4JPZ - JenaLib

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Title :   VOLTAGE-GATED SODIUM CHANNEL 1.2 C-TERMINAL DOMAIN IN COMPLEX WITH FGF13U AND CA2+/CALMODULIN

Authors :   C. Wang, B. C. Chung, H. Yan, H. G. Wang, S. Y. Lee, G. S. Pitt

Date :   19 Mar 13 (Deposition) - 16 Apr 14 (Release) - 03 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.02

Chains :   Asym. Unit : A,B,C,E,H,I
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: E,H,I  (1x)

Keywords :   Ef Hand And Iq Motif, Ion Channel, Membrane, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Wang, B. C. Chung, H. Yan, H. G. Wang, S. Y. Lee, G. S. Pitt
Structural Analyses Of Ca(2+)/Cam Interaction With Nav Channel C-Termini Reveal Mechanisms Of Calcium-Dependent Regulation.
Nat Commun V. 5 4896 2014
PubMed-ID: 25232683 | Reference-DOI: 10.1038/NCOMMS5896

Molecule 1 - FIBROBLAST GROWTH FACTOR 13
	Chains	:	A, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	FGF13, FHF2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FGF-13, FIBROBLAST GROWTH FACTOR HOMOLOGOUS FACTOR 2, FHF-2

Molecule 2 - SODIUM CHANNEL PROTEIN TYPE 2 SUBUNIT ALPHA
	Chains	:	B, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	SCN2A, NAC2, SCN2A1, SCN2A2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HBSC II, SODIUM CHANNEL PROTEIN BRAIN II SUBUNIT ALPHA, SODIUM CHANNEL PROTEIN TYPE II SUBUNIT ALPHA, VOLTAGE-GATED SODIUM CHANNEL SUBUNIT ALPHA NAV1.2

Molecule 3 - CALMODULIN
	Chains	:	C, I
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, CAM3, CAMC, CAMIII
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CAM

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	E	H	I
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				E	H	I

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 8)

No.	Name	Count	Type	Full Name
1	CA	8	Ligand/Ion	CALCIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP C:21 , ASP C:23 , ASP C:25 , THR C:27 , GLU C:32 , HOH C:301	BINDING SITE FOR RESIDUE CA C 201
2	AC2	SOFTWARE	ASP C:57 , ASP C:59 , ASN C:61 , THR C:63 , GLU C:68 , HOH C:302	BINDING SITE FOR RESIDUE CA C 202
3	AC3	SOFTWARE	ASP C:94 , ASP C:96 , ASN C:98 , TYR C:100 , HOH C:303 , HOH C:304	BINDING SITE FOR RESIDUE CA C 203
4	AC4	SOFTWARE	ASP C:130 , ASP C:132 , ASP C:134 , GLN C:136 , HOH C:305 , HOH C:306	BINDING SITE FOR RESIDUE CA C 204
5	AC5	SOFTWARE	ASP I:21 , ASP I:23 , ASP I:25 , THR I:27 , GLU I:32	BINDING SITE FOR RESIDUE CA I 201
6	AC6	SOFTWARE	ASP I:57 , ASP I:59 , ASN I:61 , THR I:63 , GLU I:68	BINDING SITE FOR RESIDUE CA I 202
7	AC7	SOFTWARE	ASP I:94 , ASP I:96 , ASN I:98 , TYR I:100	BINDING SITE FOR RESIDUE CA I 203
8	AC8	SOFTWARE	ASP I:130 , ASP I:132 , ASP I:134 , GLN I:136	BINDING SITE FOR RESIDUE CA I 204

(no "SS Bond" information available for 4JPZ)

Asymmetric Unit

No.	Residues
1	Pro B:1827	-	Pro B:1828
2	Lys B:1833	-	Pro B:1834
3	Ser B:1848	-	Gly B:1849
4	Leu B:1866	-	Gly B:1867
5	Pro H:1827	-	Pro H:1828
6	Lys H:1833	-	Pro H:1834
7	Ser H:1848	-	Gly H:1849

(no "SAP(SNP)/Variant" information available for 4JPZ)

(no "PROSITE Motif" information available for 4JPZ)

(no "Exon" information available for 4JPZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................hhhh.....................................hhhh.......................................hhhhh...hhhh................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4jpz A   11 PQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSELFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHD  158
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..........hhhhhhhh..........hhhhhh.............hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4jpz B 1788 EPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIIIQRAYRRYLLKQKVKKVS 1929
                                  1797      1807      1817      1827      1837      1847      1857      1867      1877      1887      1897      1907      1917      1927

Chain C from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.......hhhhhhhhhhhhh...hhhhhhhhhhh.........hhhhhhhhhhhhhh.......hhhhhhh..........hhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4jpz C    7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  149
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain E from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................hhhh.....................................hhh........................................hhhhh...hhhh................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4jpz E   11 PQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSELFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHD  158
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain H from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..........hhhhhhhh..........hhhhhh.............hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4jpz H 1788 EPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIIIQRAYRRYLLKQKVKKVS 1929
                                  1797      1807      1817      1827      1837      1847      1857      1867      1877      1887      1897      1907      1917      1927

Chain I from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.......hhhhhhhhhhhhh...hhhhhhhhhhh.........hhhhhhhhhhhhhh.......hhhhhhh..........hhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4jpz I    7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  149
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4JPZ)

(no "CATH Domain" information available for 4JPZ)

(no "Pfam Domain" information available for 4JPZ)

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	Cis Peptide Bonds
		Leu B:1866 - Gly B:1867	[ RasMol ]
		Lys B:1833 - Pro B:1834	[ RasMol ]
		Lys H:1833 - Pro H:1834	[ RasMol ]
		Pro B:1827 - Pro B:1828	[ RasMol ]
		Pro H:1827 - Pro H:1828	[ RasMol ]
		Ser B:1848 - Gly B:1849	[ RasMol ]
		Ser H:1848 - Gly H:1849	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (7, 7)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (134, 148)

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