5UTY - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A STABILIZED DS-SOSIP.MUT4 BG505 GP140 HIV-1 ENV TRIMER, CONTAINING MUTATIONS I201C-P433C (DS), L154M, N300M, N302M, T320L IN COMPLEX WITH HUMAN ANTIBODIES PGT122 AND 35O22 AT 4.1 ANGSTROM

Authors :   K. Xu, G. -Y. Chuang, M. Pancera, P. D. Kwong

Date :   15 Feb 17 (Deposition) - 29 Mar 17 (Release) - 10 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.41

Chains :   Asym. Unit : B,D,E,G,H,L
Biol. Unit 1: B,D,E,G,H,L  (3x)

Keywords :   Hiv-1 Env, Stabilized Env, Near-Native Mimic Of The Viral Spike, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Y. Chuang, H. Geng, M. Pancera, K. Xu, C. Cheng, P. Acharya, M. Chambers, A. Druz, Y. Tsybovsky, T. G. Wanninger, Y. Yang, N. A. Doria-Rose, I. S. Georgiev, J. Gorman, M. G. Joyce, S. O'Dell, T. Zhou, A. B. Mcdermott, J. R. Mascola, P. D. Kwong
Structure-Based Design Of A Soluble Prefusion-Closed Hiv-1 Env Trimer With Reduced Cd4 Affinity And Improved Immunogenicity.
J. Virol. V. 91 2017
PubMed-ID: 28275193 | Reference-DOI: 10.1128/JVI.02268-16

Molecule 1 - HIV-1 BG505 STRAIN ENV GP41
	Chains	:	B
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Fragment	:	UNP RESIDUES 509-661
	Gene	:	ENV
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676
	Synonym	:	ENVELOPE GLYCOPROTEIN GP160

Molecule 2 - 35O22 FAB HEAVY CHAIN
	Chains	:	D
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 3 - 35O22 FAB LIGHT CHAIN
	Chains	:	E
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 4 - HIV-1 BG505 STRAIN ENV GP120
	Chains	:	G
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Fragment	:	UNP RESIDUES 29-505
	Gene	:	ENV
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676
	Synonym	:	ENVELOPE GLYCOPROTEIN GP160

Molecule 5 - PGT122 FAB HEAVY CHAIN
	Chains	:	H
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 6 - PGT122 FAB LIGHT CHAIN
	Chains	:	L
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric Unit	:	B	D	E	G	H	L
Biological Unit 1 (3x)	:	B	D	E	G	H	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 57)

No.	Name	Count	Type	Full Name
1	BMA	5	Ligand/Ion	BETA-D-MANNOSE
2	MAN	16	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	36	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (3, 171)

No.	Name	Count	Type	Full Name
1	BMA	15	Ligand/Ion	BETA-D-MANNOSE
2	MAN	48	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	108	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN B:611 , SER B:613	binding site for Mono-Saccharide NAG B 701 bound to ASN B 611
02	AC2	SOFTWARE	ASN B:618 , GLU E:53 , ARG E:54	binding site for Mono-Saccharide NAG B 702 bound to ASN B 618
03	AC3	SOFTWARE	ASN B:637	binding site for Mono-Saccharide NAG B 703 bound to ASN B 637
04	AC4	SOFTWARE	SER B:528 , ARG D:28 , ASN D:30 , PHE D:31 , HIS D:33 , TRP D:50 , SER D:52 , TYR D:53 , ASP D:56 , ASN D:58 , ARG D:98 , ASP D:99 , GLY D:100 , SER D:100A , THR D:100C , HIS E:93 , ASN E:94 , ASN G:88	binding site for Poly-Saccharide residues NAG G 601 through MAN G 606 bound to ASN G 88
05	AC5	SOFTWARE	ASN G:133 , ARG G:151	binding site for Mono-Saccharide NAG G 607 bound to ASN G 133
06	AC6	SOFTWARE	ASN G:137 , ASN H:58 , ARG H:99 , PHE H:100K , THR H:100L , ASP L:92 , THR L:95B	binding site for Poly-Saccharide residues NAG G 608 through MAN G 611 bound to ASN G 137
07	AC7	SOFTWARE	THR G:135 , ASN G:156 , TYR G:173	binding site for Poly-Saccharide residues NAG G 612 through MAN G 616 bound to ASN G 156
08	AC8	SOFTWARE	GLN G:130 , ASN G:160 , LYS G:169 , LYS G:171	binding site for Poly-Saccharide residues NAG G 617 through NAG G 618 bound to ASN G 160
09	AC9	SOFTWARE	ARG G:192 , ASN G:197	binding site for Poly-Saccharide residues NAG G 619 through NAG G 620 bound to ASN G 197
10	AD1	SOFTWARE	PRO D:72D , VAL D:72E , ASN G:234 , THR G:236 , SER G:274	binding site for Poly-Saccharide residues NAG G 621 through NAG G 622 bound to ASN G 234
11	AD2	SOFTWARE	LYS G:65 , GLU G:211 , ASN G:262 , ASN G:377 , VAL G:446 , SER G:447 , NAG G:651	binding site for Poly-Saccharide residues NAG G 623 through MAN G 628 bound to ASN G 262
12	AD3	SOFTWARE	ASN G:276 , THR G:278 , ASN G:279	binding site for Mono-Saccharide NAG G 629 bound to ASN G 276
13	AD4	SOFTWARE	ASN G:295 , ASN G:332 , SER G:334	binding site for Poly-Saccharide residues NAG G 630 through NAG G 631 bound to ASN G 295
14	AD5	SOFTWARE	ASN G:301 , ILE G:323 , VAL G:442	binding site for Poly-Saccharide residues NAG G 632 through NAG G 633 bound to ASN G 301
15	AD6	SOFTWARE	THR G:297 , ARG G:327 , HIS G:330 , ASN G:332 , THR G:415 , ARG H:100 , ILE H:100A , GLY H:100C , VAL H:100D , SER L:30 , ASN L:51 , PRO L:66 , GLY L:67 , SER L:67A	binding site for Poly-Saccharide residues NAG G 634 through MAN G 643 bound to ASN G 332
16	AD7	SOFTWARE	ASN G:339 , TRP G:395	binding site for Mono-Saccharide NAG G 653 bound to ASN G 339
17	AD8	SOFTWARE	LYS G:351 , ASN G:355	binding site for Mono-Saccharide NAG G 644 bound to ASN G 355
18	AD9	SOFTWARE	ASN G:363 , SER G:364 , SER G:388 , NAG G:647 , NAG G:648 , NAG G:649	binding site for Poly-Saccharide residues NAG G 645 through NAG G 646 bound to ASN G 363
19	AE1	SOFTWARE	ASN G:386 , SER G:388 , NAG G:645 , NAG G:646 , NAG G:649	binding site for Poly-Saccharide residues NAG G 647 through NAG G 648 bound to ASN G 386
20	AE2	SOFTWARE	ASN G:392 , NAG G:645 , NAG G:648	binding site for Poly-Saccharide residues NAG G 649 through NAG G 650 bound to ASN G 392
21	AE3	SOFTWARE	ASN G:262 , PRO G:291 , ASN G:448 , NAG G:623	binding site for Poly-Saccharide residues NAG G 651 through NAG G 652 bound to ASN G 448
22	AE4	SOFTWARE	ASN H:23 , LEU H:77	binding site for Mono-Saccharide NAG H 301 bound to ASN H 23

Asymmetric Unit

No.	Residues
1	B:598	-	B:604
2	B:605	-	G:501
3	D:22	-	D:92
4	D:140	-	D:196
5	E:23	-	E:88
6	E:27C	-	E:28
7	E:89	-	E:96
8	E:134	-	E:193
9	G:54	-	G:74
10	G:119	-	G:205
11	G:126	-	G:196
12	G:131	-	G:157
13	G:201	-	G:433
14	G:218	-	G:247
15	G:228	-	G:239
16	G:296	-	G:331
17	G:378	-	G:445
18	G:385	-	G:418
19	H:22	-	H:92
20	H:138	-	H:194
21	L:23	-	L:88
22	L:135	-	L:194

Asymmetric Unit

No.	Residues
1	Phe D:146	-	Pro D:147
2	Glu D:148	-	Pro D:149
3	Cys E:27C	-	Cys E:28
4	Ala E:127	-	Asn E:128
5	Tyr E:140	-	Pro E:141
6	Gly G:312	-	Pro G:313
7	Phe H:144	-	Pro H:145
8	Glu H:146	-	Pro H:147
9	Gly H:188	-	Thr H:189
10	Gln L:109	-	Pro L:110
11	Tyr L:141	-	Pro L:142

(no "SAP(SNP)/Variant" information available for 5UTY)

(no "PROSITE Motif" information available for 5UTY)

(no "Exon" information available for 5UTY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain B from PDB  Type:PROTEIN  Length:122
                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                5uty B  517 AVFLGFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQD  659
                                   526       536       546||     577       587       597       607       617       627       637       647       657  
                                                        547|                                                                                          
                                                         569

Chain D from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.............eeee..........eeeeeee...eeeeeeee......eee.hhhh..eeeee...ee.....ee.eeeeee...hhhhh..eeeee.............ee................eeeeeeeeeee....eeeeeeeeeee.....eeee........eee...ee.....eeeeeee............eeeeee....eeeeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5uty D    1 QGQLVQSGAELKKPGASVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVIMTTDTEVPVTSFTSTGAAYMEIRNLKFDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKGLEVLF  224
                                    10        20        30        40        50  |     59        69   ||||72G|       81 |||    88        98  |||||102       112       122       132       142       152       162       172       182       192       202       212       222  
                                                                              52A                  72A|||||||        82A||               100A|||||                                                                                                                            
                                                                                                    72B||||||         82B|                100B||||                                                                                                                            
                                                                                                     72C|||||          82C                 100C|||                                                                                                                            
                                                                                                      72D||||                               100D||                                                                                                                            
                                                                                                       72E|||                                100E|                                                                                                                            
                                                                                                        72F||                                 100F                                                                                                                            
                                                                                                         72G|                                                                                                                                                                 
                                                                                                          72H

Chain E from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..eeee......eeeee..........eeeeee.......eeeee...ee.......eeeee...eeeeee.........eeeeeee......ee...eeeee..........eee............eeeeeeeee.....eee...........eee...ee.....eeeeeeee.hhhhhhh...eeeeeee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5uty E    2 SVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  210
                                   |12        22     |||29        39        49        59        69        79        89      | 98       107       117       127       137       147       157       167       177       187       197       207   
                                   9|              27A||                                                                  95A        106A                                                                                                        
                                   11               27B|                                                                                                                                                                                         
                                                     27C

Chain G from PDB  Type:PROTEIN  Length:449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eee.....eee...hhhhh....................eee....eeee....hhhhhhhhhhhhhhhhhhh...........eeeee............eeeeee.............eeeee...ee........ee........ee............eee....eeeeee.......eeee..eeee..............ee..........eee.........eeeeeeeeeeeeeee.....eeeee.....eeeee.........eeeeeehhhhhhhhhhhhhhhh........eee......hhhhhh..eee..eeeee........ee......eeeeeeeee.ee.........ee.......eeeeeeeeeeeeee....eeeee....hhhhhhhhh..eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5uty G   31 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGEMKNCSFNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPMNMTRKSIRIGPGQAFYALGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    40        50        60        70        80        90       100       110       120       130       140||     158       168       178      |189       199       209       219       229       239       249       259       269       279       289       299       309|      321|      330       340       350       360       370       380       390       411       421       431       441       451     ||466       476       486       496         
                                                                                                                                        141|                                185|                                                                                                                       309|      321A                                                                          398|                                            457|                                          
                                                                                                                                         150                                 187                                                                                                                        312                                                                                     410                                             463

Chain H from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...ee....eeeeeeee........eeeeeee......eeeeee......ee.hhhh..eeeeee....eeeeeee..hhhhheeeeeeee...ee..........ee..........eeeee........ee..............eeeeeeeeee.....eeee.....................eeeeeeeee..........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5uty H    1 QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  211
                                    10        20        30        40        50        60        70        80  |||   87        97   |||100G||||||100Q|      109       119       129       139       149       159       169       179       189       199       209  
                                                                                                            82A||               100A|||||100J||||||||                                                                                                               
                                                                                                             82B|                100B|||||100K|||||||                                                                                                               
                                                                                                              82C                 100C|||||100L||||||                                                                                                               
                                                                                                                                   100D|||||100M|||||                                                                                                               
                                                                                                                                    100E|||| 100N||||                                                                                                               
                                                                                                                                     100F|||  100O|||                                                                                                               
                                                                                                                                      100G||   100P||                                                                                                               
                                                                                                                                       100H|    100Q|                                                                                                               
                                                                                                                                        100I     100R

Chain L from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeee..........eeeee.....eeeee.............eee.........eeeee...hhhhh.eeeee................eeee........eeeee..hhhhhhh..eeeeeeee.......eeeeee........eee...........eeeeeeeehhhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5uty L    8 TFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT  210
                             ||     18        28        38        48        58       67A||      75        85        95|||    102       112       122       132       142       152       162       172       182       192       202        
                             9|                                                      67A||                          95A||                                                                                                                   
                             11                                                       67B|                           95B|                                                                                                                   
                                                                                       67C                            95C

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5UTY)

(no "CATH Domain" information available for 5UTY)

(no "Pfam Domain" information available for 5UTY)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		BMA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		AD1	[ RasMol ]	+environment [ RasMol ]
		AD2	[ RasMol ]	+environment [ RasMol ]
		AD3	[ RasMol ]	+environment [ RasMol ]
		AD4	[ RasMol ]	+environment [ RasMol ]
		AD5	[ RasMol ]	+environment [ RasMol ]
		AD6	[ RasMol ]	+environment [ RasMol ]
		AD7	[ RasMol ]	+environment [ RasMol ]
		AD8	[ RasMol ]	+environment [ RasMol ]
		AD9	[ RasMol ]	+environment [ RasMol ]
		AE1	[ RasMol ]	+environment [ RasMol ]
		AE2	[ RasMol ]	+environment [ RasMol ]
		AE3	[ RasMol ]	+environment [ RasMol ]
		AE4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala E:127 - Asn E:128	[ RasMol ]
		Cys E:27C - Cys E:28	[ RasMol ]
		Gln L:109 - Pro L:110	[ RasMol ]
		Glu D:148 - Pro D:149	[ RasMol ]
		Glu H:146 - Pro H:147	[ RasMol ]
		Gly G:312 - Pro G:313	[ RasMol ]
		Gly H:188 - Thr H:189	[ RasMol ]
		Phe D:146 - Pro D:147	[ RasMol ]
		Phe H:144 - Pro H:145	[ RasMol ]
		Tyr E:140 - Pro E:141	[ RasMol ]
		Tyr L:141 - Pro L:142	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	5uty
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q2N0S6_9HIV1 \| Q2N0S6
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q2N0S6_9HIV1 \| Q2N0S6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	Q2N0S6_9HIV1 \| Q2N0S6	:	5v7j 5v8l 5v8m 5viy 5vj6 5w6d
UniProtKB/TrEMBL
	Q2N0S6_9HIV1 \| Q2N0S6	:	3j5m 4nco 4zmj 5aco 5c7k 5cez 5cjx 5d9q 5fyl 5i8h 5js9 5jsa 5t3s 5t3x 5t3z 5thr 5u1f 5utf

(no "Related Entries Specified in the PDB File" available for 5UTY)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 57)

Sites (22, 22)

SS Bonds (22, 22)

Cis Peptide Bonds (11, 11)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File