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(-) Description

Title :  CRYSTAL STRUCTURE OF 8ANC195 FAB IN COMPLEX WITH BG505 SOSIP.664 HIV-1 ENV TRIMER
 
Authors :  L. Scharf, P. J. Bjorkman
Date :  15 Jul 15  (Deposition) - 23 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.58
Chains :  Asym./Biol. Unit :  A,B,C,D,E,G,H,J,K,L,X,Y
Keywords :  Hiv-1 Env Trimer, Ig Fold, Antibody, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Scharf, H. Wang, H. Gao, S. Chen, A. W. Mcdowall, P. J. Bjorkman
Broadly Neutralizing Antibody 8Anc195 Recognizes Closed And Open States Of Hiv-1 Env.
Cell V. 162 1379 2015
PubMed-ID: 26359989  |  Reference-DOI: 10.1016/J.CELL.2015.08.035

(-) Compounds

Molecule 1 - 8ANC195 G52K5 HEAVY CHAIN, IG GAMMA-1 CHAIN
    Chains: A, D, H
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293-6
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - BG505 ENV GP41
    Chains: B, J, X
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293-6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 509-661
    Gene: ENV
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 3 - 8ANC195 G52K5 LIGHT CHAIN
    Chains: C, E, L
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293-6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 4 - BG505 ENV GP120
    Chains: G, K, Y
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293-6E
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-505
    Gene: ENV
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEGHJKLXY

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 82)

Asymmetric/Biological Unit (3, 82)
No.NameCountTypeFull Name
1BMA11Ligand/IonBETA-D-MANNOSE
2MAN33Ligand/IonALPHA-D-MANNOSE
3NAG38Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:15 , ASN A:82Bbinding site for residue NAG A 1000
02AC2SOFTWAREASN B:611 , ILE B:641 , ALA D:158binding site for Mono-Saccharide NAG B 1040 bound to ASN B 611
03AC3SOFTWAREASN B:637 , SER H:100B , ARG L:50 , ALA L:52 , ALA L:53 , LEU L:54binding site for Poly-Saccharide residues NAG B 1030 through MAN B 1034 bound to ASN B 637
04AC4SOFTWAREASN G:234 , ILE G:277 , HIS G:352 , THR H:19 , TRP H:55 , SER H:57 , SER H:58 , ALA H:59 , GLY H:65 , VAL H:67 , ILE H:69 , SER H:70 , ALA H:71 , VAL H:72 , ASP H:73 , SER H:79 , GLU H:81binding site for Poly-Saccharide residues NAG G 1000 through MAN G 1009 bound to ASN G 234
05AC5SOFTWAREPRO G:212 , VAL G:254 , ASN G:262 , VAL G:446 , SER G:447binding site for Poly-Saccharide residues NAG G 1042 through NAG G 1043 bound to ASN G 262
06AC6SOFTWAREASN G:276 , THR G:278 , ASN G:279 , GLN H:1 , HIS H:3 , TYR H:25 , GLY H:26binding site for Poly-Saccharide residues NAG G 1020 through MAN G 1025 bound to ASN G 276
07AC7SOFTWAREASN G:295 , VAL G:333 , SER G:334binding site for Poly-Saccharide residues NAG G 1040 through NAG G 1041 bound to ASN G 295
08AC8SOFTWAREASN H:82B , ASN K:356binding site for Poly-Saccharide residues NAG H 1000 through NAG H 1001 bound to ASN H 82B
09AC9SOFTWAREASN J:611 , TRP J:614 , TYR J:638binding site for Mono-Saccharide NAG J 1042 bound to ASN J 611
10AD1SOFTWAREASN J:618binding site for Poly-Saccharide residues NAG J 1040 through NAG J 1041 bound to ASN J 618
11AD2SOFTWARETRP A:100A , GLY A:100C , TYR C:49 , ARG C:50 , ALA C:52 , ALA C:53 , SER J:636 , ASN J:637binding site for Poly-Saccharide residues NAG J 1030 through MAN J 1033 bound to ASN J 637
12AD3SOFTWARETHR A:19 , TRP A:55 , SER A:57 , SER A:58 , ALA A:59 , GLY A:65 , VAL A:67 , LEU A:68 , ILE A:69 , SER A:70 , VAL A:72 , ASP A:73 , SER A:79 , GLU A:81 , ASN K:234 , ILE K:277 , HIS K:352binding site for Poly-Saccharide residues NAG K 1000 through MAN K 1009 bound to ASN K 234
13AD4SOFTWAREPRO K:212 , VAL K:254 , ASN K:262 , ASN K:377 , VAL K:446 , SER K:447binding site for Poly-Saccharide residues NAG K 1041 through BMA K 1043 bound to ASN K 262
14AD5SOFTWAREGLN A:1 , HIS A:3 , TYR A:25 , GLY A:26 , PRO A:77B , ASN K:276 , THR K:278 , ASN K:279binding site for Poly-Saccharide residues NAG K 1020 through MAN K 1025 bound to ASN K 276
15AD6SOFTWAREGLN K:293 , ASN K:295binding site for Mono-Saccharide NAG K 1040 bound to ASN K 295
16AD7SOFTWAREALA E:67 , ASN X:611 , SER X:613binding site for Poly-Saccharide residues NAG X 1040 through NAG X 1041 bound to ASN X 611
17AD8SOFTWARETRP D:100A , SER D:100B , TYR E:49 , ALA E:52 , ALA E:53 , SER X:636 , ASN X:637binding site for Poly-Saccharide residues NAG X 1030 through MAN X 1033 bound to ASN X 637
18AD9SOFTWARETHR D:19 , TRP D:55 , SER D:57 , SER D:58 , ALA D:59 , ARG D:64 , GLY D:65 , VAL D:67 , LEU D:68 , ILE D:69 , SER D:70 , ALA D:71 , VAL D:72 , ASP D:73 , SER D:79 , GLU D:81 , ASN Y:234 , HIS Y:352binding site for Poly-Saccharide residues NAG Y 1000 through MAN Y 1009 bound to ASN Y 234
19AE1SOFTWAREPRO Y:212 , ASN Y:262 , SER Y:447 , NAG Y:1041binding site for Poly-Saccharide residues NAG Y 1042 through BMA Y 1044 bound to ASN Y 262
20AE2SOFTWAREGLN D:1 , TYR D:25 , SER D:77 , PRO D:77B , ASN Y:276 , THR Y:278 , ASN Y:279binding site for Poly-Saccharide residues NAG Y 1020 through MAN Y 1024 bound to ASN Y 276
21AE3SOFTWAREASN Y:295 , VAL Y:446binding site for Mono-Saccharide NAG Y 1040 bound to ASN Y 295
22AE4SOFTWARELEU Y:265 , PRO Y:291 , ASN Y:448 , NAG Y:1042binding site for Mono-Saccharide NAG Y 1041 bound to ASN Y 448

(-) SS Bonds  (40, 40)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:92
2A:140 -A:196
3B:605 -G:501
4C:23 -C:88
5C:134 -C:194
6D:22 -D:92
7D:140 -D:196
8E:23 -E:88
9E:134 -E:194
10G:54 -G:74
11G:119 -G:205
12G:131 -G:157
13G:218 -G:247
14G:228 -G:239
15G:378 -G:445
16G:385 -G:418
17H:22 -H:92
18H:140 -H:196
19J:605 -K:501
20K:54 -K:74
21K:119 -K:205
22K:126 -K:196
23K:131 -K:157
24K:218 -K:247
25K:228 -K:239
26K:296 -K:331
27K:378 -K:445
28K:385 -K:418
29L:23 -L:88
30L:134 -L:194
31X:598 -X:604
32X:605 -Y:501
33Y:54 -Y:74
34Y:119 -Y:205
35Y:126 -Y:196
36Y:131 -Y:157
37Y:218 -Y:247
38Y:228 -Y:239
39Y:378 -Y:445
40Y:385 -Y:418

(-) Cis Peptide Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1Phe A:146 -Pro A:147
2Glu A:148 -Pro A:149
3Ser C:7 -Pro C:8
4Tyr C:94 -Pro C:95
5Tyr C:140 -Pro C:141
6Phe D:146 -Pro D:147
7Glu D:148 -Pro D:149
8Ser E:7 -Pro E:8
9Tyr E:94 -Pro E:95
10Tyr E:140 -Pro E:141
11Gly G:312 -Pro G:313
12Phe H:146 -Pro H:147
13Glu H:148 -Pro H:149
14Gly K:312 -Pro K:313
15Ser L:7 -Pro L:8
16Tyr L:94 -Pro L:95
17Tyr L:140 -Pro L:141
18Gly Y:312 -Pro Y:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CJX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CJX)

(-) Exons   (0, 0)

(no "Exon" information available for 5CJX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee.......eeeeeeee.....eeeeeeee..eeee.......eeeeee........eeeeee...hhhhheeeeeeeee........ee..ee...ee...eeeee........eeeee...eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx A    1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  213
                                    10        20        30     |  39        49  ||    60        70       77C|     ||83        93      100C|||||||101       111       121    || 139       149       159       169       179       189       199       209    
                                                             35A               52|                     77A|||   82A||               100A|||||100J||                       126|                                                                              
                                                                                54                      77B||    82B|                100B|||||100K|                        135                                                                              
                                                                                                         77C|     82C                 100C|||||100L                                                                                                         
                                                                                                          77D                          100D|||||                                                                                                            
                                                                                                                                        100E||||                                                                                                            
                                                                                                                                         100F|||                                                                                                            
                                                                                                                                          100G||                                                                                                            
                                                                                                                                           100H|                                                                                                            
                                                                                                                                            100I                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:124
                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh.hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhh..hhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx B  519 FLGFLGAAGSTMGAASMTLTVQARNLLSTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   528       538       570       580       590       600       610       620       630       640       650       660    
                                                     546|                                                                                               
                                                      569                                                                                               


Chain C from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx C    1 DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30|       39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                        30A                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee.......eeeeeeee.....eeeeeeee..ee.........eeeeee........eeeeee...hhhhheeeeeeeee........ee..ee...ee...eeeee........eeeee...eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx D    1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP  213
                                    10        20        30     |  39        49  ||    60        70       77C|     ||83        93      100C|||||||101       111       121    || 139       149       159       169       179       189       199       209    
                                                             35A               52|                     77A|||   82A||               100A|||||100J||                       126|                                                                              
                                                                                54                      77B||    82B|                100B|||||100K|                        135                                                                              
                                                                                                         77C|     82C                 100C|||||100L                                                                                                         
                                                                                                          77D                          100D|||||                                                                                                            
                                                                                                                                        100E||||                                                                                                            
                                                                                                                                         100F|||                                                                                                            
                                                                                                                                          100G||                                                                                                            
                                                                                                                                           100H|                                                                                                            
                                                                                                                                            100I                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee........eeeeee......eeeee...ee.......eeeeee..eeeeee........eeeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx E    1 DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30|       39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                        30A                                                                                                                                                                                       


Chain G from PDB  Type:PROTEIN  Length:398
                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eee.....eee.................eee....eeee...hhhhhhhhhhhhhhhhhhhh...............eeeeeeeee......eeeeeeeee.hhh.hhhhhhh..ee............eee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee......eee.......eee..hhhhhhhhhhhhhhhhhhhh....eeee......hhhhhh..eee..eeeee.......eee.......eee..eehhhhh....ee.......eeeeeeeeeeeeee....eeeeee....hhhhhhhhhh.eeeeee..eeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx G   33 NLWVTVYYGVPVWKDAETTLFCASDWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLQCTNRGELKNCSFNMTTELRDKKQKVYSLFYRLDVRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52    ||  73        83        93       103       113       123 ||  ||154       164       174      |194       204       214       224       234       244       254       264       274       284       294       304    || 316   ||  338       348       358       368       378       388       398|      423       433       443       453    || 467       477       487       497        
                                                   57|                                                     125|  ||                           181|                                                                                                                  309|     320|                                                              398|                                         458|                                          
                                                    69                                                      130  ||                            192                                                                                                                   312      333                                                               414                                          463                                          
                                                                                                               133|                                                                                                                                                                                                                                                                                                                       
                                                                                                                151                                                                                                                                                                                                                                                                                                                       


Chain H from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee.......eeeeeeee.....eeeeeeee..eeee.......eeeeee........eeeeee...hhhhheeeeeeeee........ee..ee...ee...eeeee........eeeee.....eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh.....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx H    1 QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                                    10        20        30     |  39        49  ||    60        70       77C|     ||83        93      100C|||||||101       111       121      |137       147       157       167       177       187       197       207       
                                                             35A               52|                     77A|||   82A||               100A|||||100J||                         128|                                                                               
                                                                                54                      77B||    82B|                100B|||||100K|                          135                                                                               
                                                                                                         77C|     82C                 100C|||||100L                                                                                                            
                                                                                                          77D                          100D|||||                                                                                                               
                                                                                                                                        100E||||                                                                                                               
                                                                                                                                         100F|||                                                                                                               
                                                                                                                                          100G||                                                                                                               
                                                                                                                                           100H|                                                                                                               
                                                                                                                                            100I                                                                                                               


Chain J from PDB  Type:PROTEIN  Length:124
                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh.hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx J  520 LGFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   529       539       570       580       590       600       610       620       630       640       650       660    
                                                     547|                                                                                               
                                                      569                                                                                               


Chain K from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eee.....eee................eeee....eeee...hhhhhhhhhhhhhhhhhh......hhhhh........eeeeeeee......eeeeeeeehhhhh....hhhhhh..ee............eee....eeeeee.......eeee..eeee.............eee.........eeee.........eeeeeeeeeeeeeee......eee.......eee...eee.hhhhhhhhhhhhhhhhhhh.....eee......hhhhhheeeee..eeeee.hhhhhheee.....ee.eee....hhhhh....ee.......eeeeeeeeeeeeee....eeeee....hhhhhhhhhh.eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx K   33 NLWVTVYYGVPVWKDAETTLFCASDAATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNLKNCSFNMTTELRDKKQKVYSLFYRLDVVQILINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52     || 73        83        93       103       113       123       133|      163       173       183||     201       211       221       231       241       251       261       271       281       291       301       313      |331       341       351       361       371       381       391      |415       425       435       445       455   ||  470       480       490       500     
                                                    58|                                                            133|                           184|                                                                                                                 309|     320|                                                                  398|                                           459|                                        
                                                     70                                                             154                            193                                                                                                                  312      329                                                                   413                                            465                                        


Chain L from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx L    1 DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30|       39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                        30A                                                                                                                                                                                       


Chain X from PDB  Type:PROTEIN  Length:121
                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx X  521 GFLGAAGSTMGAASMTLTVQARNLLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   530       540    || 573       583       593       603       613       623       633       643       653       663 
                                                  545|                                                                                               
                                                   569                                                                                               


Chain Y from PDB  Type:PROTEIN  Length:397
                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eee.....eee.................eeee....eeee...hhhhhhhhhhhhhhhhhh......hhhhh........eeeeeeeee......eeeeeeeee.........hhhhh..ee............eee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee......eee.......eee..hhhhhhhhhhhhhhhhhhhh.....ee......hhhhhh..eee..eeeee.hhhh..ee.......ee...ee.........ee.......eeeeeeeeeeeeee...eee....hhhhhhhhhh.eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cjx Y   33 NLWVTVYYGVPVWKDAETTLFCASDAKATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNELKNCSFNMTTELRDKKQKVYSLFYRLDVVQININCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGTFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    42        52      ||72        82        92       102       112       122       132||     161       171       181   ||  199       209       219       229       239       249       259       269       279       289       299       309|      334       344       354       364       374       384       394||     420       430       440       450       468       478       488       498       
                                                     59|                                                            133|                             185|                                                                                                                309|     320|                                                          395|                                           458|                                      
                                                      70                                                             153                              194                                                                                                                 312      334                                                           412                                            467
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(-) SCOP Domains  (0, 0)

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(no "CATH Domain" information available for 5CJX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CJX)

(-) Gene Ontology  (14, 14)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q2N0S6_9HIV1 | Q2N0S6: 5v7j 5v8l 5v8m 5viy 5vj6 5w6d
UniProtKB/TrEMBL
        Q2N0S6_9HIV1 | Q2N0S6: 3j5m 4nco 4zmj 5aco 5c7k 5cez 5d9q 5fyl 5i8h 5js9 5jsa 5t3s 5t3x 5t3z 5thr 5u1f 5utf 5uty

(-) Related Entries Specified in the PDB File

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