Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY CH04, ISOLATED FROM DONOR CH0219, IN COMPLEX WITH SCAFFOLDED TRIMERIC HIV-1 ENV V1V2 DOMAIN FROM THE CLADE AE STRAIN A244
 
Authors :  J. Gorman, M. Yang, P. D. Kwong
Date :  17 Nov 15  (Deposition) - 16 Dec 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.19
Chains :  Asym. Unit :  A,B,C,G,H,L
Biol. Unit 1:  G,H,L  (1x)
Biol. Unit 2:  G,H,L  (3x)
Biol. Unit 3:  A,B,C  (1x)
Biol. Unit 4:  A,B,C  (3x)
Keywords :  Hiv-1, Env, V1V2, Ch0219, Chavi, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Gorman, M. Yang, P. D. Kwong
Crystal Structure Of Broadly Neutralizing Antibody Ch04, Isolated From Donor Ch0219, In Complex With Scaffolded Trimeric Hiv-1 Env V1V2 Domain From The Clade Ae Strain A24
Nat. Struct. Mol. Biol. 2015
PubMed: search  |  Reference-DOI: 10.1038/NSMB.3144

(-) Compounds

Molecule 1 - CH04 HEAVY CHAIN
    Chains: H, A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: EXPI293
    Expression System Taxid: 9606
    Gene: IGHG1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - CH04 LIGHT CHAIN
    Chains: L, B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: EXPI293
    Expression System Taxid: 9606
    Gene: IGKC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, ENVELOPE GLYCOPROTEIN GP160
    Chains: C, G
    EC Number: 4.6.1.12, 4.6.1.12
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: EXPI293
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 125-205
    Gene: ISPF, HI_0671, ENV
    Organism Scientific: HAEMOPHILUS INFLUENZAE, HUMAN IMMUNODEFICIENCY VIRUS 1, HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM 11121 / KW20 / RD)
    Organism Taxid: 71421, 11676
    Strain: ATCC 51907 / DSM 11121 / KW20 / RD
    Synonym: MECPS,ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 13-1 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 18 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 19 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 21 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 25 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 6 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 7 ENV POLYPROTEIN, ENDOGENOUS RETROVIRUS GROUP K MEMBER 8 ENV POLYPROTEIN,ENVELOPE GLYCOPROTEIN GP160,MECPS

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCGHL
Biological Unit 1 (1x):    GHL
Biological Unit 2 (3x):    GHL
Biological Unit 3 (1x): ABC   
Biological Unit 4 (3x): ABC   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 26)

Asymmetric Unit (3, 26)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2MAN10Ligand/IonALPHA-D-MANNOSE
3NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 14)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN6Ligand/IonALPHA-D-MANNOSE
3NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 42)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2MAN18Ligand/IonALPHA-D-MANNOSE
3NAG18Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (3, 12)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN4Ligand/IonALPHA-D-MANNOSE
3NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (3, 36)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2MAN12Ligand/IonALPHA-D-MANNOSE
3NAG18Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN C:156 , HIS C:173binding site for Poly-Saccharide residues NAG C 401 through NAG C 402 bound to ASN C 156
2AC2SOFTWAREARG A:58 , MAN A:304 , ARG B:93 , THR C:128 , HIS C:130 , ASN C:160 , LYS C:169binding site for Poly-Saccharide residues NAG C 403 through MAN C 408 bound to ASN C 160
3AC3SOFTWAREASN G:156 , SER G:158 , HIS G:173 , GLU H:30binding site for Poly-Saccharide residues NAG G 401 through NAG G 402 bound to ASN G 156
4AC4SOFTWAREHIS G:130 , ASN G:160 , ASP H:56 , ARG H:58 , THR H:99 , ASP H:100B , TYR H:100G , SER H:100Jbinding site for Poly-Saccharide residues NAG G 403 through MAN G 409 bound to ASN G 160
5AC5SOFTWAREARG A:58 , ASP A:100A , ASP A:100B , GLN A:100C , GLY A:100D , TRP A:100N , TYR B:32 , GLY B:92 , TYR B:96 , MAN C:407binding site for Poly-Saccharide residues NAG A 301 through MAN A 304
6AC6SOFTWAREARG A:58 , ASP A:100A , ASP A:100B , GLN A:100C , GLY A:100D , TRP A:100N , TYR B:32 , GLY B:92 , TYR B:96 , MAN C:407 , TRP H:100N , HIS L:29 , TYR L:32 , TYR L:91 , GLY L:92 , TYR L:96binding site for Poly-Saccharide residues NAG L 301 through MAN L 305

(-) SS Bonds  (10, 10)

Asymmetric Unit
No.Residues
1A:22 -A:92
2A:140 -A:196
3B:23 -B:88
4B:134 -B:194
5C:131 -C:157
6G:131 -G:157
7H:22 -H:92
8H:140 -H:196
9L:23 -L:88
10L:134 -L:194

(-) Cis Peptide Bonds  (11, 11)

Asymmetric Unit
No.Residues
1Phe H:146 -Pro H:147
2Glu H:148 -Pro H:149
3Ser L:7 -Pro L:8
4Ser L:94 -Pro L:95
5Tyr L:140 -Pro L:141
6Pro C:227 -Lys C:228
7Phe A:146 -Pro A:147
8Glu A:148 -Pro A:149
9Ser B:7 -Pro B:8
10Ser B:94 -Pro B:95
11Tyr B:140 -Pro B:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ESZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ESZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5ESZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeee...eee.....eee.........ee...eeeee........eee.....eeeee.....eeee.hhh..........ee.....eeee.......hhhhhh...eeeehhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esz A    1 EVQLVESGGGLIRPGGSLRLSCKGSGFIFENFGFGWVRQGPGKGLEWVSGTNWNGGDSRYGDSVKGRFTISRDNSNNFVYLQMNSLRPEDTAIYYCARGTDYTIDDQGIRYQGSGTFWYFDVWGRGTLVTVSSASTKGPSVFPLAPCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNT  205
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||||||100P       110       120     ||143       153       163       173       183       193       203  
                                                                              52A                            82A||               100A|||||100J||||||                       126|                                                                 
                                                                                                              82B|                100B|||||100K|||||                        140                                                                 
                                                                                                               82C                 100C|||||100L||||                                                                                            
                                                                                                                                    100D|||||100M|||                                                                                            
                                                                                                                                     100E|||| 100N||                                                                                            
                                                                                                                                      100F|||  100O|                                                                                            
                                                                                                                                       100G||   100P                                                                                            
                                                                                                                                        100H|                                                                                                   
                                                                                                                                         100I                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeee.........eee.....eeeeee......eeeehhhhh........eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esz B    1 EIVLTQSPDTLSLSPGERATLSCRASSSRYFAWYQHKPGQPPRLLIYGGSTRATGIPNRFSAGGSGTQFTLTVNRLEAEDFAVYYCQQYGRSPYTFGQGTKVEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20      ||32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
                                                    27A|                                                                                                                                                                                       
                                                      30                                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...ee.....ee.................hhh.eee...eeee.......hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh..eeeeeeeeeee.....hhhhhhhhhhhhhhhh..hhh.eeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esz C  111 SLIRIGHGFDVHCVTLHCTNNCSFNMTTELRDKKQKVHALFYKLDIVPINSKYRLIGGSGGDVALHALTDAILGAAALGDIGKLFPKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATGIACEAVALLIRQ  316
                                   120 ||    133|      165       175       188     ||201       211       221       231       241       251       261       271       281       291|      313   
                                     122|    133|                         184|   194|                                                                                          291|            
                                      126     156                          188    198                                                                                           304            


Chain G from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....ee........eee........eeeee...hhh.eee....eeee...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeeeeeee.hhhhhhhhhhhhh.hhhhh..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esz G  111 SLIRIGHGFDVHCVTLHCTNEVRNCSFNMTTELRDKKQKVHALFYKLDIVPIENSKYRLIGGDVALHALTDAILGAAALGKNADSRGLLREAFRQVQEKGYKIGNVDITHIDAMRAKIAEDLQCDIEQVNIACEAVALLIRQ  316
                                   120 ||    133|      162       172       182  ||   194|      210       220|      237       247       267       277       287|      314  
                                     122|    133|                             185|   194|                220|                         256|                 287|           
                                      126     153                              188    201                 228                          267                  305           


Chain H from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeee...eee.....eee.........ee...eeeee........eeeee.......eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeee..hhhhhh.eeeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esz H    1 EVQLVESGGGLIRPGGSLRLSCKGSGFIFENFGFGWVRQGPGKGLEWVSGTNWNGGDSRYGDSVKGRFTISRDNSNNFVYLQMNSLRPEDTAIYYCARGTDYTIDDQGIRYQGSGTFWYFDVWGRGTLVTVSSASTKGPSVFPLAPTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  213
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||||||100P       110       120     ||134       144       154       164       174       184       194       204         
                                                                              52A                            82A||               100A|||||100J||||||                       126|                                                                                  
                                                                                                              82B|                100B|||||100K|||||                        131                                                                                  
                                                                                                               82C                 100C|||||100L||||                                                                                                             
                                                                                                                                    100D|||||100M|||                                                                                                             
                                                                                                                                     100E|||| 100N||                                                                                                             
                                                                                                                                      100F|||  100O|                                                                                                             
                                                                                                                                       100G||   100P                                                                                                             
                                                                                                                                        100H|                                                                                                                    
                                                                                                                                         100I                                                                                                                    


Chain L from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....ee.eeeeeeee....eeeeee......eeeee...ee.......eeeeeeeeeeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhhhheeeeeeeeeee....eeeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeeee......eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5esz L    1 EIVLTQSPDTLSLSPGERATLSCRASQSVHSRYFAWYQHKPGQPPRLLIYGGSTRATGIPNRFSAGGSGTQFTLTVNRLEAEDFAVYYCQQYGRSPYTFGQGTKVEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20       |29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
                                                     27A
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ESZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ESZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ESZ)

(-) Gene Ontology  (45, 45)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:148 - Pro A:149   [ RasMol ]  
    Glu H:148 - Pro H:149   [ RasMol ]  
    Phe A:146 - Pro A:147   [ RasMol ]  
    Phe H:146 - Pro H:147   [ RasMol ]  
    Pro C:227 - Lys C:228   [ RasMol ]  
    Ser B:7 - Pro B:8   [ RasMol ]  
    Ser B:94 - Pro B:95   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
    Ser L:94 - Pro L:95   [ RasMol ]  
    Tyr B:140 - Pro B:141   [ RasMol ]  
    Tyr L:140 - Pro L:141   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5esz
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  IGKC_HUMAN | P01834
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  ISPF_HAEIN | P44815
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q4QX31_9HIV1 | Q4QX31
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  4.6.1.12
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  IGKC_HUMAN | P01834
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  ISPF_HAEIN | P44815
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q4QX31_9HIV1 | Q4QX31
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IGKC_HUMAN | P01834: 1a4j 1a4k 1cly 1d5b 1d5i 1d6v 1dfb 1gaf 1hez 1hkl 1hzh 1i7z 1mim 1n0x 1om3 1op3 1op5 1ucb 2ny7 2o5x 2o5y 2o5z 2qqk 2qql 2qqn 2qsc 2r56 2rfx 2vxq 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3cfj 3cfk 3csy 3d0l 3d85 3dvg 3dvn 3eyf 3eyo 3eyq 3iu3 3o11 3qct 3qcu 3qcv 3ru8 3u0w 3u7w 3u7y 3vh8 3wuw 3x11 3x12 4d3c 4d9r 4hix 4nm4 4nm8 4xmp 4xny 4xnz 4xxd 4ydv 5b38 5b39 5c7k 5esv 5ewi 5veb 5viy
        ISPF_HAEIN | P44815: 1jn1 1vh8 1vha 5esv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5ESZ)