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(-) Description

Title :  CRYO-EM STRUCTURE OF PGT128 FAB IN COMPLEX WITH BG505 SOSIP. 664 ENV TRIMER
 
Authors :  J. H. Lee, A. B. Ward
Date :  17 Aug 15  (Deposition) - 30 Sep 15  (Release) - 21 Oct 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.36
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Viral Protein, Immune System, Hiv-1, Env, Bnab, Antibody, Pgt128 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Lee, N. De Val, D. Lyumkis, A. B. Ward
Model Building And Refinement Of A Natively Glycosylated Hiv-1 Env Protein By High-Resolution Cryoelectron Microscopy.
Structure V. 23 1943 2015
PubMed-ID: 26388028  |  Reference-DOI: 10.1016/J.STR.2015.07.020

(-) Compounds

Molecule 1 - HIV-1 ENVELOPE GLYCOPROTEIN
    Chains: A, C, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: GP120, RESIDUES 30-505
    Gene: ENV
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Other Details: THE ENV SEQUENCE IS FROM THE CLADE A VIRUS BG505, TRUNCATED AT RESIDUE 664 OF GP41, MUTATED TO HAVE THE N332 GLYCOSYLATION SITE, AND CONTAINS STABILIZING SOSIP MUTATIONS.
    Variant: BG505 SOSIP.664
 
Molecule 2 - HIV-1 ENVELOPE GLYCOPROTEIN
    Chains: B, E, F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: GP41, RESIDUES 509-661
    Gene: ENV
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Other Details: THE ENV SEQUENCE IS FROM THE CLADE A VIRUS BG505, TRUNCATED AT RESIDUE 664 OF GP41, MUTATED TO HAVE THE N332 GLYCOSYLATION SITE, AND CONTAINS STABILIZING SOSIP MUTATIONS.
    Variant: BG505 SOSIP.664
 
Molecule 3 - PGT128 FAB
    Chains: G, H, I
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: HEAVY CHAIN OF FAB VARIABLE REGION
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THE FRAGMENT ANTIGEN BINDING (FAB) OF BNAB PGT128.
 
Molecule 4 - PGT128 FAB
    Chains: J, K, L
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: LIGHT CHAIN OF FAB VARIABLE REGION
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THE FRAGMENT ANTIGEN BINDING (FAB) OF BNAB PGT128.

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 192)

Asymmetric/Biological Unit (3, 192)
No.NameCountTypeFull Name
1BMA30Ligand/IonBETA-D-MANNOSE
2MAN51Ligand/IonALPHA-D-MANNOSE
3NAG111Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (192, 192)

Asymmetric Unit (192, 192)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREASN A:88 , NAG A:1089 , GLY B:527 , SER B:528BINDING SITE FOR RESIDUE NAG A1088
002AC2SOFTWARENAG A:1088 , BMA A:1090BINDING SITE FOR RESIDUE NAG A1089
003AC3SOFTWARENAG A:1089BINDING SITE FOR RESIDUE BMA A1090
004AC4SOFTWAREASN A:133 , NAG A:1134BINDING SITE FOR RESIDUE NAG A1133
005AC5SOFTWARENAG A:1133BINDING SITE FOR RESIDUE NAG A1134
006AC6SOFTWAREASN A:156 , TYR A:173 , NAG A:1157BINDING SITE FOR RESIDUE NAG A1156
007AC7SOFTWARENAG A:1156 , BMA A:1158BINDING SITE FOR RESIDUE NAG A1157
008AC8SOFTWARENAG A:1157BINDING SITE FOR RESIDUE BMA A1158
009AC9SOFTWAREGLN A:130 , ASN A:160 , NAG A:1161BINDING SITE FOR RESIDUE NAG A1160
010BC1SOFTWARENAG A:1160 , BMA A:1162BINDING SITE FOR RESIDUE NAG A1161
011BC2SOFTWARENAG A:1161BINDING SITE FOR RESIDUE BMA A1162
012BC3SOFTWAREILE A:194 , ASN A:197 , NAG A:1198BINDING SITE FOR RESIDUE NAG A1197
013BC4SOFTWARENAG A:1197BINDING SITE FOR RESIDUE NAG A1198
014BC5SOFTWAREASN A:234 , SER A:274 , NAG A:1235BINDING SITE FOR RESIDUE NAG A1234
015BC6SOFTWARENAG A:1234BINDING SITE FOR RESIDUE NAG A1235
016BC7SOFTWAREASN A:262 , VAL A:446 , SER A:447 , NAG A:1263 , NAG A:1448BINDING SITE FOR RESIDUE NAG A1262
017BC8SOFTWARENAG A:1262 , BMA A:1264BINDING SITE FOR RESIDUE NAG A1263
018BC9SOFTWARENAG A:1263 , MAN A:1265 , MAN A:1267BINDING SITE FOR RESIDUE BMA A1264
019CC1SOFTWAREBMA A:1264 , MAN A:1266BINDING SITE FOR RESIDUE MAN A1265
020CC2SOFTWAREMAN A:1265BINDING SITE FOR RESIDUE MAN A1266
021CC3SOFTWAREBMA A:1264 , MAN A:1268BINDING SITE FOR RESIDUE MAN A1267
022CC4SOFTWAREMAN A:1267BINDING SITE FOR RESIDUE MAN A1268
023CC5SOFTWAREASN A:276 , ASN A:279 , NAG A:1277BINDING SITE FOR RESIDUE NAG A1276
024CC6SOFTWARENAG A:1276 , BMA A:1278BINDING SITE FOR RESIDUE NAG A1277
025CC7SOFTWARENAG A:1277BINDING SITE FOR RESIDUE BMA A1278
026CC8SOFTWAREASN A:295 , NAG A:1296BINDING SITE FOR RESIDUE NAG A1295
027CC9SOFTWARENAG A:1295 , BMA A:1297BINDING SITE FOR RESIDUE NAG A1296
028DC1SOFTWARENAG A:1296 , MAN A:1298 , MAN A:1299BINDING SITE FOR RESIDUE BMA A1297
029DC2SOFTWAREBMA A:1297BINDING SITE FOR RESIDUE MAN A1298
030DC3SOFTWAREBMA A:1297BINDING SITE FOR RESIDUE MAN A1299
031DC4SOFTWAREASN A:301 , NAG A:1302 , HIS H:52A , CYS H:52B , ALA H:52CBINDING SITE FOR RESIDUE NAG A1301
032DC5SOFTWARENAG A:1301 , BMA A:1303 , MAN A:1305 , MAN A:1308 , ALA H:30 , ALA H:31 , HIS H:52ABINDING SITE FOR RESIDUE NAG A1302
033DC6SOFTWARENAG A:1302 , MAN A:1304 , MAN A:1305 , THR H:73BINDING SITE FOR RESIDUE BMA A1303
034DC7SOFTWAREBMA A:1303 , HIS H:52ABINDING SITE FOR RESIDUE MAN A1304
035DC8SOFTWARENAG A:1302 , BMA A:1303 , MAN A:1306 , MAN A:1308BINDING SITE FOR RESIDUE MAN A1305
036DC9SOFTWAREMAN A:1305BINDING SITE FOR RESIDUE MAN A1306
037EC1SOFTWARENAG A:1302 , MAN A:1305 , SER H:28BINDING SITE FOR RESIDUE MAN A1308
038EC2SOFTWARETHR A:297 , ASN A:332 , ARG A:444 , NAG A:1333BINDING SITE FOR RESIDUE NAG A1332
039EC3SOFTWARENAG A:1332 , BMA A:1334BINDING SITE FOR RESIDUE NAG A1333
040EC4SOFTWARENAG A:1333 , MAN A:1335 , MAN A:1336 , MAN A:1339BINDING SITE FOR RESIDUE BMA A1334
041EC5SOFTWAREBMA A:1334 , MAN A:1339BINDING SITE FOR RESIDUE MAN A1335
042EC6SOFTWAREBMA A:1334 , MAN A:1337 , MAN A:1341 , ASN L:94BINDING SITE FOR RESIDUE MAN A1336
043EC7SOFTWAREMAN A:1336BINDING SITE FOR RESIDUE MAN A1337
044EC8SOFTWAREBMA A:1334 , MAN A:1335 , MAN A:1340 , THR H:57BINDING SITE FOR RESIDUE MAN A1339
045EC9SOFTWAREMAN A:1339 , MAN A:1342 , TYR H:58 , HIS H:59 , LYS H:64 , TRP L:95BINDING SITE FOR RESIDUE MAN A1340
046FC1SOFTWAREMAN A:1336 , MAN A:1342 , ASN L:94BINDING SITE FOR RESIDUE MAN A1341
047FC2SOFTWAREMAN A:1340 , MAN A:1341 , PRO H:61 , ASN L:94 , TRP L:95BINDING SITE FOR RESIDUE MAN A1342
048FC3SOFTWAREASN A:339 , TRP A:395BINDING SITE FOR RESIDUE NAG A1343
049FC4SOFTWAREASN A:355 , NAG A:1356BINDING SITE FOR RESIDUE NAG A1355
050FC5SOFTWARENAG A:1355BINDING SITE FOR RESIDUE NAG A1356
051FC6SOFTWAREASN A:363 , THR A:372 , NAG A:1364 , NAG A:1386 , NAG A:1387BINDING SITE FOR RESIDUE NAG A1363
052FC7SOFTWARENAG A:1363 , BMA A:1365 , NAG A:1387BINDING SITE FOR RESIDUE NAG A1364
053FC8SOFTWARENAG A:1364BINDING SITE FOR RESIDUE BMA A1365
054FC9SOFTWAREASN A:386 , NAG A:1363 , NAG A:1387 , NAG A:1392BINDING SITE FOR RESIDUE NAG A1386
055GC1SOFTWARENAG A:1363 , NAG A:1364 , NAG A:1386 , BMA A:1388BINDING SITE FOR RESIDUE NAG A1387
056GC2SOFTWARENAG A:1387BINDING SITE FOR RESIDUE BMA A1388
057GC3SOFTWAREASN A:392 , NAG A:1386 , NAG A:1393BINDING SITE FOR RESIDUE NAG A1392
058GC4SOFTWARENAG A:1392BINDING SITE FOR RESIDUE NAG A1393
059GC5SOFTWARELEU A:265 , PRO A:291 , ASN A:448 , NAG A:1262 , NAG A:1449BINDING SITE FOR RESIDUE NAG A1448
060GC6SOFTWARENAG A:1448BINDING SITE FOR RESIDUE NAG A1449
061GC7SOFTWAREASN B:611 , SER B:613 , NAG B:1612BINDING SITE FOR RESIDUE NAG B1611
062GC8SOFTWARENAG B:1611BINDING SITE FOR RESIDUE NAG B1612
063GC9SOFTWAREASN B:618BINDING SITE FOR RESIDUE NAG B1618
064HC1SOFTWAREASN B:637BINDING SITE FOR RESIDUE NAG B1637
065HC2SOFTWAREASN C:88 , NAG C:1089 , GLY E:527 , SER E:528BINDING SITE FOR RESIDUE NAG C1088
066HC3SOFTWARENAG C:1088 , BMA C:1090BINDING SITE FOR RESIDUE NAG C1089
067HC4SOFTWARENAG C:1089BINDING SITE FOR RESIDUE BMA C1090
068HC5SOFTWAREASN C:133 , NAG C:1134BINDING SITE FOR RESIDUE NAG C1133
069HC6SOFTWARENAG C:1133BINDING SITE FOR RESIDUE NAG C1134
070HC7SOFTWAREASN C:156 , TYR C:173 , NAG C:1157BINDING SITE FOR RESIDUE NAG C1156
071HC8SOFTWARENAG C:1156 , BMA C:1158BINDING SITE FOR RESIDUE NAG C1157
072HC9SOFTWARENAG C:1157BINDING SITE FOR RESIDUE BMA C1158
073IC1SOFTWAREGLN C:130 , ASN C:160 , NAG C:1161BINDING SITE FOR RESIDUE NAG C1160
074IC2SOFTWARENAG C:1160 , BMA C:1162BINDING SITE FOR RESIDUE NAG C1161
075IC3SOFTWARENAG C:1161BINDING SITE FOR RESIDUE BMA C1162
076IC4SOFTWAREILE C:194 , ASN C:197 , NAG C:1198BINDING SITE FOR RESIDUE NAG C1197
077IC5SOFTWARENAG C:1197BINDING SITE FOR RESIDUE NAG C1198
078IC6SOFTWAREASN C:234 , SER C:274 , NAG C:1235BINDING SITE FOR RESIDUE NAG C1234
079IC7SOFTWARENAG C:1234BINDING SITE FOR RESIDUE NAG C1235
080IC8SOFTWAREASN C:262 , VAL C:446 , SER C:447 , NAG C:1263 , NAG C:1448BINDING SITE FOR RESIDUE NAG C1262
081IC9SOFTWARENAG C:1262 , BMA C:1264BINDING SITE FOR RESIDUE NAG C1263
082JC1SOFTWARENAG C:1263 , MAN C:1265 , MAN C:1267BINDING SITE FOR RESIDUE BMA C1264
083JC2SOFTWAREBMA C:1264 , MAN C:1266BINDING SITE FOR RESIDUE MAN C1265
084JC3SOFTWAREMAN C:1265BINDING SITE FOR RESIDUE MAN C1266
085JC4SOFTWAREBMA C:1264 , MAN C:1268BINDING SITE FOR RESIDUE MAN C1267
086JC5SOFTWAREMAN C:1267BINDING SITE FOR RESIDUE MAN C1268
087JC6SOFTWAREASN C:276 , ASN C:279 , NAG C:1277BINDING SITE FOR RESIDUE NAG C1276
088JC7SOFTWARENAG C:1276 , BMA C:1278BINDING SITE FOR RESIDUE NAG C1277
089JC8SOFTWARENAG C:1277BINDING SITE FOR RESIDUE BMA C1278
090JC9SOFTWAREASN C:295 , NAG C:1296BINDING SITE FOR RESIDUE NAG C1295
091KC1SOFTWARENAG C:1295 , BMA C:1297BINDING SITE FOR RESIDUE NAG C1296
092KC2SOFTWARENAG C:1296 , MAN C:1298 , MAN C:1299BINDING SITE FOR RESIDUE BMA C1297
093KC3SOFTWAREBMA C:1297BINDING SITE FOR RESIDUE MAN C1298
094KC4SOFTWAREBMA C:1297BINDING SITE FOR RESIDUE MAN C1299
095KC5SOFTWAREASN C:301 , NAG C:1302 , HIS G:52A , CYS G:52B , ALA G:52CBINDING SITE FOR RESIDUE NAG C1301
096KC6SOFTWARENAG C:1301 , BMA C:1303 , MAN C:1305 , MAN C:1308 , ALA G:30 , ALA G:31 , HIS G:52ABINDING SITE FOR RESIDUE NAG C1302
097KC7SOFTWARENAG C:1302 , MAN C:1304 , MAN C:1305 , THR G:73BINDING SITE FOR RESIDUE BMA C1303
098KC8SOFTWAREBMA C:1303 , HIS G:52ABINDING SITE FOR RESIDUE MAN C1304
099KC9SOFTWARENAG C:1302 , BMA C:1303 , MAN C:1306 , MAN C:1308BINDING SITE FOR RESIDUE MAN C1305
100LC1SOFTWAREMAN C:1305BINDING SITE FOR RESIDUE MAN C1306
101LC2SOFTWARENAG C:1302 , MAN C:1305 , SER G:28BINDING SITE FOR RESIDUE MAN C1308
102LC3SOFTWARETHR C:297 , ASN C:332 , ARG C:444 , NAG C:1333BINDING SITE FOR RESIDUE NAG C1332
103LC4SOFTWARENAG C:1332 , BMA C:1334BINDING SITE FOR RESIDUE NAG C1333
104LC5SOFTWARENAG C:1333 , MAN C:1335 , MAN C:1336 , MAN C:1339BINDING SITE FOR RESIDUE BMA C1334
105LC6SOFTWAREBMA C:1334 , MAN C:1339BINDING SITE FOR RESIDUE MAN C1335
106LC7SOFTWAREBMA C:1334 , MAN C:1337 , MAN C:1341 , ASN J:94BINDING SITE FOR RESIDUE MAN C1336
107LC8SOFTWAREMAN C:1336BINDING SITE FOR RESIDUE MAN C1337
108LC9SOFTWAREBMA C:1334 , MAN C:1335 , MAN C:1340 , THR G:57BINDING SITE FOR RESIDUE MAN C1339
109MC1SOFTWAREMAN C:1339 , MAN C:1342 , TYR G:58 , HIS G:59 , LYS G:64 , TRP J:95BINDING SITE FOR RESIDUE MAN C1340
110MC2SOFTWAREMAN C:1336 , MAN C:1342 , ASN J:94BINDING SITE FOR RESIDUE MAN C1341
111MC3SOFTWAREMAN C:1340 , MAN C:1341 , PRO G:61 , ASN J:94 , TRP J:95BINDING SITE FOR RESIDUE MAN C1342
112MC4SOFTWAREASN C:339 , TRP C:395BINDING SITE FOR RESIDUE NAG C1343
113MC5SOFTWAREASN C:355 , NAG C:1356BINDING SITE FOR RESIDUE NAG C1355
114MC6SOFTWARENAG C:1355BINDING SITE FOR RESIDUE NAG C1356
115MC7SOFTWAREASN C:363 , THR C:372 , NAG C:1364 , NAG C:1386 , NAG C:1387BINDING SITE FOR RESIDUE NAG C1363
116MC8SOFTWARENAG C:1363 , BMA C:1365 , NAG C:1387BINDING SITE FOR RESIDUE NAG C1364
117MC9SOFTWARENAG C:1364BINDING SITE FOR RESIDUE BMA C1365
118NC1SOFTWAREASN C:386 , NAG C:1363 , NAG C:1387 , NAG C:1392BINDING SITE FOR RESIDUE NAG C1386
119NC2SOFTWARENAG C:1363 , NAG C:1364 , NAG C:1386 , BMA C:1388BINDING SITE FOR RESIDUE NAG C1387
120NC3SOFTWARENAG C:1387BINDING SITE FOR RESIDUE BMA C1388
121NC4SOFTWAREASN C:392 , NAG C:1386 , NAG C:1393BINDING SITE FOR RESIDUE NAG C1392
122NC5SOFTWARENAG C:1392BINDING SITE FOR RESIDUE NAG C1393
123NC6SOFTWARELEU C:265 , PRO C:291 , ASN C:448 , NAG C:1262 , NAG C:1449BINDING SITE FOR RESIDUE NAG C1448
124NC7SOFTWARENAG C:1448BINDING SITE FOR RESIDUE NAG C1449
125NC8SOFTWAREASN D:88 , NAG D:1089 , GLY F:527 , SER F:528BINDING SITE FOR RESIDUE NAG D1088
126NC9SOFTWARENAG D:1088 , BMA D:1090BINDING SITE FOR RESIDUE NAG D1089
127OC1SOFTWARENAG D:1089BINDING SITE FOR RESIDUE BMA D1090
128OC2SOFTWAREASN D:133 , NAG D:1134BINDING SITE FOR RESIDUE NAG D1133
129OC3SOFTWARENAG D:1133BINDING SITE FOR RESIDUE NAG D1134
130OC4SOFTWAREASN D:156 , TYR D:173 , NAG D:1157BINDING SITE FOR RESIDUE NAG D1156
131OC5SOFTWARENAG D:1156 , BMA D:1158BINDING SITE FOR RESIDUE NAG D1157
132OC6SOFTWARENAG D:1157BINDING SITE FOR RESIDUE BMA D1158
133OC7SOFTWAREGLN D:130 , ASN D:160 , NAG D:1161BINDING SITE FOR RESIDUE NAG D1160
134OC8SOFTWARENAG D:1160 , BMA D:1162BINDING SITE FOR RESIDUE NAG D1161
135OC9SOFTWARENAG D:1161BINDING SITE FOR RESIDUE BMA D1162
136PC1SOFTWAREILE D:194 , ASN D:197 , NAG D:1198BINDING SITE FOR RESIDUE NAG D1197
137PC2SOFTWARENAG D:1197BINDING SITE FOR RESIDUE NAG D1198
138PC3SOFTWAREASN D:234 , SER D:274 , NAG D:1235BINDING SITE FOR RESIDUE NAG D1234
139PC4SOFTWARENAG D:1234BINDING SITE FOR RESIDUE NAG D1235
140PC5SOFTWAREASN D:262 , VAL D:446 , SER D:447 , NAG D:1263 , NAG D:1448BINDING SITE FOR RESIDUE NAG D1262
141PC6SOFTWARENAG D:1262 , BMA D:1264BINDING SITE FOR RESIDUE NAG D1263
142PC7SOFTWARENAG D:1263 , MAN D:1265 , MAN D:1267BINDING SITE FOR RESIDUE BMA D1264
143PC8SOFTWAREBMA D:1264 , MAN D:1266BINDING SITE FOR RESIDUE MAN D1265
144PC9SOFTWAREMAN D:1265BINDING SITE FOR RESIDUE MAN D1266
145QC1SOFTWAREBMA D:1264 , MAN D:1268BINDING SITE FOR RESIDUE MAN D1267
146QC2SOFTWAREMAN D:1267BINDING SITE FOR RESIDUE MAN D1268
147QC3SOFTWAREASN D:276 , ASN D:279 , NAG D:1277BINDING SITE FOR RESIDUE NAG D1276
148QC4SOFTWARENAG D:1276 , BMA D:1278BINDING SITE FOR RESIDUE NAG D1277
149QC5SOFTWARENAG D:1277BINDING SITE FOR RESIDUE BMA D1278
150QC6SOFTWAREASN D:295 , NAG D:1296BINDING SITE FOR RESIDUE NAG D1295
151QC7SOFTWARENAG D:1295 , BMA D:1297BINDING SITE FOR RESIDUE NAG D1296
152QC8SOFTWARENAG D:1296 , MAN D:1298 , MAN D:1299BINDING SITE FOR RESIDUE BMA D1297
153QC9SOFTWAREBMA D:1297BINDING SITE FOR RESIDUE MAN D1298
154RC1SOFTWAREBMA D:1297BINDING SITE FOR RESIDUE MAN D1299
155RC2SOFTWAREASN D:301 , NAG D:1302 , HIS I:52A , CYS I:52B , ALA I:52CBINDING SITE FOR RESIDUE NAG D1301
156RC3SOFTWARENAG D:1301 , BMA D:1303 , MAN D:1305 , MAN D:1308 , ALA I:30 , ALA I:31 , HIS I:52ABINDING SITE FOR RESIDUE NAG D1302
157RC4SOFTWARENAG D:1302 , MAN D:1304 , MAN D:1305 , THR I:73BINDING SITE FOR RESIDUE BMA D1303
158RC5SOFTWAREBMA D:1303 , HIS I:52ABINDING SITE FOR RESIDUE MAN D1304
159RC6SOFTWARENAG D:1302 , BMA D:1303 , MAN D:1306 , MAN D:1308BINDING SITE FOR RESIDUE MAN D1305
160RC7SOFTWAREMAN D:1305BINDING SITE FOR RESIDUE MAN D1306
161RC8SOFTWARENAG D:1302 , MAN D:1305 , SER I:28BINDING SITE FOR RESIDUE MAN D1308
162RC9SOFTWARETHR D:297 , ASN D:332 , ARG D:444 , NAG D:1333BINDING SITE FOR RESIDUE NAG D1332
163SC1SOFTWARENAG D:1332 , BMA D:1334BINDING SITE FOR RESIDUE NAG D1333
164SC2SOFTWARENAG D:1333 , MAN D:1335 , MAN D:1336 , MAN D:1339BINDING SITE FOR RESIDUE BMA D1334
165SC3SOFTWAREBMA D:1334 , MAN D:1339BINDING SITE FOR RESIDUE MAN D1335
166SC4SOFTWAREBMA D:1334 , MAN D:1337 , MAN D:1341 , ASN K:94BINDING SITE FOR RESIDUE MAN D1336
167SC5SOFTWAREMAN D:1336BINDING SITE FOR RESIDUE MAN D1337
168SC6SOFTWAREBMA D:1334 , MAN D:1335 , MAN D:1340 , THR I:57BINDING SITE FOR RESIDUE MAN D1339
169SC7SOFTWAREMAN D:1339 , MAN D:1342 , TYR I:58 , HIS I:59 , LYS I:64 , TRP K:95BINDING SITE FOR RESIDUE MAN D1340
170SC8SOFTWAREMAN D:1336 , MAN D:1342 , ASN K:94BINDING SITE FOR RESIDUE MAN D1341
171SC9SOFTWAREMAN D:1340 , MAN D:1341 , PRO I:61 , ASN K:94 , TRP K:95BINDING SITE FOR RESIDUE MAN D1342
172TC1SOFTWAREASN D:339 , TRP D:395BINDING SITE FOR RESIDUE NAG D1343
173TC2SOFTWAREASN D:355 , NAG D:1356BINDING SITE FOR RESIDUE NAG D1355
174TC3SOFTWARENAG D:1355BINDING SITE FOR RESIDUE NAG D1356
175TC4SOFTWAREASN D:363 , THR D:372 , NAG D:1364 , NAG D:1386 , NAG D:1387BINDING SITE FOR RESIDUE NAG D1363
176TC5SOFTWARENAG D:1363 , BMA D:1365 , NAG D:1387BINDING SITE FOR RESIDUE NAG D1364
177TC6SOFTWARENAG D:1364BINDING SITE FOR RESIDUE BMA D1365
178TC7SOFTWAREASN D:386 , NAG D:1363 , NAG D:1387 , NAG D:1392BINDING SITE FOR RESIDUE NAG D1386
179TC8SOFTWARENAG D:1363 , NAG D:1364 , NAG D:1386 , BMA D:1388BINDING SITE FOR RESIDUE NAG D1387
180TC9SOFTWARENAG D:1387BINDING SITE FOR RESIDUE BMA D1388
181UC1SOFTWAREASN D:392 , NAG D:1386 , NAG D:1393BINDING SITE FOR RESIDUE NAG D1392
182UC2SOFTWARENAG D:1392BINDING SITE FOR RESIDUE NAG D1393
183UC3SOFTWARELEU D:265 , PRO D:291 , ASN D:448 , NAG D:1262 , NAG D:1449BINDING SITE FOR RESIDUE NAG D1448
184UC4SOFTWARENAG D:1448BINDING SITE FOR RESIDUE NAG D1449
185UC5SOFTWAREASN E:611 , SER E:613 , NAG E:1612BINDING SITE FOR RESIDUE NAG E1611
186UC6SOFTWARENAG E:1611BINDING SITE FOR RESIDUE NAG E1612
187UC7SOFTWAREASN E:618BINDING SITE FOR RESIDUE NAG E1618
188UC8SOFTWAREASN E:637BINDING SITE FOR RESIDUE NAG E1637
189UC9SOFTWAREASN F:611 , SER F:613 , NAG F:1612BINDING SITE FOR RESIDUE NAG F1611
190VC1SOFTWARENAG F:1611BINDING SITE FOR RESIDUE NAG F1612
191VC2SOFTWAREASN F:618BINDING SITE FOR RESIDUE NAG F1618
192VC3SOFTWAREASN F:637BINDING SITE FOR RESIDUE NAG F1637

(-) SS Bonds  (42, 42)

Asymmetric/Biological Unit
No.Residues
1A:54 -A:74
2A:119 -A:205
3A:126 -A:196
4A:131 -A:157
5A:218 -A:247
6A:228 -A:239
7A:296 -A:331
8A:378 -A:445
9A:385 -A:418
10A:501 -B:605
11B:598 -B:604
12C:54 -C:74
13C:119 -C:205
14C:126 -C:196
15C:131 -C:157
16C:218 -C:247
17C:228 -C:239
18C:296 -C:331
19C:378 -C:445
20C:385 -C:418
21C:501 -E:605
22D:54 -D:74
23D:119 -D:205
24D:126 -D:196
25D:131 -D:157
26D:218 -D:247
27D:228 -D:239
28D:296 -D:331
29D:378 -D:445
30D:385 -D:418
31D:501 -F:605
32E:598 -E:604
33F:598 -F:604
34G:22 -G:92
35G:32 -G:52B
36H:22 -H:92
37H:32 -H:52B
38I:22 -I:92
39I:32 -I:52B
40J:23 -J:88
41K:23 -K:88
42L:23 -L:88

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Ile A:138 -Thr A:139
2Gly A:312 -Pro A:313
3Asn A:411 -Asp A:412
4Ile C:138 -Thr C:139
5Gly C:312 -Pro C:313
6Asn C:411 -Asp C:412
7Ile D:138 -Thr D:139
8Gly D:312 -Pro D:313
9Asn D:411 -Asp D:412
10Ser J:27 -Asn J:30
11Ser K:27 -Asn K:30
12Ser L:27 -Asn L:30

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ACO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ACO)

(-) Exons   (0, 0)

(no "Exon" information available for 5ACO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....eee.....eee..................eee......eee....hhhhhhhhhhhhhhhhh......hhhhh..eee..............eeeeeeee........eeeeeeee...eee...eeeee.hhhh..eee............eee....eeeeee.......eee...eeee.............eee.........eee.........eeeeeeeeeeeeeeee.......ee.......ee......ee....eeeeehhhhhhhhhhhhhhhhh......eeee......hhhhhheeeee..eeeee.hhhh..eee.....eeeeeeeee.eehhhhh...eee.......eeeeeeeeeeeeee.....eeeeee....hhhhhhhhhh.eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco A   33 NLWVTVYYGVPVWKDAETTLFCASDAVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52     || 71        81        91       101       111       121       131       141|      159       169       179     ||191       201       211       221       231       241       251       261       271       281       291       301       313       322       332       342       352       362       372       382       392     ||414       424       434       444       454  ||   467       477       487       497        
                                                    58|                                                                      141|                                185|                                                                                                                      309|      321A                                                                          398|                                           457|                                            
                                                     68                                                                       150                                 188                                                                                                                       312                                                                                     411                                            461                                            


Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhh.hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh......ee.............hhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco B  518 VFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   527       537       547  ||   572       582       592       602       612       622       632       642       652       662  
                                                          550|                                                                                                  
                                                           566                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....eee.....eee..................eee......eee....hhhhhhhhhhhhhhhhh......hhhhh..eee..............eeeeeeee........eeeeeeee...eee...eeeee.hhhh..eee............eee....eeeeee.......eee...eeee.............eee.........eee.........eeeeeeeeeeeeeeee.......ee.......ee......ee....eeeeehhhhhhhhhhhhhhhhh......eeee......hhhhhheeeee..eeeee.hhhh..eee.....eeeeeeeee.eehhhhh...eee.......eeeeeeeeeeeeee.....eeeeee....hhhhhhhhhh.eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco C   33 NLWVTVYYGVPVWKDAETTLFCASDAVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52     || 71        81        91       101       111       121       131       141|      159       169       179     ||191       201       211       221       231       241       251       261       271       281       291       301       313       322       332       342       352       362       372       382       392     ||414       424       434       444       454  ||   467       477       487       497        
                                                    58|                                                                      141|                                185|                                                                                                                      309|      321A                                                                          398|                                           457|                                            
                                                     68                                                                       150                                 188                                                                                                                       312                                                                                     411                                            461                                            


Chain D from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....eee.....eee..................eee......eee....hhhhhhhhhhhhhhhhh......hhhhh..eee..............eeeeeeee........eeeeeeee...eee...eeeee.hhhh..eee............eee....eeeeee.......eee...eeee.............eee.........eee.........eeeeeeeeeeeeeeee.......ee.......ee......ee....eeeeehhhhhhhhhhhhhhhhh......eeee......hhhhhheeeee..eeeee.hhhh..eee.....eeeeeeeee.eehhhhh...eee.......eeeeeeeeeeeeee.....eeeeee....hhhhhhhhhh.eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco D   33 NLWVTVYYGVPVWKDAETTLFCASDAVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52     || 71        81        91       101       111       121       131       141|      159       169       179     ||191       201       211       221       231       241       251       261       271       281       291       301       313       322       332       342       352       362       372       382       392     ||414       424       434       444       454  ||   467       477       487       497        
                                                    58|                                                                      141|                                185|                                                                                                                      309|      321A                                                                          398|                                           457|                                            
                                                     68                                                                       150                                 188                                                                                                                       312                                                                                     411                                            461                                            


Chain E from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhh.hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh......ee.............hhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco E  518 VFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   527       537       547  ||   572       582       592       602       612       622       632       642       652       662  
                                                          550|                                                                                                  
                                                           566                                                                                                  


Chain F from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhh.hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh......ee.............hhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco F  518 VFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   527       537       547  ||   572       582       592       602       612       622       632       642       652       662  
                                                          550|                                                                                                  
                                                           566                                                                                                  


Chain G from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................eeeeee...........eeeeeee.......eeeeee.........eeee...hhh.eeeeee....eeeeee...hhhhheeeeeeeeeee..ee....eeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco G    2 PQLQESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTV  111
                                    11        21        31    ||  39        49   |||||53        63        73       82A||      90       100||||||100J|      109  
                                                            35A|               52A|||||                            82A||               100A|||||100J|           
                                                             35B                52B||||                             82B|                100B|||||100K           
                                                                                 52C|||                              82C                 100C||||||             
                                                                                  52D||                                                   100D|||||             
                                                                                   52E|                                                    100E||||             
                                                                                    52F                                                     100F|||             
                                                                                                                                             100G||             
                                                                                                                                              100H|             
                                                                                                                                               100I             


Chain H from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................eeeeee...........eeeeeee.......eeeeee.........eeee...hhh.eeeeee....eeeeee...hhhhheeeeeeeeeee..ee....eeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco H    2 PQLQESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTV  111
                                    11        21        31    ||  39        49   |||||53        63        73       82A||      90       100||||||100J|      109  
                                                            35A|               52A|||||                            82A||               100A|||||100J|           
                                                             35B                52B||||                             82B|                100B|||||100K           
                                                                                 52C|||                              82C                 100C||||||             
                                                                                  52D||                                                   100D|||||             
                                                                                   52E|                                                    100E||||             
                                                                                    52F                                                     100F|||             
                                                                                                                                             100G||             
                                                                                                                                              100H|             
                                                                                                                                               100I             


Chain I from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................eeeeee...........eeeeeee.......eeeeee.........eeee...hhh.eeeeee....eeeeee...hhhhheeeeeeeeeee..ee....eeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aco I    2 PQLQESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTV  111
                                    11        21        31    ||  39        49   |||||53        63        73       82A||      90       100||||||100J|      109  
                                                            35A|               52A|||||                            82A||               100A|||||100J|           
                                                             35B                52B||||                             82B|                100B|||||100K           
                                                                                 52C|||                              82C                 100C||||||             
                                                                                  52D||                                                   100D|||||             
                                                                                   52E|                                                    100E||||             
                                                                                    52F                                                     100F|||             
                                                                                                                                             100G||             
                                                                                                                                              100H|             
                                                                                                                                               100I             


Chain J from PDB  Type:PROTEIN  Length:103
                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eeeeeee......eeeeee......eeee.............eeeeee..eeeeeee..hhhhheeeeeeeee...eeee...eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                5aco J    2 SALTQPPSASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTV  106
                                   |12        22    ||  34        44        54        64        74        84        94 |     103   
                                   9|              27|                                                               95A           
                                   11               30                                                                             


Chain K from PDB  Type:PROTEIN  Length:103
                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eeeeeee......eeeeee......eeee.............eeeeee..eeeeeee..hhhhheeeeeeeee...eeee...eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                5aco K    2 SALTQPPSASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTV  106
                                   |12        22    ||  34        44        54        64        74        84        94 |     103   
                                   9|              27|                                                               95A           
                                   11               30                                                                             


Chain L from PDB  Type:PROTEIN  Length:103
                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eeeeeee......eeeeee......eeee.............eeeeee..eeeeeee..hhhhheeeeeeeee...eeee...eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                5aco L    2 SALTQPPSASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTV  106
                                   |12        22    ||  34        44        54        64        74        84        94 |     103   
                                   9|              27|                                                               95A           
                                   11               30
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ACO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ACO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ACO)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:411 - Asp A:412   [ RasMol ]  
    Asn C:411 - Asp C:412   [ RasMol ]  
    Asn D:411 - Asp D:412   [ RasMol ]  
    Gly A:312 - Pro A:313   [ RasMol ]  
    Gly C:312 - Pro C:313   [ RasMol ]  
    Gly D:312 - Pro D:313   [ RasMol ]  
    Ile A:138 - Thr A:139   [ RasMol ]  
    Ile C:138 - Thr C:139   [ RasMol ]  
    Ile D:138 - Thr D:139   [ RasMol ]  
    Ser J:27 - Asn J:30   [ RasMol ]  
    Ser K:27 - Asn K:30   [ RasMol ]  
    Ser L:27 - Asn L:30   [ RasMol ]  
 

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  5aco
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  Q2N0S6_9HIV1 | Q2N0S6
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  Q2N0S6_9HIV1 | Q2N0S6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q2N0S6_9HIV1 | Q2N0S6: 5v7j 5v8l 5v8m 5viy 5vj6 5w6d
UniProtKB/TrEMBL
        Q2N0S6_9HIV1 | Q2N0S6: 3j5m 4nco 4zmj 5c7k 5cez 5cjx 5d9q 5fyl 5i8h 5js9 5jsa 5t3s 5t3x 5t3z 5thr 5u1f 5utf 5uty

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5ACO)