Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  THE STRUCTURE OF CA2+ SENSOR (CASE-12)
 
Authors :  L. Leder, W. Stark, F. Freuler, M. Marsh, M. Meyerhofer, T. Stettler, L. O. V. Britanova, L. A. Strukova, D. M. Chudakov
Date :  30 Jul 10  (Deposition) - 29 Sep 10  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Circular Permutated Green Fluorescent Protein, Genetically Encoded, Gfp Calmodulin M13-Peptide, Calcium Sensor, M13-Peptide, Gyg Naturally Modified Tripeptide Acts As Chromophore, Fluorescent Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Leder, W. Stark, F. Freuler, M. Marsh, M. Meyerhofer, T. Stettler, L. M. Mayr, O. V. Britanova, L. A. Strukova, D. M. Chudakov, E. A. Souslova
The Structure Of Ca2+ Sensor Case16 Reveals The Mechanism O Reaction To Low Ca2+ Concentrations
Sensors (Basel) V. 10 8143 2010
PubMed-ID: 22163646  |  Reference-DOI: 10.3390/S100908143

(-) Compounds

Molecule 1 - MYOSIN LIGHT CHAIN KINASE, SMOOTH MUSCLE,GREEN FLUORESCENT PROTEIN,GREEN FLUORESCENT PROTEIN,CALMODULIN-1
    Chains: A, B
    EC Number: 2.7.11.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET41
    Expression System Strain: BL21(DE3) TUNER
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MYLK, GFP, CALM1, CALM, CAM, CAM1
    Mutation: YES
    Organism Common: CHICKEN, JELLYFISH, HUMAN
    Organism Scientific: GALLUS GALLUS, AEQUOREA VICTORIA, HOMO SAPIENS
    Organism Taxid: 9031, 6100, 9606
    Other Details: CHIMERA PROTEIN OF PEPTIDE OF M13 (RESIDUES 1730-1749, UNP P11799), C-TERMINAL DOMAIN OF GREEN FLUORESCENT PROTEIN (RESIDUES 147-238, UNP P42212), LINKER, N-TERMINAL OF GREEN FLUORESCENT PROTEIN (RESIDUES 2-146, UNP P42212) AND RESIDUES 3-149 OF CALMODULIN (UNP P0DP23)
    Synonym: MLCK,TELOKIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2CR22Mod. Amino Acid{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CR21Mod. Amino Acid{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CR21Mod. Amino Acid{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CR22Mod. Amino Acid{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:289 , ASP A:291 , ASP A:293 , THR A:295 , GLU A:300BINDING SITE FOR RESIDUE CA A 501
2AC2SOFTWAREASP A:325 , ASP A:327 , ASN A:329 , THR A:331 , GLU A:336BINDING SITE FOR RESIDUE CA A 502
3AC3SOFTWAREASP A:362 , ASP A:364 , ASN A:366 , TYR A:368 , GLU A:373BINDING SITE FOR RESIDUE CA A 503
4AC4SOFTWAREASP A:398 , ASP A:400 , ASP A:402 , GLN A:404 , GLU A:409 , HOH A:448BINDING SITE FOR RESIDUE CA A 504
5AC5SOFTWAREASP B:289 , ASP B:291 , ASP B:293 , THR B:295 , GLU B:300BINDING SITE FOR RESIDUE CA B 501
6AC6SOFTWAREASP B:325 , ASP B:327 , ASN B:329 , THR B:331 , GLU B:336BINDING SITE FOR RESIDUE CA B 502
7AC7SOFTWAREASP B:362 , ASP B:364 , ASN B:366 , TYR B:368 , GLU B:373BINDING SITE FOR RESIDUE CA B 503
8AC8SOFTWAREASP B:398 , ASP B:400 , ASP B:402 , GLN B:404 , GLU B:409BINDING SITE FOR RESIDUE CA B 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O78)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O78)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 20)

Asymmetric Unit (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_GFP_AEQVI_001 *F100YGFP_AEQVI  ---  ---A/BF224Y
02UniProtVAR_GFP_AEQVI_002 *T108SGFP_AEQVI  ---  ---A/BT232S
03UniProtVAR_GFP_AEQVI_003 *L141MGFP_AEQVI  ---  ---A/BL265M
04UniProtVAR_069222N54ICALM1_HUMANDisease (CPVT4)267607276A/BN322I
05UniProtVAR_073275F90LCALM1_HUMANDisease (LQT14)730882253A/BF358L
06UniProtVAR_GFP_AEQVI_004 *V219IGFP_AEQVI  ---  ---A/BR359I
07UniProtVAR_078541N98SCALM1_HUMANDisease (CPVT4)398124647A/BN366S
08UniProtVAR_078542D130GCALM1_HUMANDisease (LQT14)730882252A/BD398G
09UniProtVAR_078263E141GCALM1_HUMANDisease (LQT14)  ---A/BE409G
10UniProtVAR_073282F142LCALM1_HUMANDisease (LQT14)11551462A/BF410L
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_GFP_AEQVI_001 *F100YGFP_AEQVI  ---  ---AF224Y
02UniProtVAR_GFP_AEQVI_002 *T108SGFP_AEQVI  ---  ---AT232S
03UniProtVAR_GFP_AEQVI_003 *L141MGFP_AEQVI  ---  ---AL265M
04UniProtVAR_069222N54ICALM1_HUMANDisease (CPVT4)267607276AN322I
05UniProtVAR_073275F90LCALM1_HUMANDisease (LQT14)730882253AF358L
06UniProtVAR_GFP_AEQVI_004 *V219IGFP_AEQVI  ---  ---AR359I
07UniProtVAR_078541N98SCALM1_HUMANDisease (CPVT4)398124647AN366S
08UniProtVAR_078542D130GCALM1_HUMANDisease (LQT14)730882252AD398G
09UniProtVAR_078263E141GCALM1_HUMANDisease (LQT14)  ---AE409G
10UniProtVAR_073282F142LCALM1_HUMANDisease (LQT14)11551462AF410L
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_GFP_AEQVI_001 *F100YGFP_AEQVI  ---  ---BF224Y
02UniProtVAR_GFP_AEQVI_002 *T108SGFP_AEQVI  ---  ---BT232S
03UniProtVAR_GFP_AEQVI_003 *L141MGFP_AEQVI  ---  ---BL265M
04UniProtVAR_069222N54ICALM1_HUMANDisease (CPVT4)267607276BN322I
05UniProtVAR_073275F90LCALM1_HUMANDisease (LQT14)730882253BF358L
06UniProtVAR_GFP_AEQVI_004 *V219IGFP_AEQVI  ---  ---BR359I
07UniProtVAR_078541N98SCALM1_HUMANDisease (CPVT4)398124647BN366S
08UniProtVAR_078542D130GCALM1_HUMANDisease (LQT14)730882252BD398G
09UniProtVAR_078263E141GCALM1_HUMANDisease (LQT14)  ---BE409G
10UniProtVAR_073282F142LCALM1_HUMANDisease (LQT14)11551462BF410L
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_GFP_AEQVI_001 *F100YGFP_AEQVI  ---  ---A/BF224Y
02UniProtVAR_GFP_AEQVI_002 *T108SGFP_AEQVI  ---  ---A/BT232S
03UniProtVAR_GFP_AEQVI_003 *L141MGFP_AEQVI  ---  ---A/BL265M
04UniProtVAR_069222N54ICALM1_HUMANDisease (CPVT4)267607276A/BN322I
05UniProtVAR_073275F90LCALM1_HUMANDisease (LQT14)730882253A/BF358L
06UniProtVAR_GFP_AEQVI_004 *V219IGFP_AEQVI  ---  ---A/BR359I
07UniProtVAR_078541N98SCALM1_HUMANDisease (CPVT4)398124647A/BN366S
08UniProtVAR_078542D130GCALM1_HUMANDisease (LQT14)730882252A/BD398G
09UniProtVAR_078263E141GCALM1_HUMANDisease (LQT14)  ---A/BE409G
10UniProtVAR_073282F142LCALM1_HUMANDisease (LQT14)11551462A/BF410L
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM1_HUMAN8-43
 
44-79
 
81-116
 
117-149
 		  8A:276-311
B:276-311
A:312-347
B:312-347
A:349-384
B:349-384
A:385-417
B:385-417
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM1_HUMAN21-33
 
57-69
 
94-106
 
130-142
 		  8A:289-301
B:289-301
A:325-337
B:325-337
A:362-374
B:362-374
A:398-410
B:398-410
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM1_HUMAN8-43
 
44-79
 
81-116
 
117-149
 		  4A:276-311
-
A:312-347
-
A:349-384
-
A:385-417
-
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM1_HUMAN21-33
 
57-69
 
94-106
 
130-142
 		  4A:289-301
-
A:325-337
-
A:362-374
-
A:398-410
-
Biological Unit 2 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM1_HUMAN8-43
 
44-79
 
81-116
 
117-149
 		  4-
B:276-311
-
B:312-347
-
B:349-384
-
B:385-417
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM1_HUMAN21-33
 
57-69
 
94-106
 
130-142
 		  4-
B:289-301
-
B:325-337
-
B:362-374
-
B:398-410
Biological Unit 3 (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM1_HUMAN8-43
 
44-79
 
81-116
 
117-149
 		  8A:276-311
B:276-311
A:312-347
B:312-347
A:349-384
B:349-384
A:385-417
B:385-417
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM1_HUMAN21-33
 
57-69
 
94-106
 
130-142
 		  8A:289-301
B:289-301
A:325-337
B:325-337
A:362-374
B:362-374
A:398-410
B:398-410

(-) Exons   (0, 0)

(no "Exon" information available for 3O78)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:403
 aligned with CALM1_HUMAN | P0DP23 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:403
                                                                                                                                                                                                                                                                                          1                                                                                                                                                    
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -    |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146   
         CALM1_HUMAN      - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  149
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh....eeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.........hhhhhh...eeeeeeeeeee..eeeeeeeeeeeehhh.eeeeeeee.......hhhhhh....hhhhh..hhhhh..hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee.....................hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhhh..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-------S--------------------------------M--------------------------------------------------------I-----------------------------------LI------S-------------------------------G----------GL------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EF_HAND_2  PDB: A:276-311           EF_HAND_2  PDB: A:312-347           -EF_HAND_2  PDB: A:349-384           EF_HAND_2  PDB: A:385-417         PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3o78 A    1 GPGSSRRKWNKTGHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSFQSVLSKDPNEKRDHMVLLEFVTAAGITLGGTGSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLsLKCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIGFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  417
                                    10        20        30        40        50        60        70        80        90       100       122       132       142       152       162       172       182     ||194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414   
                                                                                                                                      109|                                                               188||                                                                                                                                                                                                                                 
                                                                                                                                       122                                                                190-CR2                                                                                                                                                                                                                              
                                                                                                                                                                                                           192                                                                                                                                                                                                                                 


Chain A from PDB  Type:PROTEIN  Length:403
 aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot  Length:238

    Alignment length:405
                                                                                                                                                                                                                                                                                                                                                                               214                                                               
                                                                                                                                            1                                                                                                                                                 149        150                   172   173                                     213 |     222   223            238                                  
                                     -         -         -         -         -         -         -         -         -         -         -  |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148|        - |     158       168   |   173       183       193       203       213 |     222     | 227       237|        -         -         -     
           GFP_AEQVI      - ----------------------------------------------------------------------------------------------------------------MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHN----------VYIMADKQKNGIKVNFKIRHNIE-----DGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNE-KRDHMVLLE-----FVTAAGITHGMDELYK----------------------------------    -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh....eeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.........hhhhhh...eeeeeeeeeee..eeeeeeeeeeeehhh.eeeeeeee.......hhhhhh...-.-hhhhh..hhhhh..hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee.....................hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhhh..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-------S--------------------------------M--------------------------------------------------------I-----------------------------------LI------S-------------------------------G----------GL------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3o78 A    1 GPGSSRRKWNKTGHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSFQSVLSKDPNEKRDHMVLLEFVTAAGITLGGTGSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTL-s-LKCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIGFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  417
                                    10        20        30        40        50        60        70        80        90       100       122       132       142       152       162       172       182     | 192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412     
                                                                                                                                      109|                                                               188 | |                                                                                                                                                                                                                                 
                                                                                                                                       122                                                                 190-CR2                                                                                                                                                                                                                               
                                                                                                                                                                                                             192                                                                                                                                                                                                                                 


Chain A from PDB  Type:PROTEIN  Length:403
 aligned with MYLK_CHICK | P11799 from UniProtKB/Swiss-Prot  Length:1906

    Alignment length:820
                                   190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000
          MYLK_CHICK    181 GRPQPQVTWTKGDIHLQQNERFNMFEKTGIQYLEIQNVQLADAGIYTCTVVNSAGKASVSAELTVQGPDKTDTHAQPLCMPPKPTTLATKAIENSDFKQATSNGIAKELKSTSTELMVETKDRLSAKKETFYTSREAKDGKQGQNQEANAVPLQESRGTKGPQVLQKTSSTITLQAVKAQPEPKAEPQTTFIRQAEDRKRTVQPLMTTTTQENPSLTGQVSPRSRETENRAGVRKSVKEEKREPLGIPPQFESRPQSLEASEGQEIKFKSKVSGKPKPDVEWFKEGVPIKTGEGIQIYEEDGTHCLWLKKACLGDSGSYSCAAFNPRGQTSTSWLLTVKRPKVEEVAPCFSSVLKGCTVSEGQDFVLQCYVGGVPVPEITWLLNEQPIQYAHSTFEAGVAKLTVQDALPEDDGIYTCLAENNAGRASCSAQVTVKEKKSSKKAEGTQAAKLNKTFAPIFLKGLTDLKVMDGSQVIMTVEVSANPCPEIIWLHNGKEIQETEDFHFEKKGNEYSLYIQEVFPEDTGKYTCEAWNELGETQTQATLTVQEPQDGIQPWFISKPRSVTAAAGQNVLISCAIAGDPFPTVHWFKDGQEITPGTGCEILQNEDIFTLILRNVQSRHAGQYEIQLRNQVGECSCQVSLMLRESSASRAEMLRDGRESASSGERRDGGNYGALTFGRTSGFKKSSSETRAAEEEQEDVRGVLKRRVETREHTEESLRQQEAEQLDFRDILGKKVSTKSFSEEDLKEIPAEQMDFRANLQRQVKPKTLSEEERKVHAPQQVDFRSVLAKKGTPKTPLPEKVPPPKPAVTDFRSVLGAK 1000
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh....--------------------eeeeeehhhheeeeeeeee------------------ee.....eeeeeeeeeee-------------------------------------------------e...-----..-......eeeeeeeeee.-..-------------.....eeeeeeeeeee....---------------.....hhhh---------hh...eeeeeeeeeee..eeeeeeee----------------eeeehhh.e-----eeeeeee...--------------------------....hhhhhh...-.----------hhhhh.-------------------------------.hhhhh..hhhhhh....-----------eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee.----------------------------------......--------..............hhhhhhhhhhhhhhhh-.....eehhhhhhhhhhhhh..------------.hhhhhhhhhhh........eehhhhhhhhhh..hhhhh-----------------------------hhhhhhhhhhhh----......--.hhhhhhhhhhhh....hhhhhhhhhh-----------------------------------------------------------------------hhh.......hh-------------------------hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-------S--------------------------------------------------------------------------M---------------------------------------------------------------------I----------------------------------------------------------------LI----------S--------------------------------------------------------------------------------------------------------G-----------------------------------GL------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3o78 A    1 GPGSSRRKWNKTGHAVRAIGRLSSLEN--------------------VYIMADKQKNGIKANFKIR------------------HNVEDGSVQLADHYQQNT-------------------------------------------------PIGD-----GP-VLLPDNHYLSFQSVLSK-DP-------------NEKRDHMVLLEFVTAAGITL---------------GGTGSKGEE---------LFTGVVPILVELDGDVNGHKFSVSGE----------------GEGDATYGK-----LTLKLICTTG--------------------------KLPVPWPTLVTTL-s----------LKCFAR-------------------------------YPDHMKQHDFFKSAMPEG-----------YVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIG----------------------------------FKEDGN--------ILGHKLEYNTRDQLTEEQIAEFKEAFSLFD-KDGDGTITTKELGTVMRSLGQN------------PTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS-----------------------------EEEIREAFRVFD----KDGNGY--ISAAELRHVMTNLGEKLTDEEVDEMIR-----------------------------------------------------------------------EADIDGDGQVNY-------------------------EEFVQMMTAK  417
                                    10        20      |  -         -       |30        40     |   -         -    |   52        62 |       -         -         -         -         - |  |    -|| |    77        87 ||      -      | 93       103     |   -         - |     130       131       141       151    |    -         - |     165     | 170    |    -         -         - |     184   | |   -      |195 |       -         -         -   |   204       214|        -  |    223       233       243       253         -         -         -    |  259       261       271       281       290       300       310|        -   |   318       328       338       348 |       -         -         - |     359  |    365  |  | 373       383       393 |       -         -         -         -         -         -         -   |   402    |    -         -         -|      417
                                                     27                   28                46                 47               64                                                65 68    69| |              87 ||            90                109             122     130       131                      156              157     165   166      175                        176         188 |        192  197                             198              215         216                                  253                                254  259      260                          289 |                  311          312                                   350                           351        362  363  368  |                       395                                                                     396        407                       408         
                                                                                                                                                                                            70 |                88|                                                                                                                                                                          190-CR2                                                                                                                                                                                           290                                                                                                                           369                                                                                                                                                
                                                                                                                                                                                              71                 89                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:401
 aligned with CALM1_HUMAN | P0DP23 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:401
                                                                                                                                                                                                                                                                                        1                                                                                                                                                    
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -  |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148 
         CALM1_HUMAN      - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  149
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------GFP-3o78B01 B:129-374                                                                                                                                                                                                                               ------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------GFP-3o78B02 B:129-374                                                                                                                                                                                                                               ------------------------------------------- Pfam domains (2)
         Sec.struct. author ......hhhhhhhhhhhhhhhhh....eeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.......hhhhhhh..eeeeeeeeeee..eeeeeeeeeeeehhh.eeeeeee........hhhhhh....hhhhh..hhhhh..hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee.....................hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhhh..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-------S--------------------------------M--------------------------------------------------------I-----------------------------------LI------S-------------------------------G----------GL------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EF_HAND_2  PDB: B:276-311           EF_HAND_2  PDB: B:312-347           -EF_HAND_2  PDB: B:349-384           EF_HAND_2  PDB: B:385-417         PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3o78 B    1 GPGSSRRKWNKTGHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSFQSVLSKDPNEKRDHMVLLEFVTAAGITLGMSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLsLKCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIGFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  417
                                    10        20        30        40        50        60        70        80        90       100       110||     134       144       154       164       174       184   ||| 196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416 
                                                                                                                                        111|                                                           188||                                                                                                                                                                                                                                 
                                                                                                                                         126                                                            190-CR2                                                                                                                                                                                                                              
                                                                                                                                                                                                         192                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:401
 aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot  Length:238

    Alignment length:403
                                                                                                                                                                                                                                                                                                                                                                             214                                                               
                                                                                                                                          1                                                                                                                                                 149        150                   172   173                                     213 |     222   223            238                                  
                                     -         -         -         -         -         -         -         -         -         -         -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140        |-       150       160       170 |     175       185       195       205       214       | -   |   229        |-         -         -         -   
           GFP_AEQVI      - --------------------------------------------------------------------------------------------------------------MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHN----------VYIMADKQKNGIKVNFKIRHNIE-----DGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNE-KRDHMVLLE-----FVTAAGITHGMDELYK----------------------------------    -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------GFP-3o78B01 B:129-374                                                                                                                                                                                                                                 ------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------GFP-3o78B02 B:129-374                                                                                                                                                                                                                                 ------------------------------------------- Pfam domains (2)
         Sec.struct. author ......hhhhhhhhhhhhhhhhh....eeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.......hhhhhhh..eeeeeeeeeee..eeeeeeeeeeeehhh.eeeeeee........hhhhhh...-.-hhhhh..hhhhh..hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee.....................hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhhh..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-------S--------------------------------M--------------------------------------------------------I-----------------------------------LI------S-------------------------------G----------GL------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3o78 B    1 GPGSSRRKWNKTGHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSFQSVLSKDPNEKRDHMVLLEFVTAAGITLGMSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTL-s-LKCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIGFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  417
                                    10        20        30        40        50        60        70        80        90       100       110||     134       144       154       164       174       184   | | 194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414   
                                                                                                                                        111|                                                           188 | |                                                                                                                                                                                                                                 
                                                                                                                                         126                                                             190-CR2                                                                                                                                                                                                                               
                                                                                                                                                                                                           192                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:401
 aligned with MYLK_CHICK | P11799 from UniProtKB/Swiss-Prot  Length:1906

    Alignment length:820
                                   190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000
          MYLK_CHICK    181 GRPQPQVTWTKGDIHLQQNERFNMFEKTGIQYLEIQNVQLADAGIYTCTVVNSAGKASVSAELTVQGPDKTDTHAQPLCMPPKPTTLATKAIENSDFKQATSNGIAKELKSTSTELMVETKDRLSAKKETFYTSREAKDGKQGQNQEANAVPLQESRGTKGPQVLQKTSSTITLQAVKAQPEPKAEPQTTFIRQAEDRKRTVQPLMTTTTQENPSLTGQVSPRSRETENRAGVRKSVKEEKREPLGIPPQFESRPQSLEASEGQEIKFKSKVSGKPKPDVEWFKEGVPIKTGEGIQIYEEDGTHCLWLKKACLGDSGSYSCAAFNPRGQTSTSWLLTVKRPKVEEVAPCFSSVLKGCTVSEGQDFVLQCYVGGVPVPEITWLLNEQPIQYAHSTFEAGVAKLTVQDALPEDDGIYTCLAENNAGRASCSAQVTVKEKKSSKKAEGTQAAKLNKTFAPIFLKGLTDLKVMDGSQVIMTVEVSANPCPEIIWLHNGKEIQETEDFHFEKKGNEYSLYIQEVFPEDTGKYTCEAWNELGETQTQATLTVQEPQDGIQPWFISKPRSVTAAAGQNVLISCAIAGDPFPTVHWFKDGQEITPGTGCEILQNEDIFTLILRNVQSRHAGQYEIQLRNQVGECSCQVSLMLRESSASRAEMLRDGRESASSGERRDGGNYGALTFGRTSGFKKSSSETRAAEEEQEDVRGVLKRRVETREHTEESLRQQEAEQLDFRDILGKKVSTKSFSEEDLKEIPAEQMDFRANLQRQVKPKTLSEEERKVHAPQQVDFRSVLAKKGTPKTPLPEKVPPPKPAVTDFRSVLGAK 1000
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------                    -------------------                  ------------------                                                 ----     -- ----------------- --             ----------------------                 ---GF         P-3o78B01 B:129-374                                                                                                                                                                                                                                                                                                                                                                                                                             ---------------------                                                                       ------------                         ---------- Pfam domains (1)
           Pfam domains (2) ---------------------------                    -------------------                  ------------------                                                 ----     -- ----------------- --             ----------------------                 ---GF         P-3o78B02 B:129-374                                                                                                                                                                                                                                                                                                                                                                                                                             ---------------------                                                                       ------------                         ---------- Pfam domains (2)
         Sec.struct. author ......hhhhhhhhhhhhhhhhh....--------------------eeeeeehhhheeeeeeeee------------------ee.....eeeeeeeeeee-------------------------------------------------e...-----..-......eeeeeeeeee.-..-------------.....eeeeeeeeeee......-----------------.hhhh---------hhh..eeeeeeeeeee..eeeeeeee----------------eeeehhh.e-----eeeeee....--------------------------....hhhhhh...-.----------hhhhh.-------------------------------.hhhhh..hhhhhh....-----------eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee.----------------------------------......--------..............hhhhhhhhhhhhhhhh-.....eehhhhhhhhhhhhh..------------.hhhhhhhhhhh........eehhhhhhhhhh..hhhhh-----------------------------hhhhhhhhhhhh----......--.hhhhhhhhhhhh....hhhhhhhhhh-----------------------------------------------------------------------hhh.......hh-------------------------hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-------S--------------------------------------------------------------------------M---------------------------------------------------------------------I----------------------------------------------------------------LI----------S--------------------------------------------------------------------------------------------------------G-----------------------------------GL------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3o78 B    1 GPGSSRRKWNKTGHAVRAIGRLSSLEN--------------------VYIMADKQKNGIKANFKIR------------------HNVEDGSVQLADHYQQNT-------------------------------------------------PIGD-----GP-VLLPDNHYLSFQSVLSK-DP-------------NEKRDHMVLLEFVTAAGITLGM-----------------SKGEE---------LFTGVVPILVELDGDVNGHKFSVSGE----------------GEGDATYGK-----LTLKLICTTG--------------------------KLPVPWPTLVTTL-s----------LKCFAR-------------------------------YPDHMKQHDFFKSAMPEG-----------YVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIG----------------------------------FKEDGN--------ILGHKLEYNTRDQLTEEQIAEFKEAFSLFD-KDGDGTITTKELGTVMRSLGQN------------PTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS-----------------------------EEEIREAFRVFD----KDGNGY--ISAAELRHVMTNLGEKLTDEEVDEMIR-----------------------------------------------------------------------EADIDGDGQVNY-------------------------EEFVQMMTAK  417
                                    10        20      |  -         -       |30        40     |   -         -    |   52        62 |       -         -         -         -         - |  |    -|| |    77        87 ||      -      | 93       103       | -         -     | 130       131       141       151    |    -         - |     165     | 170    |    -         -         - |     184   | |   -      |195 |       -         -         -   |   204       214|        -  |    223       233       243       253         -         -         -    |  259       261       271       281       290       300       310|        -   |   318       328       338       348 |       -         -         - |     359  |    365  |  | 373       383       393 |       -         -         -         -         -         -         -   |   402    |    -         -         -|      417
                                                     27                   28                46                 47               64                                                65 68    69| |              87 ||            90                  111               126 130       131                      156              157     165   166      175                        176         188 |        192  197                             198              215         216                                  253                                254  259      260                          289 |                  311          312                                   350                           351        362  363  368  |                       395                                                                     396        407                       408         
                                                                                                                                                                                            70 |                88|                                                                                                                                                                          190-CR2                                                                                                                                                                                           290                                                                                                                           369                                                                                                                                                
                                                                                                                                                                                              71                 89
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O78)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O78)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: GFP (101)
(-)
Family: GFP (101)

(-) Gene Ontology  (99, 102)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (GFP_AEQVI | P42212)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008218    bioluminescence    The production of light by certain enzyme-catalyzed reactions in cells.
    GO:0006091    generation of precursor metabolites and energy    The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Chain A,B   (MYLK_CHICK | P11799)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004687    myosin light chain kinase activity    Catalysis of the reaction: ATP + myosin-light-chain = ADP + myosin-light-chain phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0030335    positive regulation of cell migration    Any process that activates or increases the frequency, rate or extent of cell migration.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0006939    smooth muscle contraction    A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A,B   (CALM1_HUMAN | P0DP23)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CR2  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3o78)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3o78
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CALM1_HUMAN | P0DP23
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  GFP_AEQVI | P42212
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  MYLK_CHICK | P11799
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.11.18
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  614916
    Disease Information: OMIM
  616247
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CALM1_HUMAN | P0DP23
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  GFP_AEQVI | P42212
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  MYLK_CHICK | P11799
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM1_HUMAN | P0DP23: 1aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1iwq 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1wrz 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2i08 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2l7l 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2x0g 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3evv 3ewt 3ewv 3g43 3hr4 3j41 3o77 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dow 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv
        GFP_AEQVI | P42212: 1b9c 1bfp 1c4f 1cv7 1ema 1emb 1emc 1eme 1emf 1emg 1emk 1eml 1emm 1f09 1f0b 1gfl 1h6r 1hcj 1huy 1jby 1jbz 1jc0 1jc1 1kp5 1kyp 1kyr 1kys 1myw 1q4a 1q4b 1q4c 1q4d 1q4e 1q73 1qxt 1qy3 1qyf 1qyo 1qyq 1rm9 1rmm 1rmo 1rmp 1rrx 1s6z 1w7s 1w7t 1w7u 1yfp 1yhg 1yhh 1yhi 1yj2 1yjf 1z1p 1z1q 2ah8 2aha 2awj 2awk 2awl 2awm 2b3p 2b3q 2due 2duf 2dug 2duh 2dui 2emd 2emn 2emo 2fwq 2fzu 2g16 2g2s 2g3d 2g5z 2g6e 2h6v 2h9w 2hcg 2hfc 2hgd 2hgy 2hjo 2hqz 2hrs 2jad 2o24 2o29 2o2b 2okw 2oky 2q57 2q6p 2qrf 2qt2 2qu1 2qz0 2wsn 2wso 2wur 2y0g 2ydz 2ye0 2ye1 2yfp 3cb9 3cbe 3cd1 3cd9 3dpw 3dpx 3dpz 3dq1 3dq2 3dq3 3dq4 3dq5 3dq6 3dq7 3dq8 3dq9 3dqa 3dqc 3dqd 3dqe 3dqf 3dqh 3dqi 3dqj 3dqk 3dql 3dqm 3dqn 3dqo 3dqu 3ed8 3ek4 3ek7 3ek8 3ekh 3ekj 3evp 3evr 3evu 3evv 3g9a 3gex 3gj1 3gj2 3i19 3k1k 3la1 3o77 3ogo 3osq 3osr 3p28 3sg2 3sg3 3sg4 3sg5 3sg6 3sg7 3sry 3ss0 3ssh 3ssk 3ssl 3ssp 3sst 3ssv 3ssy 3st0 3sv5 3svb 3svc 3svd 3sve 3u8p 3ufz 3ug0 3v3d 3vht 3w1c 3w1d 3wlc 3wld 3ztf 4anj 4ar7 4as8 4b5y 4bdu 4en1 4eul 4ges 4gf6 4h47 4h48 4ik1 4ik3 4ik4 4ik5 4ik8 4ik9 4j88 4j89 4j8a 4jfg 4jrb 4ka9 4kag 4kex 4kf5 4kw4 4kw8 4kw9 4l12 4l13 4l1i 4lqt 4lqu 4lw5 4n3d 4ndj 4ndk 4ogs 4orn 4p1q 4p7h 4pa0 4pfe 4u2v 4xbi 4xgy 4xl5 4xov 4xow 4xvp 4z4k 4z4m 4zf3 4zf4 4zf5 5aqb 5dpg 5dph 5dpi 5dpj 5dqb 5dqm 5drf 5drg 5dtx 5dty 5dtz 5du0 5ehu 5f9g 5fgu 5fji 5hbd 5hge 5hw9 5hzo 5j2o 5j3n 5ktg 5t3i
        MYLK_CHICK | P11799: 1cdl 1qs7 1qtx 1vrk 2o5g 3evu 3evv 3o77 4oy4

(-) Related Entries Specified in the PDB File

3ek4 3ek7 3ek8 3ekh 3ekj 3evp 3evr 3evu 3evv 3o77