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(-) Description

Title :  CRYO-EM STRUCTURE OF A BG505 ENV-SCD4-17B-8ANC195 COMPLEX
 
Authors :  H. Wang, P. J. Bjorkman
Date :  30 Sep 16  (Deposition) - 16 Nov 16  (Release) - 30 Nov 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  8.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Keywords :  Cryo-Em, Hiv-1 Env, Cd4, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Wang, A. A. Cohen, R. P. Galimidi, H. B. Gristick, G. J. Jensen, P. J. Bjorkman
Cryo-Em Structure Of A Cd4-Bound Open Hiv-1 Envelope Trimer Reveals Structural Rearrangements Of The Gp120 V1V2 Loop.
Proc. Natl. Acad. Sci. Usa V. 113 E7151 2016
PubMed-ID: 27799557  |  Reference-DOI: 10.1073/PNAS.1615939113

(-) Compounds

Molecule 1 - BG505 SOSIP GP41
    Chains: A, B, C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293 6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 509-661
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 2 - BG505 SOSIP GP120
    Chains: D, E, F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293 6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: UNP RESIDUE 30-505
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 3 - T-CELL SURFACE GLYCOPROTEIN CD4
    Chains: G, H, I
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: HI5
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 26-207
    Gene: CD4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: T-CELL SURFACE ANTIGEN T4/LEU-3
 
Molecule 4 - 17B FAB VL DOMAIN
    Chains: J, K, L
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293 6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 5 - 17B FAB VH DOMAIN
    Chains: M, N, O
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293 6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 6 - 8ANC195 G52K5 VH DOMAIN
    Chains: P, R, T
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293 6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 7 - 8ANC195 G52K5 VL DOMAIN
    Chains: Q, S, U
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293 6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRSTU

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 42)

Asymmetric/Biological Unit (3, 42)
No.NameCountTypeFull Name
1BMA9Ligand/IonBETA-D-MANNOSE
2MAN15Ligand/IonALPHA-D-MANNOSE
3NAG18Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS D:232 , ASN D:234 , PRO D:238 , ILE D:277 , ASN T:28 , THR T:29 , ARG T:54 , TRP T:55 , SER T:57 , ILE T:69 , SER T:70 , ALA T:71 , VAL T:72 , ASP T:73 , THR T:75binding site for Poly-Saccharide residues NAG D 2340 through MAN D 2343 bound to ASN D 234
2AC2SOFTWAREGLU D:275 , ASN D:276 , ASN D:279 , LYS D:282 , GLN T:1 , TYR T:25 , GLY T:26 , GLY T:76binding site for Poly-Saccharide residues NAG D 2760 through MAN D 2764 bound to ASN D 276
3AC3SOFTWAREASN D:386 , SER D:388binding site for Poly-Saccharide residues NAG D 3860 through MAN D 3864 bound to ASN D 386
4AC4SOFTWARELYS E:232 , ASN E:234 , PRO E:238 , ILE E:277 , THR R:29 , ARG R:54 , TRP R:55 , SER R:70 , ASP R:73binding site for Poly-Saccharide residues NAG E 2340 through MAN E 2343 bound to ASN E 234
5AC5SOFTWAREGLU E:275 , ASN E:276 , ASN E:279 , LYS E:282 , GLN R:1 , HIS R:3 , TYR R:25 , GLY R:26 , ASN R:28 , GLY R:76 , PRO R:79binding site for Poly-Saccharide residues NAG E 2760 through MAN E 2764 bound to ASN E 276
6AC6SOFTWAREASN E:386 , SER E:388binding site for Poly-Saccharide residues NAG E 3860 through MAN E 3864 bound to ASN E 386
7AC7SOFTWARELYS F:232 , ASN F:234 , PRO F:238 , ILE F:277 , THR P:29 , TRP P:55 , SER P:70 , ASP P:73binding site for Poly-Saccharide residues NAG F 2340 through MAN F 2343 bound to ASN F 234
8AC8SOFTWAREGLU F:275 , ASN F:276 , ASN F:279 , LYS F:282 , GLN P:1 , HIS P:3 , TYR P:25 , GLY P:26 , ASN P:28 , GLY P:76binding site for Poly-Saccharide residues NAG F 2760 through MAN F 2764 bound to ASN F 276
9AC9SOFTWAREASN F:386 , SER F:388binding site for Poly-Saccharide residues NAG F 3860 through MAN F 3864 bound to ASN F 386

(-) SS Bonds  (42, 42)

Asymmetric/Biological Unit
No.Residues
1A:598 -A:604
2B:598 -B:604
3C:598 -C:604
4D:54 -D:74
5D:119 -D:205
6D:126 -D:196
7D:218 -D:247
8D:228 -D:239
9D:296 -D:331
10D:378 -D:445
11D:385 -D:418
12E:54 -E:74
13E:119 -E:205
14E:126 -E:196
15E:218 -E:247
16E:228 -E:239
17E:296 -E:331
18E:378 -E:445
19E:385 -E:418
20F:54 -F:74
21F:119 -F:205
22F:126 -F:196
23F:218 -F:247
24F:228 -F:239
25F:296 -F:331
26F:378 -F:445
27F:385 -F:418
28G:16 -G:84
29H:16 -H:84
30I:16 -I:84
31J:23 -J:88
32K:23 -K:88
33L:23 -L:88
34M:22 -M:96
35N:22 -N:96
36O:22 -O:96
37P:22 -P:99
38Q:23 -Q:89
39R:22 -R:99
40S:23 -S:89
41T:22 -T:99
42U:23 -U:89

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Ser D:460 -Thr D:461
2Ser E:460 -Thr E:461
3Ser F:460 -Thr F:461
4Trp J:94 -Pro J:95
5Trp K:94 -Pro K:95
6Trp L:94 -Pro L:95
7Ser Q:7 -Pro Q:8
8Tyr Q:95 -Pro Q:96
9Ser S:7 -Pro S:8
10Tyr S:95 -Pro S:96
11Ser U:7 -Pro U:8
12Tyr U:95 -Pro U:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5THR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5THR)

(-) Exons   (0, 0)

(no "Exon" information available for 5THR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.......................hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr A 520 LGFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD 664
                                   529       539       570       580       590       600       610       620       630       640       650       660    
                                                     547|                                                                                               
                                                      569                                                                                               


Chain B from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.......................hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr B 521 GFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD 664
                                   530       540      |571       581       591       601       611       621       631       641       651       661   
                                                    547|                                                                                               
                                                     569                                                                                               


Chain C from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.......................hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr C 521 GFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD 664
                                   530       540      |571       581       591       601       611       621       631       641       651       661   
                                                    547|                                                                                               
                                                     569                                                                                               


Chain D from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.........ee.....eee...........................eeee....eee......hhhhhhhhhhhhhhhh....eeeeee....eeeeee.............eee.....eeeee........eee..eeee.........................ee...........eeee....eeeee..eee.hhhhhhhhhhhhhhhhhhh....eeee......hhhhhh............................eee............................eeeee..eeeee........eeeee....hhhhhhhhhh....eee.......ee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr D  31 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVNCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV 505
                                    40        50        60        70        80        90       100       110       120      |197       207       217       227       237       247       257       267       277       287       297|      339       349       359       369       379       389       411       421       431       441       451       461       471       481       491       501    
                                                                                                                          127|                                                                                                   297|                                                                 398|                                                                                              
                                                                                                                           195                                                                                                    330                                                                  411                                                                                              


Chain E from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.........ee.....eee...........................eeee....eee......hhhhhhhhhhhhhhhh....eeeeee....eeeeee.............eee.....eeeee........eee..eeee.........................ee...........eeee....eeeee..eee.hhhhhhhhhhhhhhhhhhh....eeee......hhhhhh............................eee............................eeeee..eeeee........eeeee....hhhhhhhhhh....eee.......ee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr E  31 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVNCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV 505
                                    40        50        60        70        80        90       100       110       120      |197       207       217       227       237       247       257       267       277       287       297|      339       349       359       369       379       389       411       421       431       441       451       461       471       481       491       501    
                                                                                                                          127|                                                                                                   297|                                                                 398|                                                                                              
                                                                                                                           195                                                                                                    330                                                                  411                                                                                              


Chain F from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.........ee.....eee...........................eeee....eee......hhhhhhhhhhhhhhhh....eeeeee....eeeeee.............eee.....eeeee........eee..eeee.........................ee...........eeee....eeeee..eee.hhhhhhhhhhhhhhhhhhh....eeee......hhhhhh............................eee............................eeeee..eeeee........eeeee....hhhhhhhhhh....eee.......ee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr F  31 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVNCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV 505
                                    40        50        60        70        80        90       100       110       120      |197       207       217       227       237       247       257       267       277       287       297|      339       349       359       369       379       389       411       421       431       441       451       461       471       481       491       501    
                                                                                                                          127|                                                                                                   297|                                                                 398|                                                                                              
                                                                                                                           195                                                                                                    330                                                                  411                                                                                              


Chain G from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eee............eee.....eeeee....ee.........ee............eee...........eee.......eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 5thr G   1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVF  98
                                    10        20        30        40        50        60        70        80        90        


Chain H from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eee............eee.....eeeee....ee.........ee............eee...........eee.......eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 5thr H   1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVF  98
                                    10        20        30        40        50        60        70        80        90        


Chain I from PDB  Type:PROTEIN  Length:97
                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee......eee............eee.....eeeee....ee.........ee............eee...........eee.......eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 5thr I   1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV  97
                                    10        20        30        40        50        60        70        80        90       


Chain J from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eee.........eeeeee.....eeeeee............eeee.....eeeee.........eeeeee.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5thr J   1 DIMTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEI 108
                             ||     11        21        31        41        51        61        71        81        91       101       
                             2|                                                                                                        
                              4                                                                                                        


Chain K from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eee.........eeeeee.....eeeeee............eeee.....eeeee.........eeeeee.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5thr K   1 DIMTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEI 108
                             ||     11        21        31        41        51        61        71        81        91       101       
                             2|                                                                                                        
                              4                                                                                                        


Chain L from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eee.........eeeeee.....eeeeee............eeee.....eeeee.........eeeeee.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5thr L   1 DIMTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEI 108
                             ||     11        21        31        41        51        61        71        81        91       101       
                             2|                                                                                                        
                              4                                                                                                        


Chain M from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....ee.....eee.eeeee......eeeee.........eeeeee....ee.........eeeeee....eeeeee...hhhhheeeeee........................eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr M   1 EVQLVESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVS 127
                                    10        20        30        40        50        60        70        80        90       100       110       120       


Chain N from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....ee.....eee.eeeee......eeeee.........eeeeee....ee.........eeeeee....eeeeee...hhhhheeeeee........................eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr N   1 EVQLVESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVS 127
                                    10        20        30        40        50        60        70        80        90       100       110       120       


Chain O from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....ee.....eee.eeeee......eeeee.........eeeeee....ee.........eeeeee....eeeeee...hhhhheeeeee........................eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr O   1 EVQLVESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVS 127
                                    10        20        30        40        50        60        70        80        90       100       110       120       


Chain P from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...........eee.eee...........eeeee.....eeeeee......ee.......ee..ee........ee.eee...hhhhheee..............ee..ee........eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr P   1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDKWSGLHHDGVMAFSSWGQGTLISVS 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 


Chain Q from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eee......eeeeee.........eee.............................eee..eeeeee.........ee.eee...........eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5thr Q   1 DIQMTQSPSTLSASIGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFSGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEV 107
                                    10        20        30        40        50        60        70        80        90       100       


Chain R from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...........eee.eee...........eeeee.....eeeeee......ee.......ee..ee........ee.eee...hhhhheee..............ee..ee........eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr R   1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDKWSGLHHDGVMAFSSWGQGTLISVS 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 


Chain S from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eee......eeeeee.........eee.............................eee..eeeeee.........ee.eee...........eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5thr S   1 DIQMTQSPSTLSASIGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFSGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEV 107
                                    10        20        30        40        50        60        70        80        90       100       


Chain T from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...........eee.eee...........eeeee.....eeeeee......ee.......ee..ee........ee.eee...hhhhheee..............ee..ee........eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5thr T   1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDKWSGLHHDGVMAFSSWGQGTLISVS 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 


Chain U from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eee......eeeeee.........eee.............................eee..eeeeee.........ee.eee...........eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5thr U   1 DIQMTQSPSTLSASIGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFSGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEV 107
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5THR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5THR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5THR)

(-) Gene Ontology  (66, 69)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CD4_HUMAN | P01730: 1cdh 1cdi 1cdj 1cdu 1cdy 1g9m 1g9n 1gc1 1jl4 1opn 1opt 1opw 1q68 1rzj 1rzk 1wbr 1wio 1wip 1wiq 2b4c 2jkr 2jkt 2klu 2nxy 2nxz 2ny0 2ny1 2ny2 2ny3 2ny4 2ny5 2ny6 2qad 3b71 3cd4 3j70 3jcb 3jcc 3jwd 3jwo 3lqa 3o2d 3s4s 3s5l 3t0e 4h8w 4jm2 4p9h 4q6i 4r2g 4r4h 4rqs 5a7x 5a8h 5cay 5u1f 5vn3
        Q2N0S6_9HIV1 | Q2N0S6: 5v7j 5v8l 5v8m 5viy 5vj6 5w6d
UniProtKB/TrEMBL
        Q2N0S6_9HIV1 | Q2N0S6: 3j5m 4nco 4zmj 5aco 5c7k 5cez 5cjx 5d9q 5fyl 5i8h 5js9 5jsa 5t3s 5t3x 5t3z 5u1f 5utf 5uty

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5THR)