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(-) Description

Title :  INHIBITING ALTERNATIVE PATHWAY COMPLEMENT ACTIVATION BY TARGETING THE EXOSITE ON FACTOR D
 
Authors :  J. M. Murray, C. Wiesmann
Date :  11 Jan 12  (Deposition) - 22 Feb 12  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.28
Chains :  Asym. Unit :  A,B,D,E,H,L
Biol. Unit 1:  A,H,L  (1x)
Biol. Unit 2:  B,D,E  (1x)
Biol. Unit 3:  A (1x),B (1x),D (1x),E (1x),H (1x),L (1x)
Keywords :  Factor D, Complement, Antibody, Exosite, Fab, Chymotrypsin, Protease, Hydrolase-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. J. Katschke, P. Wu, R. Ganesan, R. F. Kelley, M. A. Mathieu, P. E. Hass J. Murray, D. Kirchhofer, C. Wiesmann, M. Van Lookeren Campagne
Inhibiting Alternative Pathway Complement Activation By Targeting The Factor D Exosite.
J. Biol. Chem. V. 287 12886 2012
PubMed-ID: 22362762  |  Reference-DOI: 10.1074/JBC.M112.345082

(-) Compounds

Molecule 1 - FACTOR D
    Chains: A, B
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Plasmid: PRK
    Expression System Taxid: 10029
    Organism Common: RHESUS MACAQUE,RHESUS MACAQUES,RHESUS MONKEYS
    Organism Scientific: MACACA MULATTA
    Organism Taxid: 9544
 
Molecule 2 - ANTI-FACTOR D, LIGHT CHAIN
    Chains: D, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - ANTI-FACTOR D, HEAVY CHAIN
    Chains: E, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: IGHG1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABDEHL
Biological Unit 1 (1x): A   HL
Biological Unit 2 (1x):  BDE  
Biological Unit 3 (1x): A (1x)B (1x)D (1x)E (1x)H (1x)L (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION
3ZN7Ligand/IonZINC ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 8)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:129A , VAL A:130 , VAL A:162 , LEU A:163 , ASP A:164 , ARG A:165 , MET A:181 , CYS A:182 , HOH A:492 , TYR H:54BINDING SITE FOR RESIDUE GOL A 301
02AC2SOFTWAREASN A:222 , LYS A:223A , LYS A:224 , ASP L:30 , ASP L:31 , ASP L:32 , ZN L:302BINDING SITE FOR RESIDUE GOL A 302
03AC3SOFTWAREHIS A:57 , ASP A:61BINDING SITE FOR RESIDUE ZN A 303
04AC4SOFTWAREARG A:150 , PRO A:152 , ASP A:153 , ARG A:154 , HOH A:500BINDING SITE FOR RESIDUE SO4 A 304
05AC5SOFTWARESER A:190 , SER A:195 , THR A:214 , ARG A:218 , HOH A:515BINDING SITE FOR RESIDUE SO4 A 305
06AC6SOFTWAREASP B:129A , VAL B:130 , VAL B:162 , LEU B:163 , ASP B:164 , ARG B:165 , MET B:181 , CYS B:182 , HOH B:445 , TYR E:54BINDING SITE FOR RESIDUE GOL B 301
07AC7SOFTWARELEU B:135 , LEU B:159 , VAL B:200 , CYS B:201 , GLY B:202 , GLY B:207BINDING SITE FOR RESIDUE GOL B 302
08AC8SOFTWAREGLN B:125 , ARG B:129 , ASP B:129A , GLU B:210 , HOH B:412 , HOH B:436 , HOH B:437 , HOH B:439BINDING SITE FOR RESIDUE GOL B 303
09AC9SOFTWAREHIS A:25 , GLU A:77 , GLU B:131BINDING SITE FOR RESIDUE ZN B 304
10BC1SOFTWAREARG B:150 , PRO B:152 , ASP B:153 , ARG B:154BINDING SITE FOR RESIDUE SO4 B 305
11BC2SOFTWAREARG B:170A , THR B:170B , LYS B:224 , ASP D:31 , ASP D:32BINDING SITE FOR RESIDUE GOL D 301
12BC3SOFTWARELEU D:54 , ARG D:55 , GLY D:57 , VAL D:58BINDING SITE FOR RESIDUE GOL D 302
13BC4SOFTWAREHIS A:146 , HOH A:407 , ASP D:1BINDING SITE FOR RESIDUE ZN D 303
14BC5SOFTWAREASN D:138 , HIS E:172BINDING SITE FOR RESIDUE ZN D 304
15BC6SOFTWAREGLY A:202 , HOH A:440 , LYS E:19 , SER E:71 , LEU E:72 , HOH E:450BINDING SITE FOR RESIDUE GOL E 301
16BC7SOFTWAREARG E:38 , GLU E:46 , ASP E:63 , ARG E:67 , PHE E:68 , HOH E:485BINDING SITE FOR RESIDUE GOL E 302
17BC8SOFTWAREGLN H:113 , GLY H:114 , THR H:115 , LEU H:116 , PRO H:157 , HOH H:433BINDING SITE FOR RESIDUE GOL H 301
18BC9SOFTWAREHIS H:172 , ASN L:138BINDING SITE FOR RESIDUE ZN H 302
19CC1SOFTWAREHOH D:505 , ASP L:28BINDING SITE FOR RESIDUE ZN L 301
20CC2SOFTWAREGOL A:302 , ASP L:31 , ASP L:32BINDING SITE FOR RESIDUE ZN L 302

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:42 -A:58
2A:136 -A:201
3A:168 -A:182
4A:191 -A:220
5B:42 -B:58
6B:136 -B:201
7B:168 -B:182
8B:191 -B:220
9D:23 -D:88
10D:134 -D:194
11E:22 -E:96
12E:148 -E:204
13H:22 -H:96
14H:148 -H:204
15L:23 -L:88
16L:134 -L:194

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Ser D:7 -Pro D:8
2Leu D:94 -Pro D:95
3Tyr D:140 -Pro D:141
4Phe E:154 -Pro E:155
5Glu E:156 -Pro E:157
6Phe H:154 -Pro H:155
7Glu H:156 -Pro H:157
8Ser L:7 -Pro L:8
9Leu L:94 -Pro L:95
10Tyr L:140 -Pro L:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D9Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D9Q)

(-) Exons   (0, 0)

(no "Exon" information available for 4D9Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
 aligned with F6YBP7_MACMU | F6YBP7 from UniProtKB/TrEMBL  Length:253

    Alignment length:228
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245        
        F6YBP7_MACMU     26 ILGGREAEAHARPYMASVQVNGEHLCGGVLLAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  253
               SCOP domains d4d9qa_ A: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee........eeeeee..eeeeeeee....eeeehhhhhhhhh...eeeee............eeeeeeeeee.............eeeee..........................eeeeee..............eeeeeeeehhhhhhh...........eeee..............eeee..eeeeee.............eeeee...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4d9q A   16 ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  243
                                    25        35|       46        56     |||63        73        83        93       103       113 ||   124A     | 133       143   ||  154       164      |172       182       192       202|      216       225       235        
                                              35|                      61A||                                                   115|   124A  129A               147|                  170A|                             202|             223A                    
                                               37                       61B|                                                    118                             149                   170B                              207                                     
                                                                         61C                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:228
 aligned with F6YBP7_MACMU | F6YBP7 from UniProtKB/TrEMBL  Length:253

    Alignment length:228
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245        
        F6YBP7_MACMU     26 ILGGREAEAHARPYMASVQVNGEHLCGGVLLAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  253
               SCOP domains d4d9qb_ B: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee........eeeeee..eeeeeeeeee..eeeehhhhhhhhh...eeeee............eeeeeeeeee.............eeeee..........................eeeeee..............eeeeeeeehhhhhh............eeee..............eeee..eeeeee.............eeeee...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4d9q B   16 ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  243
                                    25        35|       46        56     |||63        73        83        93       103       113 ||   124A     | 133       143   ||  154       164      |172       182       192       202|      216       225       235        
                                              35|                      61A||                                                   115|   124A  129A               147|                  170A|                             202|             223A                    
                                               37                       61B|                                                    118                             149                   170B                              207                                     
                                                                         61C                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:213
 aligned with Q8TCD0_HUMAN | Q8TCD0 from UniProtKB/TrEMBL  Length:239

    Alignment length:218
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        
        Q8TCD0_HUMAN     21 DVVMTQSPLSLPVTLGQPASISCRSTQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKITRVEAEDVGVYFCMQGTHWPSTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  238
               SCOP domains d4d9qd1 D:1-107 automated      matches                                                                          d4d9qd2 D:108-213 automated matches                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.-----......eeeeee......eeeee...ee.......eeee....eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d9q D    1 DIQVTQSPSSLSASVGDRVTITCITS-----TDIDDDMNWYQQKPGKVPKLLISGGNTLRPGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCLQSDSLPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20     |   - |      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205        
                                                    26    27                                                                                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee.....ee...eeeee........eeeee.....eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d9q E    1 EVQLVQSGPELKKPGASVKVSCKASGYTFTNYGMNWVRQAPGQGLEWMGWINTYTGETTYADDFKGRFVFSLDTSVSTAYLQISSLKAEDTAVYYCEREGGVNNWGQGTLVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS  223
                                    10        20        30        40        50        60        70        80        90       100||     116       126       136|      151       161       171       181       191       201       211       221  
                                                                                                                              101|                         136|                                                                                 
                                                                                                                               108                          142                                                                                 


Chain H from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee.....ee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh.....ee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4d9q H    1 EVQLVQSGPELKKPGASVKVSCKASGYTFTNYGMNWVRQAPGQGLEWMGWINTYTGETTYADDFKGRFVFSLDTSVSTAYLQISSLKAEDTAVYYCEREGGVNNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  222
                                    10        20        30        40        50        60        70        80        90       100||     116       126       136       146       156       166       176       186       196       206       216      
                                                                                                                              101|                                                                                                                  
                                                                                                                               108                                                                                                                  


Chain L from PDB  Type:PROTEIN  Length:213
 aligned with Q8TCD0_HUMAN | Q8TCD0 from UniProtKB/TrEMBL  Length:239

    Alignment length:218
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        
        Q8TCD0_HUMAN     21 DVVMTQSPLSLPVTLGQPASISCRSTQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKITRVEAEDVGVYFCMQGTHWPSTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  238
               SCOP domains d4d9ql1 L:1-107 automated      matches                                                                          d4d9ql2 L:108-213 automated matches                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.-----......eeeeee......eeeee...ee.......eeee....eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d9q L    1 DIQVTQSPSSLSASVGDRVTITCITS-----TDIDDDMNWYQQKPGKVPKLLISGGNTLRPGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCLQSDSLPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20     |   - |      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205        
                                                    26    27
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D9Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D9Q)

(-) Gene Ontology  (23, 27)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (F6YBP7_MACMU | F6YBP7)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain D,L   (Q8TCD0_HUMAN | Q8TCD0)

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    Leu D:94 - Pro D:95   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IGHG1_HUMAN | P01857: 1aj7 1aqk 1axs 1bey 1d5b 1d5i 1d6v 1dfb 1dn2 1e4k 1fc1 1fc2 1fcc 1gaf 1h3t 1h3u 1h3v 1h3w 1h3x 1h3y 1hkl 1hzh 1i7z 1l6x 1n7m 1op3 1oqo 1oqx 1pg7 1t83 1t89 1vge 2dts 2gj7 2i5y 2iwg 2j6e 2jb5 2jb6 2o5x 2o5y 2o5z 2osl 2qad 2ql1 2qqk 2qql 2qqn 2qr0 2r56 2rcj 2rcs 2vxq 2wah 3agv 3ave 3ay4 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3c2s 3cfj 3cfk 3csy 3d0l 3d0v 3d6g 3d85 3dj9 3dnk 3do3 3dro 3drq 3dvg 3dvn 3eyf 3eyo 3eyq 3fjt 3mcl 3o11 3ry6 3s7g 3sgj 3sgk 3tv3 3twc 3tyg 3u0w 3u7w 3u7y 3v7m 3v8c 3v95 3wjj 3wjl 3wkn 3wn5 4acp 4b7i 4bm7 4bsv 4bsw 4byh 4cdh 4d9r 4dag 4dz8 4eow 4hix 4j12 4ku1 4lld 4llm 4llq 4n0u 4nqs 4nqt 4nqu 4nwt 4nwu 4o4y 4o51 4q6y 4q74 4q7d 4w4n 4w4o 4wi2 4wi3 4wi4 4wi5 4wi6 4wi7 4wi8 4wi9 4x4m 4x98 4x99 4xmp 4xny 4xnz 4xxd 4zne 5bw7 5c7k 5d4q 5d6d 5di8 5dj0 5dj2 5dj6 5dj8 5dja 5djc 5djd 5djx 5djy 5djz 5dk0 5dk2 5dvk 5dvl 5dvm 5dvn 5dvo 5gsq 5hsf 5hy9 5hye 5hyf 5hyi 5iq7 5iq9 5iw3 5iw6 5jih 5jii 5jik 5k33 5k8d 5kwg 5m3v 5v43 5v4e
        Q8TCD0_HUMAN | Q8TCD0: 1hzh 1n0x 3mnv 3mnw 3mnz 3pgf 4nug 4nuj 4nwt 5viy 5vj6 5vod
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        Q8TCD0_HUMAN | Q8TCD0: 3cfj 3cfk 4nwu

(-) Related Entries Specified in the PDB File

4d9r CYNO FACTOR D IN COMPLEX WITH FAB