1J7P - JenaLib

NMR Structure - model 1 (Jmol Viewer)

NMR Structure - model 1, sites (Jmol Viewer)

NMR Structure - all models (Jmol Viewer)

Title :   SOLUTION STRUCTURE OF CALCIUM CALMODULIN C-TERMINAL DOMAIN

Authors :   J. J. Chou, C. B. Klee, A. Bax

Date :   17 May 01 (Deposition) - 07 Nov 01 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (3x)

Keywords :   Ef Hands, Helix Bundle, Calcium, Dipolar Coupling, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. J. Chou, S. Li, C. B. Klee, A. Bax
Solution Structure Of Ca(2+)-Calmodulin Reveals Flexible Hand-Like Properties Of Its Domains.
Nat. Struct. Biol. V. 8 990 2001
PubMed-ID: 11685248 | Reference-DOI: 10.1038/NSB1101-990
(for further references see the PDB file header)

Molecule 1 - CALMODULIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	AR58
	Expression System Taxid	:	562
	Fragment	:	C-TERMINAL DOMAIN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606


NMR Structure (3x)	:

Summary Information (see also Sequences/Alignments below)

NMR Structure (1, 2)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION

NMR Structure (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:93 , ASP A:95 , ASN A:97 , TYR A:99 , GLU A:104	BINDING SITE FOR RESIDUE CA A 1000
2	AC2	SOFTWARE	ASP A:129 , ASP A:131 , ASP A:133 , GLN A:135 , ASN A:137 , GLU A:140	BINDING SITE FOR RESIDUE CA A 1001

(no "SS Bond" information available for 1J7P)

(no "Cis Peptide Bond" information available for 1J7P)

NMR Structure (14, 14)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_073275	F	90	L	CALM1_HUMAN	Disease (LQT14)	730882253	A	F	89	L
02	UniProt	VAR_073276	D	96	V	CALM2_HUMAN	Disease (LQT15)	730882254	A	D	95	V
03	UniProt	VAR_073277	N	98	I	CALM2_HUMAN	Disease (LQT15)	398124647	A	N	97	I
04	UniProt	VAR_078541	N	98	S	CALM1_HUMAN	Disease (CPVT4)	398124647	A	N	97	S
05	UniProt	VAR_078543	N	98	S	CALM2_HUMAN	Disease (LQT15)	398124647	A	N	97	S
06	UniProt	VAR_078261	A	103	V	CALM3_HUMAN	Disease	---	A	A	102	V
07	UniProt	VAR_078542	D	130	G	CALM1_HUMAN	Disease (LQT14)	730882252	A	D	129	G
08	UniProt	VAR_078544	D	130	G	CALM2_HUMAN	Disease (LQT15)	730882252	A	D	129	G
09	UniProt	VAR_078262	D	130	V	CALM2_HUMAN	Disease (LQT15)	---	A	D	129	V
10	UniProt	VAR_073279	D	132	E	CALM2_HUMAN	Disease (LQT15)	398124648	A	D	131	E
11	UniProt	VAR_073280	D	134	H	CALM2_HUMAN	Disease (LQT15)	398124650	A	D	133	H
12	UniProt	VAR_073281	Q	136	P	CALM2_HUMAN	Disease (LQT15)	398124649	A	Q	135	P
13	UniProt	VAR_078263	E	141	G	CALM1_HUMAN	Disease (LQT14)	---	A	E	140	G
14	UniProt	VAR_073282	F	142	L	CALM1_HUMAN	Disease (LQT14)	11551462	A	F	141	L

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

NMR Structure (2, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	CALM1_HUMAN	8-43 44-79 81-116 117-149	1	- - - A:116-148
				CALM2_HUMAN	8-43 44-79 81-116 117-149	1	- - - A:116-148
				CALM3_HUMAN	8-43 44-79 81-116 117-149	1	- - - A:116-148
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	CALM1_HUMAN	21-33 57-69 94-106 130-142	2	- - A:93-105 A:129-141
				CALM2_HUMAN	21-33 57-69 94-106 130-142	2	- - A:93-105 A:129-141
				CALM3_HUMAN	21-33 57-69 94-106 130-142	2	- - A:93-105 A:129-141

(no "Exon" information available for 1J7P)

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:67
 aligned with CALM1_HUMAN | P0DP23 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:67
                                    92       102       112       122       132       142       
          CALM1_HUMAN    83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1j7pa_ A: Calmodulin                                               SCOP domains
               CATH domains 1j7pA00 A:82-148 EF-hand                                            CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) -------L-----V-I----V--------------------------G-E-H-P----GL------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------S-------------------------------G------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------S-------------------------------V------------------- SAPs(SNPs) (3)
                PROSITE (2) ------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) EF_HAND_2  PDB: - UniProt: 81-116 EF_HAND_2  PDB: A:116-148         PROSITE (3)
                PROSITE (4) -----------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (4)
                 Transcript ------------------------------------------------------------------- Transcript
                 1j7p A  82 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 148
                                    91       101       111       121       131       141

Chain A from PDB  Type:PROTEIN  Length:67
 aligned with CALM2_HUMAN | P0DP24 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:67
                                    92       102       112       122       132       142       
          CALM2_HUMAN    83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1j7pa_ A: Calmodulin                                               SCOP domains
               CATH domains 1j7pA00 A:82-148 EF-hand                                            CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) -------L-----V-I----V--------------------------G-E-H-P----GL------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------S-------------------------------G------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------S-------------------------------V------------------- SAPs(SNPs) (3)
                PROSITE (1) EF_HAND_2  PDB: - UniProt: 81-116 EF_HAND_2  PDB: A:116-148         PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -----------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (5)
                 Transcript ------------------------------------------------------------------- Transcript
                 1j7p A  82 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 148
                                    91       101       111       121       131       141

Chain A from PDB  Type:PROTEIN  Length:67
 aligned with CALM3_HUMAN | P0DP25 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:67
                                    92       102       112       122       132       142       
          CALM3_HUMAN    83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1j7pa_ A: Calmodulin                                               SCOP domains
               CATH domains 1j7pA00 A:82-148 EF-hand                                            CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) -------L-----V-I----V--------------------------G-E-H-P----GL------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------S-------------------------------G------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------S-------------------------------V------------------- SAPs(SNPs) (3)
                PROSITE (2) EF_HAND_2  PDB: - UniProt: 81-116 EF_HAND_2  PDB: A:116-148         PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -----------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (6)
                 Transcript ------------------------------------------------------------------- Transcript
                 1j7p A  82 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 148
                                    91       101       111       121       131       141

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

NMR Structure

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: EF Hand-like (739)

Superfamily: EF-hand (657)

Family: Calmodulin-like (356)

Protein domain: Calmodulin (152)

Human (Homo sapiens) [TaxId: 9606] (74)

d1j7pa_

NMR Structure

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Recoverin; domain 1 (474)

Homologous Superfamily: EF-hand (412)

Human (Homo sapiens) (106)

1j7pA00

A:82-148

(no "Pfam Domain" information available for 1J7P)

NMR Structure(hide GO term definitions)

Chain A (CALM3_HUMAN | P0DP25)

Chain A (CALM2_HUMAN | P0DP24)

Chain A (CALM1_HUMAN | P0DP23)

NMR Structure
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	1j7p
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	614916
		Disease Information	:	OMIM
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1cll	1.7 A CRYSTAL STRUCTURE OF CALCIUM LIGATED HUMAN CALMODULIN
1exr	1 A CRYSTAL STRUCTURE OF CALCIUM CALMODULIN (PARAMECIUM)
1f71	SOLUTION STRUCTURE OF APO CALMODULIN C-TERMINAL DOMAIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (14, 14)

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Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 1)

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Gene Ontology (81, 81)

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