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(-) Description

Title :  CALCIUM-FREE CAMPARI V0.2
 
Authors :  B. F. Fosque, E. R. Schreiter
Date :  10 Feb 14  (Deposition) - 18 Feb 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym./Biol. Unit :  A
Keywords :  Calcium, Fluorescent Protein, Photoconversion, Integrator, Engineered Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. F. Fosque, Y. Sun, H. Dana, C. T. Yang, T. Ohyama, M. R. Tadross, R. Patel, M. Zlatic, D. S. Kim, M. B. Ahrens, V. Jayaraman, L. L. Looger, E. R. Schreiter
Neural Circuits. Labeling Of Active Neural Circuits In Vivo With Designed Calcium Integrators.
Science V. 347 755 2015
PubMed-ID: 25678659  |  Reference-DOI: 10.1126/SCIENCE.1260922

(-) Compounds

Molecule 1 - CHIMERA PROTEIN OF CALMODULIN, GPF-LIKE PROTEIN EOSFP, AND MYOSIN LIGHT CHAIN KINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: T7 EXPRESS
    Expression System Taxid: 562
    Gene: CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CAM3, CAMC
    Organism Common: RAT, LOBED BRAIN CORAL, CHICKEN
    Organism Scientific: RATTUS NORVEGICUS, LOBOPHYLLIA HEMPRICHII, GALLUS GALLUS
    Organism Taxid: 10116, 46758, 9031
    Synonym: CAM

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CR81Mod. Amino Acid2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2GOL2Ligand/IonGLYCEROL
3SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:43 , GLU A:44 , LYS A:277 , ARG A:388binding site for residue SO4 A 501
2AC2SOFTWAREARG A:156 , ARG A:181binding site for residue SO4 A 502
3AC3SOFTWAREARG A:36 , CYS A:202 , TYR A:218 , HIS A:220binding site for residue GOL A 503
4AC4SOFTWARELYS A:12 , ARG A:181 , THR A:183 , GLU A:330 , HOH A:691binding site for residue GOL A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OY4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:288 -Pro A:289
2Phe A:323 -Pro A:324

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OY4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OY4)

(-) Exons   (0, 0)

(no "Exon" information available for 4OY4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.....eee..hhhhhhhhh....hhhhhhhhhhh.......eeehhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhh..eeeeeee..eeeeeeeeeeee....eeeeeeeeeeee..........eeeeeeeeeeee.....eeeeeeeeeee...........eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee......hhhhhh................hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..........hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oy4 A   2 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFNYEEFVQMMTAKLECEKMYVRDGVLTGDIHMALLLEGNAHYRCDFRTTYKAKEKGVKLPGYHFVDHCIEILSHDKDYNKVKLYEHAVAHSGLMVSAIKPDMKIKLRMEGNVNGHHFVIDGDGTGKPYEGKQTMDLEVKEGGPLPFAFDILTTAFhNRVFVKYPDNIQDYFKQSFPKGYSWERSMTFEDGGICYARNDITMEGDTFYNKVRFYGTNFPANGPVMQKKTLKWMPSWTRSSRRKWNKT 394
                                    11        21        31        41        51        61        71        81        91|      145       155       165       175       185       195       205       215       225 ||    247       257       267       277       287       297   ||| 309       319       329       339       349       359       369       379       389     
                                                                                                                    91|                                                                                        227|                                                          301||                                                                                         
                                                                                                                    136                                                                                         240                                                           303-CR8                                                                                      
                                                                                                                                                                                                                                                                               305
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OY4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OY4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OY4)

(-) Gene Ontology  (84, 94)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:288 - Pro A:289   [ RasMol ]  
    Phe A:323 - Pro A:324   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM1_RAT | P0DP29: 1aji 1cm1 1cm4 1deg 1g4y 1k90 1k93 1lvc 1niw 1nkf 1qiv 1qiw 1qx5 1qx7 1sk6 1up5 2hqw 2mgu 2pq3 2ygg 3b32 3bxk 3bxl 3cln 3ek4 3ek7 3ek8 3ekh 3ekj 3evr 3evu 3evv 3ifk 3sg2 3sg3 3sg4 3sg5 3sg6 3sg7 3sjq 3wlc 3wld 4ehq 4g27 4g28 4i2y 4il1 4j9y 4j9z 4qnh 4rjd
        CALM2_RAT | P0DP30: 1aji 1cm1 1cm4 1deg 1g4y 1k90 1k93 1lvc 1niw 1nkf 1qiv 1qiw 1qx5 1qx7 1sk6 1up5 2hqw 2mgu 2pq3 2ygg 3b32 3bxk 3bxl 3cln 3evr 3evu 3ifk 3sjq 4ehq 4g27 4g28 4i2y 4il1 4j9y 4j9z 4qnh 4rjd
        CALM3_RAT | P0DP31: 1aji 1cm1 1cm4 1deg 1g4y 1k90 1k93 1lvc 1niw 1nkf 1qiv 1qiw 1qx5 1qx7 1sk6 1up5 2hqw 2mgu 2pq3 2ygg 3b32 3bxk 3bxl 3cln 3evr 3evu 3ifk 3sjq 4ehq 4g27 4g28 4i2y 4il1 4j9y 4j9z 4qnh 4rjd
        MYLK_CHICK | P11799: 1cdl 1qs7 1qtx 1vrk 2o5g 3evu 3evv 3o77 3o78
UniProtKB/TrEMBL
        Q5S6Z9_LOBHE | Q5S6Z9: 1zux 2btj 2vvh 2vvi 2vvj 3p8u 3s05 3tmr 3tmt 4ljb 4ljc 4ljd 4r6b 5dtl 5fvf 5fvg 5fvi
        Q6LDG3_CHICK | Q6LDG3: 3sg2 3sg3 3sg4 3sg5 3sg6 3sg7 3wlc 3wld 4i2y

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4OY4)