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3O78
Biol. Unit 2
Info
Asym.Unit (139 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 3 (130 KB)
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(1)
Title
:
THE STRUCTURE OF CA2+ SENSOR (CASE-12)
Authors
:
L. Leder, W. Stark, F. Freuler, M. Marsh, M. Meyerhofer, T. Stettler, L. O. V. Britanova, L. A. Strukova, D. M. Chudakov
Date
:
30 Jul 10 (Deposition) - 29 Sep 10 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Circular Permutated Green Fluorescent Protein, Genetically Encoded, Gfp Calmodulin M13-Peptide, Calcium Sensor, M13-Peptide, Gyg Naturally Modified Tripeptide Acts As Chromophore, Fluorescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Leder, W. Stark, F. Freuler, M. Marsh, M. Meyerhofer, T. Stettler, L. M. Mayr, O. V. Britanova, L. A. Strukova, D. M. Chudakov, E. A. Souslova
The Structure Of Ca2+ Sensor Case16 Reveals The Mechanism O Reaction To Low Ca2+ Concentrations
Sensors (Basel) V. 10 8143 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROX... (CR2a)
2b: {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROX... (CR2b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CR2
1
Mod. Amino Acid
{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ASP B:289 , ASP B:291 , ASP B:293 , THR B:295 , GLU B:300
BINDING SITE FOR RESIDUE CA B 501
2
AC6
SOFTWARE
ASP B:325 , ASP B:327 , ASN B:329 , THR B:331 , GLU B:336
BINDING SITE FOR RESIDUE CA B 502
3
AC7
SOFTWARE
ASP B:362 , ASP B:364 , ASN B:366 , TYR B:368 , GLU B:373
BINDING SITE FOR RESIDUE CA B 503
4
AC8
SOFTWARE
ASP B:398 , ASP B:400 , ASP B:402 , GLN B:404 , GLU B:409
BINDING SITE FOR RESIDUE CA B 504
[
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SAPs(SNPs)/Variants
(15, 15)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_GFP_AEQVI_001 (F224Y, chain B, )
02: VAR_GFP_AEQVI_002 (T232S, chain B, )
03: VAR_GFP_AEQVI_003 (L265M, chain B, )
04: VAR_069222 (N322I, chain B, )
05: VAR_048585 (M341T, chain B, )
06: VAR_073275 (F358L, chain B, )
07: VAR_GFP_AEQVI_004 (R359I, chain B, )
08: VAR_073276 (D364V, chain B, )
09: VAR_073277 (N366I, chain B, )
10: VAR_069223 (N366S, chain B, )
11: VAR_073278 (D398G, chain B, )
12: VAR_073279 (D400E, chain B, )
13: VAR_073280 (D402H, chain B, )
14: VAR_073281 (Q404P, chain B, )
15: VAR_073282 (F410L, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_GFP_AEQVI_001
*
F
100
Y
GFP_AEQVI
---
---
B
F
224
Y
02
UniProt
VAR_GFP_AEQVI_002
*
T
108
S
GFP_AEQVI
---
---
B
T
232
S
03
UniProt
VAR_GFP_AEQVI_003
*
L
141
M
GFP_AEQVI
---
---
B
L
265
M
04
UniProt
VAR_069222
N
54
I
CALM_HUMAN
Disease (CPVT4)
---
B
N
322
I
05
UniProt
VAR_048585
M
73
T
CALM_HUMAN
Polymorphism
41389749
B
M
341
T
06
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
B
F
358
L
07
UniProt
VAR_GFP_AEQVI_004
*
V
219
I
GFP_AEQVI
---
---
B
R
359
I
08
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
B
D
364
V
09
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
B
N
366
I
10
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
B
N
366
S
11
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
B
D
398
G
12
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
B
D
400
E
13
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
B
D
402
H
14
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
B
Q
404
P
15
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
B
F
410
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (B:385-417)
2: EF_HAND_1 (B:398-410)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_HUMAN
8-43
44-79
81-116
117-149
4
-
B:276-311
-
B:312-347
-
B:349-384
-
B:385-417
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_HUMAN
21-33
57-69
94-106
130-142
4
-
B:289-301
-
B:325-337
-
B:362-374
-
B:398-410
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_GFP_3o78B01 (B:129-374)
1b: PFAM_GFP_3o78B02 (B:129-374)
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)
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)
(
)
Clan
:
GFP
(101)
Family
:
GFP
(101)
Aequorea victoria (Jellyfish)
(53)
1a
GFP-3o78B01
B:129-374
1b
GFP-3o78B02
B:129-374
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 2 (67 KB)
Header - Biol.Unit 2
Biol.Unit 3 (130 KB)
Header - Biol.Unit 3
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