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(-) Description

Title :  SOLUTION OF THE VARIABLY-TWINNED STRUCTURE OF A NOVEL CALMODULIN-PEPTIDE COMPLEX IN A NOVEL CONFIGURATION
 
Authors :  J. P. Keller
Date :  11 Sep 15  (Deposition) - 10 Aug 16  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Calmodulin-Peptide Complex, Calcium Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Keller
Solution Of The Structure Of A Calmodulin-Peptide Complex I A Novel Configuration From A Variably Twinned Data Set.
Acta Crystallogr D Struct V. 73 22 2017 Biol
PubMed-ID: 28045382  |  Reference-DOI: 10.1107/S2059798316019318

(-) Compounds

Molecule 1 - CALMODULIN
    Chains: A, C, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, CAM3, CAMC, CAMIII
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CAM
 
Molecule 2 - CHLORIDE ANION EXCHANGER
    Chains: B, D, F, H
    Engineered: YES
    Fragment: PEPTIDE (UNP RESIDUES 563-583)
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: SLC26A3 TRANSPORTER, DOWN-REGULATED IN ADENOMA, PROTEIN DRA, SOLUTE CARRIER FAMILY 26 MEMBER 3
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 38)

Asymmetric Unit (5, 38)
No.NameCountTypeFull Name
1CA16Ligand/IonCALCIUM ION
2CL11Ligand/IonCHLORIDE ION
3NA5Ligand/IonSODIUM ION
4NH24Mod. Amino AcidAMINO GROUP
5SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NA-1Ligand/IonSODIUM ION
4NH21Mod. Amino AcidAMINO GROUP
5SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NA-1Ligand/IonSODIUM ION
4NH21Mod. Amino AcidAMINO GROUP
5SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NA-1Ligand/IonSODIUM ION
4NH21Mod. Amino AcidAMINO GROUP
5SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NA-1Ligand/IonSODIUM ION
4NH21Mod. Amino AcidAMINO GROUP
5SO41Ligand/IonSULFATE ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:35 , ARG A:38 , HOH A:383 , HOH C:432 , HOH G:491 , HOH G:529binding site for residue SO4 A 201
02AC2SOFTWAREASP A:94 , ASP A:96 , ASN A:98 , TYR A:100 , GLU A:105 , HOH A:452binding site for residue CA A 202
03AC3SOFTWAREASP A:57 , ASP A:59 , ASN A:61 , THR A:63 , GLU A:68 , HOH A:338binding site for residue CA A 203
04AC4SOFTWAREASP A:21 , ASP A:23 , ASP A:25 , THR A:27 , GLU A:32 , HOH A:390binding site for residue CA A 204
05AC5SOFTWAREASP A:130 , ASP A:132 , ASP A:134 , GLN A:136 , GLU A:141 , HOH A:328binding site for residue CA A 205
06AC6SOFTWAREGLU A:7 , HOH A:501binding site for residue CL A 206
07AC7SOFTWAREGLU A:7 , HOH A:501 , HOH A:515binding site for residue NA A 207
08AC8SOFTWAREASP C:94 , ASP C:96 , ASN C:98 , TYR C:100 , GLU C:105 , HOH C:455binding site for residue CA C 201
09AC9SOFTWAREASP C:130 , ASP C:132 , ASP C:134 , GLN C:136 , GLU C:141 , HOH C:320binding site for residue CA C 202
10AD1SOFTWAREASP C:57 , ASP C:59 , ASN C:61 , THR C:63 , GLU C:68 , HOH C:309 , HOH C:391binding site for residue CA C 203
11AD2SOFTWAREASP C:21 , ASP C:23 , ASP C:25 , THR C:27 , GLU C:32 , HOH C:363binding site for residue CA C 204
12AD3SOFTWAREHOH A:438 , LYS C:95binding site for residue CL C 205
13AD4SOFTWARETHR C:45 , GLU C:46 , ASN C:61 , HOH C:545 , HOH C:556binding site for residue CL C 206
14AD5SOFTWAREARG C:38 , HOH C:419binding site for residue CL C 207
15AD6SOFTWAREASP C:119 , GLU C:120 , ASP C:123binding site for residue NA C 208
16AD7SOFTWAREGLU C:83 , HOH E:350binding site for residue NA C 209
17AD8SOFTWAREGLU C:140 , VAL C:143 , HOH C:340 , GLU G:83binding site for residue NA C 210
18AD9SOFTWAREASP E:57 , ASP E:59 , ASN E:61 , THR E:63 , GLU E:68 , HOH E:354binding site for residue CA E 201
19AE1SOFTWAREASP E:21 , ASP E:23 , ASP E:25 , THR E:27 , GLU E:32 , HOH E:402binding site for residue CA E 202
20AE2SOFTWAREASP E:94 , ASP E:96 , ASN E:98 , TYR E:100 , GLU E:105 , HOH E:491binding site for residue CA E 203
21AE3SOFTWAREASP E:130 , ASP E:132 , ASP E:134 , GLN E:136 , GLU E:141 , HOH E:349binding site for residue CA E 204
22AE4SOFTWAREPRO A:67 , GLU A:68 , THR A:71 , LYS E:14 , HOH E:512 , HOH E:566binding site for residue CL E 205
23AE5SOFTWARELYS E:95 , HOH E:342binding site for residue CL E 206
24AE6SOFTWARETHR E:6 , GLU E:7 , HOH E:388 , HOH E:476binding site for residue CL E 207
25AE7SOFTWAREGLN F:575 , GLY F:578 , ILE F:580 , GLN F:581binding site for residue CL F 601
26AE8SOFTWAREILE E:86 , ARG F:572 , GLN F:575binding site for residue CL F 602
27AE9SOFTWAREHOH E:570 , THR G:35 , ARG G:38 , HOH G:370 , HOH G:380 , HOH G:409binding site for residue SO4 G 201
28AF1SOFTWAREASP G:57 , ASP G:59 , ASN G:61 , THR G:63 , GLU G:68 , HOH G:440binding site for residue CA G 202
29AF2SOFTWAREASP G:94 , ASP G:96 , ASN G:98 , TYR G:100 , GLU G:105 , HOH G:456binding site for residue CA G 203
30AF3SOFTWAREASP G:21 , ASP G:23 , ASP G:25 , THR G:27 , GLU G:32 , HOH G:334binding site for residue CA G 204
31AF4SOFTWAREASP G:130 , ASP G:132 , ASP G:134 , GLN G:136 , GLU G:141 , HOH G:399binding site for residue CA G 205
32AF5SOFTWAREARG E:91 , ARG G:87binding site for residue CL G 206
33AF6SOFTWAREARG E:107 , ASP G:79binding site for residue NA G 207
34AF7SOFTWAREGLN H:575 , GLY H:578 , LEU H:579 , ILE H:580 , GLN H:581binding site for residue CL H 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DOW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg H:564 -Asn H:565

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DOW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DOW)

(-) Exons   (0, 0)

(no "Exon" information available for 5DOW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhh........eehhhhhhhhhhhh....hhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dow A   2 AYQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141        


Chain B from PDB  Type:PROTEIN  Length:20
                                                    
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 5dow B 565 NKALKKIRKLQKRGLIQMTx 584
                                   574       584
                                             584-NH2


Chain C from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dow C   2 AYQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141      


Chain D from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 5dow D 563 KRNKALKKIRKLQKRGLIQMTx 584
                                   572       582 |
                                               584-NH2


Chain E from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dow E   2 AYQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       


Chain F from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 5dow F 564 RNKALKKIRKLQKRGLIQMTx 584
                                   573       583|
                                              584-NH2


Chain G from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhh.........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dow G   2 AYQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141      


Chain H from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 5dow H 564 RNKALKKIRKLQKRGLIQMTx 584
                                   573       583|
                                              584-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DOW)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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  CALM1_HUMAN | P0DP23
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM1_HUMAN | P0DP23: 1aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1iwq 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1wrz 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2i08 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2l7l 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2x0g 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3evv 3ewt 3ewv 3g43 3hr4 3j41 3o77 3o78 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv
        CALM2_HUMAN | P0DP24: 1aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1iwq 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2x0g 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3ewt 3ewv 3g43 3hr4 3j41 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv
        CALM3_HUMAN | P0DP25: 1aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1iwq 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2x0g 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3ewt 3ewv 3g43 3hr4 3j41 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5DOW)