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5C7K
Biol. Unit 1
Info
Asym.Unit (236 KB)
Biol.Unit 1 (653 KB)
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(1)
Title
:
CRYSTAL STRUCTURE BG505 SOSIP GP140 HIV-1 ENV TRIMER BOUND TO BROADLY NEUTRALIZING ANTIBODIES PGT128 AND 8ANC195
Authors
:
L. Kong, R. L. Stanfield, I. A. Wilson
Date
:
24 Jun 15 (Deposition) - 07 Oct 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (3x)
Keywords
:
Hiv-1, Sosip, Pgt128, 8Anc195, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Kong, A. Torrents De La Pena, M. C. Deller, F. Garces, K. Sliepen, Y. Hua, R. L. Stanfield, R. W. Sanders, I. A. Wilson
Complete Epitopes For Vaccine Design Derived From A Crystal Structure Of The Broadly Neutralizing Antibodies Pgt128 And 8Anc195 In Complex With An Hiv-1 Env Trimer.
Acta Crystallogr. , Sect. D V. 71 2099 2015
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Hetero Components
(4, 249)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
2a: ALPHA-D-MANNOSE (MANa)
2aa: ALPHA-D-MANNOSE (MANaa)
2ab: ALPHA-D-MANNOSE (MANab)
2ac: ALPHA-D-MANNOSE (MANac)
2ad: ALPHA-D-MANNOSE (MANad)
2ae: ALPHA-D-MANNOSE (MANae)
2af: ALPHA-D-MANNOSE (MANaf)
2ag: ALPHA-D-MANNOSE (MANag)
2ah: ALPHA-D-MANNOSE (MANah)
2ai: ALPHA-D-MANNOSE (MANai)
2aj: ALPHA-D-MANNOSE (MANaj)
2ak: ALPHA-D-MANNOSE (MANak)
2al: ALPHA-D-MANNOSE (MANal)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
2u: ALPHA-D-MANNOSE (MANu)
2v: ALPHA-D-MANNOSE (MANv)
2w: ALPHA-D-MANNOSE (MANw)
2x: ALPHA-D-MANNOSE (MANx)
2y: ALPHA-D-MANNOSE (MANy)
2z: ALPHA-D-MANNOSE (MANz)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
30
Ligand/Ion
BETA-D-MANNOSE
2
MAN
114
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
102
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG C:360 , ARG C:469
binding site for residue SO4 C 656
02
AC2
SOFTWARE
ASN C:88 , GLY D:527 , THR D:529 , THR D:627
binding site for Mono-Saccharide NAG C 601 bound to ASN C 88
03
AC3
SOFTWARE
ASN C:133 , ARG C:151 , ARG C:178
binding site for Mono-Saccharide NAG C 621 bound to ASN C 133
04
AC4
SOFTWARE
ARG A:100A , ASN C:156 , SER C:158 , TYR C:173 , ASP C:321A
binding site for Poly-Saccharide residues NAG C 602 through NAG C 603 bound to ASN C 156
05
AC5
SOFTWARE
THR C:128 , GLN C:130 , ASN C:160 , LYS C:169
binding site for Mono-Saccharide NAG C 604 bound to ASN C 160
06
AC6
SOFTWARE
VAL C:182 , ARG C:192 , ASN C:197
binding site for Poly-Saccharide residues NAG C 605 through NAG C 606 bound to ASN C 197
07
AC7
SOFTWARE
ASN C:234 , ILE C:277 , HIS C:352 , THR E:19 , TRP E:55 , SER E:57 , SER E:58 , ALA E:59 , PHE E:63 , ARG E:64 , ARG E:66 , VAL E:67 , LEU E:68 , SER E:70 , ALA E:71 , VAL E:72 , ASP E:73 , ILE E:77D , SER E:78 , SER E:79 , GLU E:81 , PRO F:8 , SER F:9 , THR F:10 , GLN F:100 , LYS F:107 , PRO F:141 , GLU F:143 , LYS F:145 , GLN F:199
binding site for Poly-Saccharide residues GLY E 65 through MAN E 311 bound to ASN C 234
08
AC8
SOFTWARE
GLU C:211 , PRO C:212 , ASN C:262 , ASN C:377 , GLY C:379 , GLN C:440 , GLY C:441 , VAL C:442 , VAL C:446 , SER C:447 , NAG C:610 , NAG C:632
binding site for Poly-Saccharide residues NAG C 641 through MAN C 647 bound to ASN C 262
09
AC9
SOFTWARE
ASN C:276 , THR C:278 , ASN C:279 , GLN E:1 , HIS E:3 , VAL E:5 , GLN E:6 , TYR E:25 , GLY E:26
binding site for Poly-Saccharide residues NAG C 612 through MAN C 620 bound to ASN C 276
10
AD1
SOFTWARE
ASN C:295 , ASN C:332 , VAL C:333 , SER C:334
binding site for Poly-Saccharide residues NAG C 648 through MAN C 652 bound to ASN C 295
11
AD2
SOFTWARE
SER A:28 , ALA A:30 , HIS A:52A , ALA A:52C , SER A:52D , THR A:73 , ASN C:301 , ARG C:304 , MAN C:646
binding site for Poly-Saccharide residues NAG C 632 through MAN C 640 bound to ASN C 301
12
AD3
SOFTWARE
TYR A:52E , TRP A:52F , TRP A:56 , THR A:57 , TYR A:58 , HIS A:59 , LYS A:64 , GLY B:93 , ASN B:94 , TRP B:95 , ASP B:95A , THR C:297 , HIS C:330 , ASN C:332 , SER C:413
binding site for Poly-Saccharide residues NAG C 622 through MAN C 631 bound to ASN C 332
13
AD4
SOFTWARE
LYS C:335 , ASN C:339
binding site for Poly-Saccharide residues NAG C 660 through BMA C 662 bound to ASN C 339
14
AD5
SOFTWARE
ASN C:355 , THR F:197 , HIS F:198 , GLN F:199 , SER F:202 , SER F:203 , PRO F:204
binding site for Mono-Saccharide NAG C 607 bound to ASN C 355
15
AD6
SOFTWARE
ASN C:363 , ASN C:386 , SER C:388 , NAG C:608 , NAG C:609
binding site for Poly-Saccharide residues NAG C 653 through BMA C 655 bound to ASN C 363
16
AD7
SOFTWARE
ASN C:386 , SER C:388 , NAG C:653 , NAG C:654 , NAG C:657
binding site for Poly-Saccharide residues NAG C 608 through NAG C 609 bound to ASN C 386
17
AD8
SOFTWARE
ASN C:392 , NAG C:609
binding site for Poly-Saccharide residues NAG C 657 through BMA C 659 bound to ASN C 392
18
AD9
SOFTWARE
ASN C:262 , PRO C:291 , ASN C:448 , NAG C:641
binding site for Poly-Saccharide residues NAG C 610 through NAG C 611 bound to ASN C 448
19
AE1
SOFTWARE
ASN D:611 , SER D:613
binding site for Mono-Saccharide NAG D 709 bound to ASN D 611
20
AE2
SOFTWARE
ASN D:616 , ARG D:617 , ASN D:618
binding site for Mono-Saccharide NAG D 710 bound to ASN D 618
21
AE3
SOFTWARE
ASN D:637 , TYR F:49 , ARG F:50 , ALA F:52 , ALA F:53 , LEU F:54 , GLY F:56
binding site for Poly-Saccharide residues NAG D 701 through MAN D 708 bound to ASN D 637
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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