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3O78
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 3 (130 KB)
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(1)
Title
:
THE STRUCTURE OF CA2+ SENSOR (CASE-12)
Authors
:
L. Leder, W. Stark, F. Freuler, M. Marsh, M. Meyerhofer, T. Stettler, L. O. V. Britanova, L. A. Strukova, D. M. Chudakov
Date
:
30 Jul 10 (Deposition) - 29 Sep 10 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Circular Permutated Green Fluorescent Protein, Genetically Encoded, Gfp Calmodulin M13-Peptide, Calcium Sensor, M13-Peptide, Gyg Naturally Modified Tripeptide Acts As Chromophore, Fluorescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Leder, W. Stark, F. Freuler, M. Marsh, M. Meyerhofer, T. Stettler, L. M. Mayr, O. V. Britanova, L. A. Strukova, D. M. Chudakov, E. A. Souslova
The Structure Of Ca2+ Sensor Case16 Reveals The Mechanism O Reaction To Low Ca2+ Concentrations
Sensors (Basel) V. 10 8143 2010
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROX... (CR2a)
2b: {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROX... (CR2b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
CR2
2
Mod. Amino Acid
{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:289 , ASP A:291 , ASP A:293 , THR A:295 , GLU A:300
BINDING SITE FOR RESIDUE CA A 501
2
AC2
SOFTWARE
ASP A:325 , ASP A:327 , ASN A:329 , THR A:331 , GLU A:336
BINDING SITE FOR RESIDUE CA A 502
3
AC3
SOFTWARE
ASP A:362 , ASP A:364 , ASN A:366 , TYR A:368 , GLU A:373
BINDING SITE FOR RESIDUE CA A 503
4
AC4
SOFTWARE
ASP A:398 , ASP A:400 , ASP A:402 , GLN A:404 , GLU A:409 , HOH A:448
BINDING SITE FOR RESIDUE CA A 504
5
AC5
SOFTWARE
ASP B:289 , ASP B:291 , ASP B:293 , THR B:295 , GLU B:300
BINDING SITE FOR RESIDUE CA B 501
6
AC6
SOFTWARE
ASP B:325 , ASP B:327 , ASN B:329 , THR B:331 , GLU B:336
BINDING SITE FOR RESIDUE CA B 502
7
AC7
SOFTWARE
ASP B:362 , ASP B:364 , ASN B:366 , TYR B:368 , GLU B:373
BINDING SITE FOR RESIDUE CA B 503
8
AC8
SOFTWARE
ASP B:398 , ASP B:400 , ASP B:402 , GLN B:404 , GLU B:409
BINDING SITE FOR RESIDUE CA B 504
[
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SAPs(SNPs)/Variants
(15, 30)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_GFP_AEQVI_001 (F224Y, chain A/B, )
02: VAR_GFP_AEQVI_002 (T232S, chain A/B, )
03: VAR_GFP_AEQVI_003 (L265M, chain A/B, )
04: VAR_069222 (N322I, chain A/B, )
05: VAR_048585 (M341T, chain A/B, )
06: VAR_073275 (F358L, chain A/B, )
07: VAR_GFP_AEQVI_004 (R359I, chain A/B, )
08: VAR_073276 (D364V, chain A/B, )
09: VAR_073277 (N366I, chain A/B, )
10: VAR_069223 (N366S, chain A/B, )
11: VAR_073278 (D398G, chain A/B, )
12: VAR_073279 (D400E, chain A/B, )
13: VAR_073280 (D402H, chain A/B, )
14: VAR_073281 (Q404P, chain A/B, )
15: VAR_073282 (F410L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_GFP_AEQVI_001
*
F
100
Y
GFP_AEQVI
---
---
A/B
F
224
Y
02
UniProt
VAR_GFP_AEQVI_002
*
T
108
S
GFP_AEQVI
---
---
A/B
T
232
S
03
UniProt
VAR_GFP_AEQVI_003
*
L
141
M
GFP_AEQVI
---
---
A/B
L
265
M
04
UniProt
VAR_069222
N
54
I
CALM_HUMAN
Disease (CPVT4)
---
A/B
N
322
I
05
UniProt
VAR_048585
M
73
T
CALM_HUMAN
Polymorphism
41389749
A/B
M
341
T
06
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
A/B
F
358
L
07
UniProt
VAR_GFP_AEQVI_004
*
V
219
I
GFP_AEQVI
---
---
A/B
R
359
I
08
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
A/B
D
364
V
09
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
A/B
N
366
I
10
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
A/B
N
366
S
11
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
A/B
D
398
G
12
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
A/B
D
400
E
13
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
A/B
D
402
H
14
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
A/B
Q
404
P
15
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
A/B
F
410
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:276-311,B:276-311|A:312-347,B:31...)
2: EF_HAND_1 (A:289-301,B:289-301|A:325-337,B:32...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_HUMAN
8-43
44-79
81-116
117-149
8
A:276-311
B:276-311
A:312-347
B:312-347
A:349-384
B:349-384
A:385-417
B:385-417
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_HUMAN
21-33
57-69
94-106
130-142
8
A:289-301
B:289-301
A:325-337
B:325-337
A:362-374
B:362-374
A:398-410
B:398-410
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_GFP_3o78B01 (B:129-374)
1b: PFAM_GFP_3o78B02 (B:129-374)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GFP
(101)
Family
:
GFP
(101)
Aequorea victoria (Jellyfish)
(53)
1a
GFP-3o78B01
B:129-374
1b
GFP-3o78B02
B:129-374
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Atom Selection
(currently selected atoms:
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)
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Nucleic
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Hetero
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 2 (67 KB)
Header - Biol.Unit 2
Biol.Unit 3 (130 KB)
Header - Biol.Unit 3
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