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Title :   STRUCTURE OF MN2+-BOUND N-TERMINAL DOMAIN OF CALMODULIN IN THE PRESENCE OF ZN2+

Authors :   F. T. Senguen, Z. Grabarek

Date :   27 Oct 11 (Deposition) - 08 Aug 12 (Release) - 03 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A (1x),B (1x)

Keywords :   Ef-Hand, Metal Binding, Calcium Regulation, Calcium-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. T. Senguen, Z. Grabarek
X-Ray Structures Of Magnesium And Manganese Complexes With The N-Terminal Domain Of Calmodulin: Insights Into The Mechanism And Specificity Of Metal Ion Binding To An Ef-Hand.
Biochemistry V. 51 6182 2012
PubMed-ID: 22803592 | Reference-DOI: 10.1021/BI300698H

Molecule 1 - CALMODULIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PAED4
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL DOMAIN RESIDUES 2-80
	Gene	:	CALM, CALM1, CALM2, CALM3, CALML2, CAM, CAM1, CAM2, CAM3, CAMB, CAMC, CAMIII
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CAM

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 10)

No.	Name	Count	Type	Full Name
1	MN	6	Ligand/Ion	MANGANESE (II) ION
2	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	MN	-1	Ligand/Ion	MANGANESE (II) ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	MN	-1	Ligand/Ion	MANGANESE (II) ION
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , HOH A:91 , HOH A:92 , MN A:102	BINDING SITE FOR RESIDUE MN A 100
02	AC2	SOFTWARE	ASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , HOH A:106 , HOH A:123	BINDING SITE FOR RESIDUE MN A 101
03	AC3	SOFTWARE	ASP A:2 , ASP A:22 , ASP A:24 , HOH A:92 , MN A:100 , HOH A:137 , HOH A:138	BINDING SITE FOR RESIDUE MN A 102
04	AC4	SOFTWARE	PHE A:19 , GLU A:31 , HOH A:93 , HOH A:94 , HOH A:114	BINDING SITE FOR RESIDUE MN A 103
05	AC5	SOFTWARE	ASP A:64 , GLU A:67	BINDING SITE FOR RESIDUE ZN A 104
06	AC6	SOFTWARE	HOH A:110 , ASP B:20 , ASP B:22 , ASP B:24 , THR B:26 , HOH B:85 , ZN B:102	BINDING SITE FOR RESIDUE MN B 100
07	AC7	SOFTWARE	ASP B:56 , ASP B:58 , ASN B:60 , THR B:62 , HOH B:88 , HOH B:89	BINDING SITE FOR RESIDUE MN B 101
08	AC8	SOFTWARE	GLU A:45 , HOH A:110 , ASP B:22 , ASP B:24 , MN B:100	BINDING SITE FOR RESIDUE ZN B 102
09	AC9	SOFTWARE	ASP B:64 , GLU B:67	BINDING SITE FOR RESIDUE ZN B 103
10	BC1	SOFTWARE	ASP B:50 , GLU B:54	BINDING SITE FOR RESIDUE ZN B 104

(no "SS Bond" information available for 3UCT)

(no "Cis Peptide Bond" information available for 3UCT)

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069222	N	54	I	CALM1_HUMAN	Disease (CPVT4)	267607276	A/B	N	53	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069222	N	54	I	CALM1_HUMAN	Disease (CPVT4)	267607276	A/B	N	53	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069222	N	54	I	CALM1_HUMAN	Disease (CPVT4)	267607276	A/B	N	53	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	CALM1_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
				CALM2_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
				CALM3_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	CALM1_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -
				CALM2_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -
				CALM3_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -

Biological Unit 1 (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	CALM1_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
				CALM2_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
				CALM3_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	CALM1_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -
				CALM2_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -
				CALM3_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -

Biological Unit 2 (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	CALM1_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
				CALM2_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
				CALM3_HUMAN	8-43 44-79 81-116 117-149	4	A:7-42 B:7-42 A:43-77 B:43-75 - -
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	CALM1_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -
				CALM2_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -
				CALM3_HUMAN	21-33 57-69 94-106 130-142	4	A:20-32 B:20-32 A:56-68 B:56-68 - -

(no "Exon" information available for 3UCT)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with CALM1_HUMAN | P0DP23 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:76
                                    12        22        32        42        52        62        72      
           CALM1_HUMAN    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 78
               SCOP domains d3ucta_ A: Calmodulin                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh......eee..hhhhhhhhh....hhhhhhhhhhhhh.....eeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------I------------------------ SAPs(SNPs)
                PROSITE (1) -----EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-77             PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------EF_HAND_1    -----------------------EF_HAND_1    --------- PROSITE (5)
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3uct A  2 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 77
                                    11        21        31        41        51        61        71

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with CALM2_HUMAN | P0DP24 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:76
                                    12        22        32        42        52        62        72      
           CALM2_HUMAN    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 78
               SCOP domains d3ucta_ A: Calmodulin                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh......eee..hhhhhhhhh....hhhhhhhhhhhhh.....eeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------I------------------------ SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-77             PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ------------------EF_HAND_1    -----------------------EF_HAND_1    --------- PROSITE (6)
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3uct A  2 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 77
                                    11        21        31        41        51        61        71

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with CALM3_HUMAN | P0DP25 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:76
                                    12        22        32        42        52        62        72      
           CALM3_HUMAN    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 78
               SCOP domains d3ucta_ A: Calmodulin                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh......eee..hhhhhhhhh....hhhhhhhhhhhhh.....eeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------I------------------------ SAPs(SNPs)
                PROSITE (2) -----EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-77             PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------EF_HAND_1    -----------------------EF_HAND_1    --------- PROSITE (4)
                 Transcript ---------------------------------------------------------------------------- Transcript
                  3uct A  2 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 77
                                    11        21        31        41        51        61        71

Chain B from PDB  Type:PROTEIN  Length:72
 aligned with CALM1_HUMAN | P0DP23 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:72
                                    14        24        34        44        54        64        74  
           CALM1_HUMAN    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76
               SCOP domains d3uctb_ B: Calmodulin                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh......eeehhhhhhhhhhh....hhhhhhhhhhhhh.....eeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I---------------------- SAPs(SNPs)
                PROSITE (1) ---EF_HAND_2  PDB: B:7-42 UniProt: 8-43EF_HAND_2  PDB: B:43-75           PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (5)
                 Transcript ------------------------------------------------------------------------ Transcript
                  3uct B  4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 75
                                    13        23        33        43        53        63        73

Chain B from PDB  Type:PROTEIN  Length:72
 aligned with CALM2_HUMAN | P0DP24 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:72
                                    14        24        34        44        54        64        74  
           CALM2_HUMAN    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76
               SCOP domains d3uctb_ B: Calmodulin                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh......eeehhhhhhhhhhh....hhhhhhhhhhhhh.....eeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I---------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ---EF_HAND_2  PDB: B:7-42 UniProt: 8-43EF_HAND_2  PDB: B:43-75           PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (6)
                 Transcript ------------------------------------------------------------------------ Transcript
                  3uct B  4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 75
                                    13        23        33        43        53        63        73

Chain B from PDB  Type:PROTEIN  Length:72
 aligned with CALM3_HUMAN | P0DP25 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:72
                                    14        24        34        44        54        64        74  
           CALM3_HUMAN    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76
               SCOP domains d3uctb_ B: Calmodulin                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh......eeehhhhhhhhhhh....hhhhhhhhhhhhh.....eeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------I---------------------- SAPs(SNPs)
                PROSITE (2) ---EF_HAND_2  PDB: B:7-42 UniProt: 8-43EF_HAND_2  PDB: B:43-75           PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (4)
                 Transcript ------------------------------------------------------------------------ Transcript
                  3uct B  4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 75
                                    13        23        33        43        53        63        73

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Superfamilies( (-)

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Protein Domains( (-)

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Organisms( (-)

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Class: All alpha proteins (14657)

Fold: EF Hand-like (739)

Superfamily: EF-hand (657)

Family: Calmodulin-like (356)

Protein domain: Calmodulin (152)

Human (Homo sapiens) [TaxId: 9606] (74)

1a	d3ucta_	A:
1b	d3uctb_	B:

(no "CATH Domain" information available for 3UCT)

(no "Pfam Domain" information available for 3UCT)

Asymmetric Unit(hide GO term definitions)

Chain A,B (CALM1_HUMAN | P0DP23)

Chain A,B (CALM2_HUMAN | P0DP24)

Chain A,B (CALM3_HUMAN | P0DP25)

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	3uct
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Description

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Ligands, Modified Residues, Ions (2, 10)

Sites (10, 10)

SS Bonds (0, 0)

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