5CEZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE BG505 SOSIP GP140 HIV-1 ENV TRIMER IN COMPLEX WITH AN EARLY PUTATIVE PRECURSOR OF THE PGT121 FAMILY AT 3.0 ANGSTROM

Authors :   I. A. Wilson, F. Garces

Date :   08 Jul 15 (Deposition) - 23 Dec 15 (Release) - 28 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.03

Chains :   Asym. Unit : B,D,E,G,H,L
Biol. Unit 1: G,H,L  (1x)
Biol. Unit 2: B,D,E  (1x)

Keywords :   Hiv-1, Antibody, Immune System, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Garces, J. H. Lee, N. De Val, A. Torrents De La Pena, L. Kong, C. Puchades, Y. Hua, R. L. Stanfield, D. R. Burton, J. P. Moore, R. W. Sanders, A. B. Ward, I. A. Wilson
Affinity Maturation Of A Potent Family Of Hiv Antibodies Is Primarily Focused On Accommodating Or Avoiding Glycans.
Immunity V. 43 1053 2015
PubMed-ID: 26682982 | Reference-DOI: 10.1016/J.IMMUNI.2015.11.007

Molecule 1 - ENVELOPE GLYCOPROTEIN GP160
	Chains	:	G
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Fragment	:	UNP RESIDUES 31-505
	Gene	:	ENV
	Mutation	:	YES
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676
	Synonym	:	ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 13-1 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 18 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 19 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 21 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 25 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 6 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 7 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 8 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 9 ENV POLYPROTEIN,ENVELOPE GLYCOPROTEIN GP160

Molecule 2 - ENVELOPE GLYCOPROTEIN GP160
	Chains	:	B
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Fragment	:	UNP RESIDUES 509-661
	Gene	:	ENV
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676
	Synonym	:	ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 13-1 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 18 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 19 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 21 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 25 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 6 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 7 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 8 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 9 ENV POLYPROTEIN,ENVELOPE GLYCOPROTEIN GP160

Molecule 3 - 3H+109L FAB LIGHT CHAIN
	Chains	:	L
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 4 - 3H+109L FAB HEAVY CHAIN
	Chains	:	H
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 5 - 35022 FAB HEAVY CHAIN
	Chains	:	D
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 6 - 35022 FAB LIGHT CHAIN
	Chains	:	E
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Taxid	:	9606
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric Unit	:	B	D	E	G	H	L
Biological Unit 1 (1x)	:				G	H	L
Biological Unit 2 (1x)	:	B	D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 51)

No.	Name	Count	Type	Full Name
1	BMA	5	Ligand/Ion	BETA-D-MANNOSE
2	MAN	18	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	28	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (3, 47)

No.	Name	Count	Type	Full Name
1	BMA	5	Ligand/Ion	BETA-D-MANNOSE
2	MAN	17	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	25	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	BMA	-1	Ligand/Ion	BETA-D-MANNOSE
2	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	3	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	BMA L:303 , MAN L:304	binding site for residue MAN H 301
02	AC2	SOFTWARE	ASP D:56 , LYS D:57 , ASN D:58 , MAN G:636	binding site for residue MAN D 301
03	AC3	SOFTWARE	ASN B:611 , SER B:613	binding site for Mono-Saccharide NAG B 703 bound to ASN B 611
04	AC4	SOFTWARE	ASN B:616 , ASN B:618	binding site for Mono-Saccharide NAG B 702 bound to ASN B 618
05	AC5	SOFTWARE	ASN B:637	binding site for Mono-Saccharide NAG B 701 bound to ASN B 637
06	AC6	SOFTWARE	GLY B:527 , SER B:528 , ASN D:30 , PHE D:31 , HIS D:33 , SER D:52 , ASP D:56 , ARG D:98 , ASP D:99 , GLY D:100 , SER D:100A , THR D:100C , MAN D:301 , HIS E:95 , ASN E:96 , GLU G:87 , ASN G:88	binding site for Poly-Saccharide residues NAG G 632 through MAN G 637 bound to ASN G 88
07	AC7	SOFTWARE	ASN G:133	binding site for Poly-Saccharide residues NAG G 621 through NAG G 622 bound to ASN G 133
08	AC8	SOFTWARE	VAL G:134 , ASN G:156 , TYR G:173	binding site for Poly-Saccharide residues NAG G 623 through MAN G 627 bound to ASN G 156
09	AC9	SOFTWARE	THR G:128 , GLN G:130 , SER G:158 , ASN G:160	binding site for Mono-Saccharide NAG G 610 bound to ASN G 160
10	AD1	SOFTWARE	ARG G:192 , ILE G:194 , ASN G:197	binding site for Poly-Saccharide residues NAG G 619 through NAG G 620 bound to ASN G 197
11	AD2	SOFTWARE	VAL D:72E , ASN G:234 , THR G:236 , SER G:274	binding site for Poly-Saccharide residues NAG G 617 through NAG G 618 bound to ASN G 234
12	AD3	SOFTWARE	THR G:63 , GLU G:64 , SER G:209 , PRO G:212 , ASN G:262 , ASN G:377 , CYS G:378 , GLY G:379 , CYS G:445 , VAL G:446 , SER G:447 , NAG G:608	binding site for Poly-Saccharide residues NAG G 601 through MAN G 607 bound to ASN G 262
13	AD4	SOFTWARE	ASN G:276 , THR G:278 , ASN G:279	binding site for Mono-Saccharide NAG G 611 bound to ASN G 276
14	AD5	SOFTWARE	ASN G:295 , ASN G:332 , SER G:334 , ARG G:444	binding site for Poly-Saccharide residues NAG G 612 through NAG G 613 bound to ASN G 295
15	AD6	SOFTWARE	ASN G:301 , ILE G:323 , VAL G:442	binding site for Poly-Saccharide residues NAG G 628 through MAN G 631 bound to ASN G 301
16	AD7	SOFTWARE	ARG G:327 , HIS G:330 , ASN G:332 , ARG G:444 , ARG H:100 , ILE H:100A , GLY H:100C , MET H:100D , VAL H:100E , MAN H:301 , SER L:30 , ASN L:50 , ASN L:51 , ASP L:53 , PRO L:66 , ASP L:67 , ILE L:67A	binding site for Poly-Saccharide residues GLN L 52 through MAN L 309 bound to ASN G 332
17	AD8	SOFTWARE	ASN G:363 , SER G:364 , ASN G:386 , SER G:388 , NAG G:614	binding site for Mono-Saccharide NAG G 616 bound to ASN G 363
18	AD9	SOFTWARE	ASN G:386 , NAG G:616	binding site for Poly-Saccharide residues NAG G 614 through NAG G 615 bound to ASN G 386
19	AE1	SOFTWARE	PRO G:291 , ASN G:448 , NAG G:601	binding site for Poly-Saccharide residues NAG G 608 through NAG G 609 bound to ASN G 448

Asymmetric Unit

No.	Residues
1	B:598	-	B:604
2	D:22	-	D:92
3	D:140	-	D:196
4	E:22	-	E:90
5	E:91	-	E:99
6	E:138	-	E:197
7	G:54	-	G:74
8	G:119	-	G:205
9	G:126	-	G:196
10	G:131	-	G:157
11	G:218	-	G:247
12	G:228	-	G:239
13	G:296	-	G:331
14	G:378	-	G:445
15	G:385	-	G:418
16	G:501	-	B:605
17	H:22	-	H:92
18	H:138	-	H:194
19	L:23	-	L:88
20	L:135	-	L:194

Asymmetric Unit

No.	Residues
1	Asn G:188	-	Lys G:189
2	Ser B:546	-	Gly B:547
3	Ser B:553	-	Asn B:554
4	Ala B:558	-	Pro B:559
5	Tyr L:141	-	Pro L:142
6	Phe H:144	-	Pro H:145
7	Glu H:146	-	Pro H:147
8	Leu H:187	-	Gly H:188
9	Gly H:188	-	Thr H:189
10	Phe D:146	-	Pro D:147
11	Glu D:148	-	Pro D:149
12	Ala E:131	-	Asn E:132
13	Tyr E:144	-	Pro E:145

(no "SAP(SNP)/Variant" information available for 5CEZ)

(no "PROSITE Motif" information available for 5CEZ)

(no "Exon" information available for 5CEZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain B from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh.hhhhhhhh.........................hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cez B  518 VFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   527       537       547       557       567       577       587       597       607       617       627       637       647       657

Chain D from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeeeeehhhhh.eeeeeee...eeeeeeee......eee.hhhh..eeeee...ee.....eeeeeeeee...hhhhheeeeeee.............ee...eeeee........eeeeeeeeeee....eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.........eeeeeehhhheeeeee......hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5cez D    1 EGQLVQSGAELKKPGASVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVIMTTDTEVPVTSFTSTGAAYMEIRNLKFDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKGLEV  222
                                    10        20        30        40        50  |     59        69   ||||72G|       81 |||    88        98  |||||102       112       122       132       142       152       162       172       182       192       202       212       222
                                                                              52A                  72A|||||||        82A||               100A|||||                                                                                                                          
                                                                                                    72B||||||         82B|                100B||||                                                                                                                          
                                                                                                     72C|||||          82C                 100C|||                                                                                                                          
                                                                                                      72D||||                               100D||                                                                                                                          
                                                                                                       72E|||                                100E|                                                                                                                          
                                                                                                        72F||                                 100F                                                                                                                          
                                                                                                         72G|                                                                                                                                                               
                                                                                                          72H

Chain E from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..eeeee....eeeeee.....hhhhheeeeee.......eeee.............eeeee...eeeeee...hhhhh.eeeeeee......ee...eeeeee.......eeeee..hhhhhh...eeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeeehhhhhhh...eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cez E    2 SVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  214
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Chain G from PDB  Type:PROTEIN  Length:452
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eee.....eee...........................eeee....eee....hhhhhhhhhhhhhhhhhhhh....hhhhhh.eeeee..........eeeeeeee......eeeeeeeehhh.eee.....eeee.hhhh..eee............eee....eeeeee........eee..eeee..............ee.........eeee.........eeeeeeeeeeeeeeeeeee.eeeee.....eeeee..........eeeehhhhhhhhhhhhhhhhhhhh....eeee......hhhhhheeeee..eeeee.......eee.......eeeeeeee.eehhhhh...eee.....eeeeeeeeeeeeeeee........eeeeee....hhhhhhhhhh.eeeeee..eeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cez G   32 ENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNAITDGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVG  507
                                    41        51        61        71        81        91       101       111       121       131       152       162       172       182  ||   193       203       213       223       233       243       253       263       273       283       293       303     ||315      |324       334       344       354       364       374       384       394   ||  415       425       435       445       455       465       475       485       495       505  
                                                                                                                                      140|                              185|                                                                                                                       309|      321A                                                                          398|                                                                                                 
                                                                                                                                       152                               187                                                                                                                        312                                                                                     410

Chain H from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...ee.....eeeeeee...hhhhheeeeeee.....eeeeeee.....eee.......eeeee.....eeeeee...hhhhheeeeeeeeeeeeee........eeeeeeeeee...eeeee.........eeee.........eeeeeeeeeee.....eeee........eee...ee.....eeeeeeeeee.........eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cez H    1 QVQLQESGPGLVKPSETLSLTCTVSGGSISNYYWSWIRQSPGKGLEWIGYISDSESTNYNPSLKSRVIISVDTSKNQLSLKLNSVTAADSAIYYCARAQQGKRIYGMVSFGEFFYYYYMDVWGKGTTVTVSSASTKGPSVFPLAPSSSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  211
                                    10        20        30        40        50        60        70        80  |||   87        97   |||100G||||||100Q|      109       119      |130       140       150       160       170       180       190       200       210 
                                                                                                            82A||               100A|||||100J||||||||                       126|                                                                                   
                                                                                                             82B|                100B|||||100K|||||||                        128                                                                                   
                                                                                                              82C                 100C|||||100L||||||                                                                                                              
                                                                                                                                   100D|||||100M|||||                                                                                                              
                                                                                                                                    100E|||| 100N||||                                                                                                              
                                                                                                                                     100F|||  100O|||                                                                                                              
                                                                                                                                      100G||   100P||                                                                                                              
                                                                                                                                       100H|    100Q|                                                                                                              
                                                                                                                                        100I     100R

Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeee...........eeeee......eeee.............eee..........eeee........eeeeee...............eeeeee.......eeeee..hhhhhhh..eeeeeeeeee....eeeeeee..ee....eee...ee.....eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cez L    6 SYVRPLSVALGETASISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT  210
                                    15        25        35        45        55        65  |||   72        82        92   |||  99       109       119       129       139       149       159       169       179       189       199       209 
                                                                                        67A||                          95A||                                                                                                                   
                                                                                         67B|                           95B|                                                                                                                   
                                                                                          67C                            95C

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5CEZ)

(no "CATH Domain" information available for 5CEZ)

(no "Pfam Domain" information available for 5CEZ)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		BMA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		AD1	[ RasMol ]	+environment [ RasMol ]
		AD2	[ RasMol ]	+environment [ RasMol ]
		AD3	[ RasMol ]	+environment [ RasMol ]
		AD4	[ RasMol ]	+environment [ RasMol ]
		AD5	[ RasMol ]	+environment [ RasMol ]
		AD6	[ RasMol ]	+environment [ RasMol ]
		AD7	[ RasMol ]	+environment [ RasMol ]
		AD8	[ RasMol ]	+environment [ RasMol ]
		AD9	[ RasMol ]	+environment [ RasMol ]
		AE1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala B:558 - Pro B:559	[ RasMol ]
		Ala E:131 - Asn E:132	[ RasMol ]
		Asn G:188 - Lys G:189	[ RasMol ]
		Glu D:148 - Pro D:149	[ RasMol ]
		Glu H:146 - Pro H:147	[ RasMol ]
		Gly H:188 - Thr H:189	[ RasMol ]
		Leu H:187 - Gly H:188	[ RasMol ]
		Phe D:146 - Pro D:147	[ RasMol ]
		Phe H:144 - Pro H:145	[ RasMol ]
		Ser B:546 - Gly B:547	[ RasMol ]
		Ser B:553 - Asn B:554	[ RasMol ]
		Tyr E:144 - Pro E:145	[ RasMol ]
		Tyr L:141 - Pro L:142	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	5cez
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q2N0S6_9HIV1 \| Q2N0S6
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q2N0S6_9HIV1 \| Q2N0S6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	Q2N0S6_9HIV1 \| Q2N0S6	:	5v7j 5v8l 5v8m 5viy 5vj6 5w6d
UniProtKB/TrEMBL
	Q2N0S6_9HIV1 \| Q2N0S6	:	3j5m 4nco 4zmj 5aco 5c7k 5cjx 5d9q 5fyl 5i8h 5js9 5jsa 5t3s 5t3x 5t3z 5thr 5u1f 5utf 5uty

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 51)

Sites (19, 19)

SS Bonds (20, 20)

Cis Peptide Bonds (13, 13)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File