-) Compounds

Molecule 1 - CH03 HEAVY CHAIN
    Chains: A, C, H
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: EXPI293
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - CH03 LIGHT CHAIN
    Chains: B, D, L
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: EXPI293
    Expression System Taxid: 9606
    Gene: IGKC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, ENVELOPE GLYCOPROTEIN GP160
    Chains: E, F, G
    EC Number: 4.6.1.12, 4.6.1.12
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: EXPI293
    Expression System Taxid: 9606
    Gene: ISPF, HI_0671, ENV
    Organism Scientific: HAEMOPHILUS INFLUENZAE, HUMAN IMMUNODEFICIENCY VIRUS 1, HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM 11121 / KW20 / RD)
    Organism Taxid: 71421, 11676
    Strain: ATCC 51907 / DSM 11121 / KW20 / RD
    Synonym: MECPS,ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 13-1 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 18 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 19 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 21 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 25 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 6 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 7 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 8 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 9 ENV POLYPROTEIN,ENVELOPE GLYCOPROTEIN GP160,MECPS

 Structural Features

(-) Chains, Units

  123456789
Asymmetric/Biological Unit : ABCDEFGHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 64)

Asymmetric/Biological Unit (4, 64)
No.NameCountTypeFull Name
1BMA10Ligand/IonBETA-D-MANNOSE
2MAN28Ligand/IonALPHA-D-MANNOSE
3NAG23Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN3Ligand/IonZINC ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP E:120 , HIS E:122 , HIS E:207binding site for residue ZN E 422
02AC2SOFTWAREASP F:120 , HIS F:122 , HIS F:207binding site for residue ZN F 421
03AC3SOFTWAREASP G:120 , HIS G:122binding site for residue ZN G 421
04AC4SOFTWAREMET A:51 , ASN A:53 , GLY A:55 , ARG A:71 , ASN E:130 , GLU E:190 , NAG E:416binding site for Poly-Saccharide residues NAG E 403 through MAN E 407 bound to ASN E 130
05AC5SOFTWAREASN B:152 , LYS B:190 , ASN B:210 , ASN E:137 , ASN E:139 , ARG H:58 , ILE H:100 , ASP H:100A , ASP H:100B , GLY H:100D , TRP H:100N , GLN L:27 , SER L:27A , HIS L:29 , TYR L:32 , TYR L:91 , GLY L:92 , TYR L:96binding site for Poly-Saccharide residues NAG E 408 through MAN E 414 bound to ASN E 139
06AC6SOFTWAREGLU A:30 , ASN A:31 , ASN E:156 , TYR E:173 , LEU E:175binding site for Poly-Saccharide residues NAG E 401 through NAG E 402 bound to ASN E 156
07AC7SOFTWARETRP A:52A , GLY A:55 , ASP A:56 , ARG A:58 , ASP A:61 , SER A:62 , ARG A:64 , THR A:99 , ILE A:100 , TYR A:100G , SER A:100J , GLU B:1 , SER B:94 , PRO B:95 , ASN E:160 , LYS E:171 , NAG E:403binding site for Poly-Saccharide residues NAG E 415 through MAN E 421 bound to ASN E 160
08AC8SOFTWAREASN C:53 , GLY C:54 , ASN F:130 , MAN F:417binding site for Poly-Saccharide residues NAG F 404 through BMA F 406 bound to ASN F 130
09AC9SOFTWAREARG A:58 , ILE A:100 , ASP A:100A , ASP A:100B , GLN A:100C , GLY A:100D , TRP A:100N , HIS B:29 , TYR B:32 , TYR B:91 , GLY B:92 , TYR B:96 , ASN F:139binding site for Poly-Saccharide residues NAG F 407 through MAN F 413 bound to ASN F 139
10AD1SOFTWAREGLU C:30 , GLU E:164 , ASN F:156 , TYR F:173binding site for Poly-Saccharide residues NAG F 401 through BMA F 403 bound to ASN F 156
11AD2SOFTWAREASN C:52 , TRP C:52A , ASN C:53 , GLY C:55 , ASP C:56 , THR C:99 , ILE C:100 , TYR C:100G , SER C:100J , GLU D:1 , SER D:94 , SER F:158 , PHE F:159 , ASN F:160 , NAG F:405 , SER H:132binding site for Poly-Saccharide residues NAG F 414 through MAN F 420 bound to ASN F 160
12AD3SOFTWAREASN G:130 , GLU G:190 , MAN G:417 , ASN H:53 , THR H:57 , ARG H:71binding site for Poly-Saccharide residues NAG G 402 through MAN G 407 bound to ASN G 130
13AD4SOFTWAREARG C:58 , ILE C:100 , ASP C:100A , ASP C:100B , GLN C:100C , GLY C:100D , TRP C:100N , PRO D:30 , TYR D:32 , TYR D:91 , GLY D:92 , SER D:94 , TYR D:96 , ASN G:139binding site for Poly-Saccharide residues NAG G 408 through MAN G 413 bound to ASN G 139
14AD5SOFTWAREASN G:156 , TYR G:173 , ALA G:174 , LEU G:175 , GLU H:30binding site for Mono-Saccharide NAG G 401 bound to ASN G 156
15AD6SOFTWARETHR A:131 , LYS B:207 , ASN G:160 , LYS G:171 , MAN G:407 , TRP H:52A , GLY H:55 , ARG H:58 , THR H:99 , ILE H:100 , TYR H:100G , SER H:100J , GLU L:1 , SER L:94binding site for Poly-Saccharide residues NAG G 414 through MAN G 420 bound to ASN G 160

(-) SS Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:92
2A:140 -A:196
3B:23 -B:88
4B:134 -B:194
5C:22 -C:92
6C:140 -C:196
7D:23 -D:88
8D:134 -D:194
9E:126 -E:196
10E:131 -E:157
11F:126 -F:196
12F:131 -F:157
13G:126 -G:196
14G:131 -G:157
15H:22 -H:92
16H:140 -H:196
17L:23 -L:88
18L:134 -L:194

(-) Cis Peptide Bonds  (21, 21)

Asymmetric/Biological Unit
No.Residues
1Phe A:146 -Pro A:147
2Glu A:148 -Pro A:149
3Ser B:7 -Pro B:8
4Ser B:94 -Pro B:95
5Tyr B:140 -Pro B:141
6Phe C:146 -Pro C:147
7Glu C:148 -Pro C:149
8Ser D:7 -Pro D:8
9Ser D:94 -Pro D:95
10Tyr D:140 -Pro D:141
11Asp E:221 -Ile E:222
12Gly E:323 -Leu E:324
13Phe F:124 -Gly F:125
14Ile G:138 -Asn G:139
15Glu G:153 -Ile G:154
16Ala G:267 -Pro G:268
17Phe H:146 -Pro H:147
18Glu H:148 -Pro H:149
19Ser L:7 -Pro L:8
20Ser L:94 -Pro L:95
21Tyr L:140 -Pro L:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ESV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ESV)

(-) Exons   (0, 0)

(no "Exon" information available for 5ESV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee....eeeeeeeee..hhhhh.eeeeee.....eeeeeee......eee........eeeee....eeeeeee..hhhhheeeeeee...eee.....eee.........ee...eeeee........eeeee.......eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh.eeeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv A    1 EVQLVESGGGVVRPGGSLRLSCAASGFIFENYGLTWVRQVPGKGLHWVSGMNWNGGDTRYADSVRGRFSMSRDNSNNIAYLQMKNLRVDDTALYYCARGTDYTIDDQGIFYKGSGTFWYFDLWGRGTLVTVSSASTKGPSVFPLAPSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||||||100P       110       120      |133       143       153       163       173       183       193       203       213
                                                                              52A                            82A||               100A|||||100J||||||                        127|                                                                                  
                                                                                                              82B|                100B|||||100K|||||                         131                                                                                  
                                                                                                               82C                 100C|||||100L||||                                                                                                              
                                                                                                                                    100D|||||100M|||                                                                                                              
                                                                                                                                     100E|||| 100N||                                                                                                              
                                                                                                                                      100F|||  100O|                                                                                                              
                                                                                                                                       100G||   100P                                                                                                              
                                                                                                                                        100H|                                                                                                                     
                                                                                                                                         100I                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeeeeeee....eeeeee......eeeee...ee.......eeeeeeeeeeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee....eeeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeeee......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv B    1 EIVLTQSPATLSLSPGERATLSCRASQSVHPKYFAWYQQKPGQSPRLLIYSGSTRAAGIADRFSGGGSGIHFTLTITRVEPEDFAVYFCQQYGGSPYTFGQGTKVELRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG  212
                                    10        20       |29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209   
                                                     27A                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee....eeeeeeeee..hhhhh.eeeeee.....eeeeeee.......ee.......eeeeeehhh.eeeeeee.......eeeeeee...eee.....eee.........ee...eeeee........eeeee.......eeeeeeeeeee.....eeee........eee..........eeeeeeeeee..........eeeehhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv C    1 EVQLVESGGGVVRPGGSLRLSCAASGFIFENYGLTWVRQVPGKGLHWVSGMNWNGGDTRYADSVRGRFSMSRDNSNNIAYLQMKNLRVDDTALYYCARGTDYTIDDQGIFYKGSGTFWYFDLWGRGTLVTVSSASTKGPSVFPLAPSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||||||100P       110       120      |133       143       153       163       173       183       193       203       213
                                                                              52A                            82A||               100A|||||100J||||||                        127|                                                                                  
                                                                                                              82B|                100B|||||100K|||||                         131                                                                                  
                                                                                                               82C                 100C|||||100L||||                                                                                                              
                                                                                                                                    100D|||||100M|||                                                                                                              
                                                                                                                                     100E|||| 100N||                                                                                                              
                                                                                                                                      100F|||  100O|                                                                                                              
                                                                                                                                       100G||   100P                                                                                                              
                                                                                                                                        100H|                                                                                                                     
                                                                                                                                         100I                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...........eeeeeeeeeee....eeeeee......eeeee...ee.......eeeeeeeeeeeeee...hhhhh.eeeeee......ee...ee..........eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee........ee............eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv D    1 EIVLTQSPATLSLSPGERATLSCRASQSVHPKYFAWYQQKPGQSPRLLIYSGSTRAAGIADRFSGGGSGIHFTLTITRVEPEDFAVYFCQQYGGSPYTFGQGTKVELRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20       |29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                     27A                                                                                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......eee.ee.........eeeeeeeee.....eeeeeeeeee...eee....eeee.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh.eeeeeeeeeeee.....hhhhhhhhhhhh..hhh.eeeeeee...eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv E  111 SLIRIGHGFDVHAFGCVTLNCSDAKVNINREEIKNCSFNATTELRDKKKKEYALFYRLDIVPLNNSEYRLINCNGGDVALHALTDAILGAAALGDIGNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPPHIDAMRAKIAEDLQCDIEQVNVKATTTEIACEAVALLIRQGLEV  326
                                   120       130       151       161       171       181   ||  193   ||  206       216      |237       247       257       267||     280       290       300|      320      
                                                      139|                               185|      197|                   223|                              268|                         300|               
                                                       151                                188       201                    235                               272                          311               


Chain F from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee.....eeeee........eeeeeeeee.....eeeeeeeeee...eee....eee.....hhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhhhhh..eeeeeeeeeee.....hhhhhhhhhhhhh..hhh.eeeeee........eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv F  112 LIRIGHGFDVHAFGCVTLNCSDAKVNINEIKNCSFNATTELRDKKKKEYALFYRLDIVPLNSEYRLINCNGDVALHALTDAILGAAALGDIGKLFPADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPPHIDAMRAKIAEDLQCDIEQVNVKATTTEGRQEGIACEAVALLIRQGLEV  326
                                   121       131       154       164       174       184||     197|      211       221     ||239       249       259       272       282       292       307       317         
                                                     139|                             185|     197|                      227|                             268|                         300|                    
                                                      153                              189      202                       236                              272                          306                    


Chain G from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee.......ee..............eeeeeeee.....eeeeeeeeehhhhh.....ee.......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh.eeeeeeeeeeee.....hhhhhhhhhhhhhh.hhh.eeeeeee...........eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv G  111 SLIRIGHGFDVHAFGCVTLNCSDAKVNINTREEIKNCSFNATTELRDKKKKEYALFYRLDIVPLNSEYRLINCNSGGDVALHALTDAILGAAALGDIGKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTQEGIACEAVALLIRQGLEV  326
                                   120       130       150       160       170       180    || 193   ||  205       215       235       245       255       265  ||   277       287       297       309       319       
                                                      139|                                185|     197|                    223|                               268|                               305|                  
                                                       150                                 189      200                     234                                271                                308                  


Chain H from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeee........eeeeeee...eee.....eee..............eeeee........eeeee......eeeeeeeeeee.....eeee.........ee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv H    1 EVQLVESGGGVVRPGGSLRLSCAASGFIFENYGLTWVRQVPGKGLHWVSGMNWNGGDTRYADSVRGRFSMSRDNSNNIAYLQMKNLRVDDTALYYCARGTDYTIDDQGIFYKGSGTFWYFDLWGRGTLVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||||||100P       110       120      |134       144       154       164       174       184       194       204         
                                                                              52A                            82A||               100A|||||100J||||||                        127|                                                                                 
                                                                                                              82B|                100B|||||100K|||||                         132                                                                                 
                                                                                                               82C                 100C|||||100L||||                                                                                                             
                                                                                                                                    100D|||||100M|||                                                                                                             
                                                                                                                                     100E|||| 100N||                                                                                                             
                                                                                                                                      100F|||  100O|                                                                                                             
                                                                                                                                       100G||   100P                                                                                                             
                                                                                                                                        100H|                                                                                                                    
                                                                                                                                         100I                                                                                                                    


Chain L from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeeeeeee....eeeeee......eeeee...ee.......eeeeeeeeeeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhhhheeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esv L    1 EIVLTQSPATLSLSPGERATLSCRASQSVHPKYFAWYQQKPGQSPRLLIYSGSTRAAGIADRFSGGGSGIHFTLTITRVEPEDFAVYFCQQYGGSPYTFGQGTKVELRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20       |29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                     27A
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ESV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ESV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ESV)

(-) Gene Ontology  (45, 45)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  5esv
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  IGKC_HUMAN | P01834
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  4.6.1.12
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IGKC_HUMAN | P01834: 1a4j 1a4k 1cly 1d5b 1d5i 1d6v 1dfb 1gaf 1hez 1hkl 1hzh 1i7z 1mim 1n0x 1om3 1op3 1op5 1ucb 2ny7 2o5x 2o5y 2o5z 2qqk 2qql 2qqn 2qsc 2r56 2rfx 2vxq 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3cfj 3cfk 3csy 3d0l 3d85 3dvg 3dvn 3eyf 3eyo 3eyq 3iu3 3o11 3qct 3qcu 3qcv 3ru8 3u0w 3u7w 3u7y 3vh8 3wuw 3x11 3x12 4d3c 4d9r 4hix 4nm4 4nm8 4xmp 4xny 4xnz 4xxd 4ydv 5b38 5b39 5c7k 5esz 5ewi 5veb 5viy
        ISPF_HAEIN | P44815: 1jn1 1vh8 1vha 5esz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5ESV)