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(-) Description

Title :  CRYSTAL STRUCTURE OF MARCKS CALMODULIN BINDING DOMAIN PEPTIDE COMPLEXED WITH CA2+/CALMODULIN
 
Authors :  E. Yamauchi, T. Nakatsu, M. Matsubara, H. Kato, H. Taniguchi, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  31 May 02  (Deposition) - 11 Mar 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Calmodulin-Target Peptide Complex, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Metal Binding Protein/Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Yamauchi, T. Nakatsu, M. Matsubara, H. Kato, H. Taniguchi
Crystal Structure Of A Marcks Peptide Containing The Calmodulin-Binding Domain In Complex With Ca(2+)-Calmodulin
Nat. Struct. Biol. V. 10 226 2003
PubMed-ID: 12577052  |  Reference-DOI: 10.1038/NSB900
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALMODULIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPACYC/HCAM
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - MARCKS
    ChainsB
    EngineeredYES
    FragmentCALMODULIN BINDING DOMAIN
    Other DetailsTHIS SEQUENCE OCCURS NATURALLY IN HUMANS, MOUSE, RAT AND BOVINE.
    SynonymMYRISTOYLATED ALANINE-RICH C-KINASE SUBSTRATE
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)AB
Biological Unit 2 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , GLU A:31 , HOH A:1076BINDING SITE FOR RESIDUE CA A 1001
2AC2SOFTWAREASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , GLU A:67 , HOH A:1077BINDING SITE FOR RESIDUE CA A 1002
3AC3SOFTWAREASP A:93 , ASP A:95 , ASN A:97 , TYR A:99 , GLU A:104 , HOH A:1029BINDING SITE FOR RESIDUE CA A 1003
4AC4SOFTWAREASP A:129 , ASP A:131 , ASP A:133 , GLN A:135 , GLU A:140 , HOH A:1006BINDING SITE FOR RESIDUE CA A 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IWQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1IWQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (15, 15)

Asymmetric Unit (15, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_069222N54ICALM1_HUMANDisease (CPVT4)267607276AN53I
02UniProtVAR_073275F90LCALM1_HUMANDisease (LQT14)730882253AF89L
03UniProtVAR_073276D96VCALM2_HUMANDisease (LQT15)730882254AD95V
04UniProtVAR_073277N98ICALM2_HUMANDisease (LQT15)398124647AN97I
05UniProtVAR_078541N98SCALM1_HUMANDisease (CPVT4)398124647AN97S
06UniProtVAR_078543N98SCALM2_HUMANDisease (LQT15)398124647AN97S
07UniProtVAR_078261A103VCALM3_HUMANDisease  ---AA102V
08UniProtVAR_078542D130GCALM1_HUMANDisease (LQT14)730882252AD129G
09UniProtVAR_078544D130GCALM2_HUMANDisease (LQT15)730882252AD129G
10UniProtVAR_078262D130VCALM2_HUMANDisease (LQT15)  ---AD129V
11UniProtVAR_073279D132ECALM2_HUMANDisease (LQT15)398124648AD131E
12UniProtVAR_073280D134HCALM2_HUMANDisease (LQT15)398124650AD133H
13UniProtVAR_073281Q136PCALM2_HUMANDisease (LQT15)398124649AQ135P
14UniProtVAR_078263E141GCALM1_HUMANDisease (LQT14)  ---AE140G
15UniProtVAR_073282F142LCALM1_HUMANDisease (LQT14)11551462AF141L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (15, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_069222N54ICALM1_HUMANDisease (CPVT4)267607276AN53I
02UniProtVAR_073275F90LCALM1_HUMANDisease (LQT14)730882253AF89L
03UniProtVAR_073276D96VCALM2_HUMANDisease (LQT15)730882254AD95V
04UniProtVAR_073277N98ICALM2_HUMANDisease (LQT15)398124647AN97I
05UniProtVAR_078541N98SCALM1_HUMANDisease (CPVT4)398124647AN97S
06UniProtVAR_078543N98SCALM2_HUMANDisease (LQT15)398124647AN97S
07UniProtVAR_078261A103VCALM3_HUMANDisease  ---AA102V
08UniProtVAR_078542D130GCALM1_HUMANDisease (LQT14)730882252AD129G
09UniProtVAR_078544D130GCALM2_HUMANDisease (LQT15)730882252AD129G
10UniProtVAR_078262D130VCALM2_HUMANDisease (LQT15)  ---AD129V
11UniProtVAR_073279D132ECALM2_HUMANDisease (LQT15)398124648AD131E
12UniProtVAR_073280D134HCALM2_HUMANDisease (LQT15)398124650AD133H
13UniProtVAR_073281Q136PCALM2_HUMANDisease (LQT15)398124649AQ135P
14UniProtVAR_078263E141GCALM1_HUMANDisease (LQT14)  ---AE140G
15UniProtVAR_073282F142LCALM1_HUMANDisease (LQT14)11551462AF141L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (15, 30)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_069222N54ICALM1_HUMANDisease (CPVT4)267607276AN53I
02UniProtVAR_073275F90LCALM1_HUMANDisease (LQT14)730882253AF89L
03UniProtVAR_073276D96VCALM2_HUMANDisease (LQT15)730882254AD95V
04UniProtVAR_073277N98ICALM2_HUMANDisease (LQT15)398124647AN97I
05UniProtVAR_078541N98SCALM1_HUMANDisease (CPVT4)398124647AN97S
06UniProtVAR_078543N98SCALM2_HUMANDisease (LQT15)398124647AN97S
07UniProtVAR_078261A103VCALM3_HUMANDisease  ---AA102V
08UniProtVAR_078542D130GCALM1_HUMANDisease (LQT14)730882252AD129G
09UniProtVAR_078544D130GCALM2_HUMANDisease (LQT15)730882252AD129G
10UniProtVAR_078262D130VCALM2_HUMANDisease (LQT15)  ---AD129V
11UniProtVAR_073279D132ECALM2_HUMANDisease (LQT15)398124648AD131E
12UniProtVAR_073280D134HCALM2_HUMANDisease (LQT15)398124650AD133H
13UniProtVAR_073281Q136PCALM2_HUMANDisease (LQT15)398124649AQ135P
14UniProtVAR_078263E141GCALM1_HUMANDisease (LQT14)  ---AE140G
15UniProtVAR_073282F142LCALM1_HUMANDisease (LQT14)11551462AF141L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM1_HUMAN8-43
44-79
81-116
117-149
  4A:7-42
A:43-76
A:81-115
A:116-146
CALM2_HUMAN8-43
44-79
81-116
117-149
  4A:7-42
A:43-76
A:81-115
A:116-146
CALM3_HUMAN8-43
44-79
81-116
117-149
  4A:7-42
A:43-76
A:81-115
A:116-146
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM1_HUMAN21-33
57-69
94-106
130-142
  4A:20-32
A:56-68
A:93-105
A:129-141
CALM2_HUMAN21-33
57-69
94-106
130-142
  4A:20-32
A:56-68
A:93-105
A:129-141
CALM3_HUMAN21-33
57-69
94-106
130-142
  4A:20-32
A:56-68
A:93-105
A:129-141
Biological Unit 1 (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM1_HUMAN8-43
44-79
81-116
117-149
  4A:7-42
A:43-76
A:81-115
A:116-146
CALM2_HUMAN8-43
44-79
81-116
117-149
  4A:7-42
A:43-76
A:81-115
A:116-146
CALM3_HUMAN8-43
44-79
81-116
117-149
  4A:7-42
A:43-76
A:81-115
A:116-146
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM1_HUMAN21-33
57-69
94-106
130-142
  4A:20-32
A:56-68
A:93-105
A:129-141
CALM2_HUMAN21-33
57-69
94-106
130-142
  4A:20-32
A:56-68
A:93-105
A:129-141
CALM3_HUMAN21-33
57-69
94-106
130-142
  4A:20-32
A:56-68
A:93-105
A:129-141
Biological Unit 2 (2, 48)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM1_HUMAN8-43
44-79
81-116
117-149
  8A:7-42
A:43-76
A:81-115
A:116-146
CALM2_HUMAN8-43
44-79
81-116
117-149
  8A:7-42
A:43-76
A:81-115
A:116-146
CALM3_HUMAN8-43
44-79
81-116
117-149
  8A:7-42
A:43-76
A:81-115
A:116-146
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM1_HUMAN21-33
57-69
94-106
130-142
  8A:20-32
A:56-68
A:93-105
A:129-141
CALM2_HUMAN21-33
57-69
94-106
130-142
  8A:20-32
A:56-68
A:93-105
A:129-141
CALM3_HUMAN21-33
57-69
94-106
130-142
  8A:20-32
A:56-68
A:93-105
A:129-141

(-) Exons   (0, 0)

(no "Exon" information available for 1IWQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:139
 aligned with CALM1_HUMAN | P0DP23 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:143
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144   
          CALM1_HUMAN     5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
               SCOP domains d1iwqa_ A: Calmodulin                                                                                                                           SCOP domains
               CATH domains -1iwqA01 A:5-81 EF-hand                                                       1iwqA02 A:82-145 EF-hand                                        - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhh----hhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------I-----------------------------------L-----V-I----V--------------------------G-E-H-P----GL----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------S-------------------------------G----------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------------------------S-------------------------------V----------------- SAPs(SNPs) (3)
                PROSITE (1) ---EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-76             -EF_HAND_2  PDB: A:81-115            EF_HAND_2  PDB: A:116-146       PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ----- PROSITE (4)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iwq A   4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 146
                                    13        23        33        43        53        63        73  |    |83        93       103       113       123       133       143   
                                                                                                   76   81                                                                 

Chain A from PDB  Type:PROTEIN  Length:139
 aligned with CALM2_HUMAN | P0DP24 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:143
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144   
          CALM2_HUMAN     5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
               SCOP domains d1iwqa_ A: Calmodulin                                                                                                                           SCOP domains
               CATH domains -1iwqA01 A:5-81 EF-hand                                                       1iwqA02 A:82-145 EF-hand                                        - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhh----hhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------I-----------------------------------L-----V-I----V--------------------------G-E-H-P----GL----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------S-------------------------------G----------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------------------------S-------------------------------V----------------- SAPs(SNPs) (3)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-76             -EF_HAND_2  PDB: A:81-115            EF_HAND_2  PDB: A:116-146       PROSITE (3)
                PROSITE (4) ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ----- PROSITE (6)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iwq A   4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 146
                                    13        23        33        43        53        63        73  |    |83        93       103       113       123       133       143   
                                                                                                   76   81                                                                 

Chain A from PDB  Type:PROTEIN  Length:139
 aligned with CALM3_HUMAN | P0DP25 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:143
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144   
          CALM3_HUMAN     5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
               SCOP domains d1iwqa_ A: Calmodulin                                                                                                                           SCOP domains
               CATH domains -1iwqA01 A:5-81 EF-hand                                                       1iwqA02 A:82-145 EF-hand                                        - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhh----hhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------I-----------------------------------L-----V-I----V--------------------------G-E-H-P----GL----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------S-------------------------------G----------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------------------------S-------------------------------V----------------- SAPs(SNPs) (3)
                PROSITE (2) ---EF_HAND_2  PDB: A:7-42 UniProt: 8-43EF_HAND_2  PDB: A:43-76             -EF_HAND_2  PDB: A:81-115            EF_HAND_2  PDB: A:116-146       PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ----- PROSITE (5)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1iwq A   4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 146
                                    13        23        33        43        53        63        73  |    |83        93       103       113       123       133       143   
                                                                                                   76   81                                                                 

Chain B from PDB  Type:PROTEIN  Length:18
 aligned with MARCS_MOUSE | P26645 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:18
                                   157        
          MARCS_MOUSE   148 KKRFSFKKSFKLSGFSFK 165
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ........hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                 1iwq B 191 KKRFSFKKSFKLSGFSFK 208
                                   200        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1IWQ)

(-) Gene Ontology  (109, 117)

Asymmetric Unit(hide GO term definitions)
Chain A   (CALM1_HUMAN | P0DP23)

Chain A   (CALM3_HUMAN | P0DP25)

Chain A   (CALM2_HUMAN | P0DP24)

Chain B   (MARCS_MOUSE | P26645)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0001786    phosphatidylserine binding    Interacting selectively and non-covalently with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine.
    GO:0005543    phospholipid binding    Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005080    protein kinase C binding    Interacting selectively and non-covalently with protein kinase C.
biological process
    GO:0007015    actin filament organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.
    GO:0031584    activation of phospholipase D activity    Any process that initiates the activity of inactive phospholipase D.
    GO:0007420    brain development    The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
    GO:0031589    cell-substrate adhesion    The attachment of a cell to the underlying substrate via adhesion molecules.
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:0061003    positive regulation of dendritic spine morphogenesis    Any process that increases the rate, frequency, or extent of dendritic spine morphogenesis, the process in which the anatomical structures of a dendritic spine are generated and organized. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission.
    GO:2001275    positive regulation of glucose import in response to insulin stimulus    Any process that activates or increases the frequency, rate or extent of glucose import in response to insulin stimulus.
    GO:0010976    positive regulation of neuron projection development    Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:1900020    positive regulation of protein kinase C activity    Any process that activates or increases the frequency, rate or extent of protein kinase C activity.
    GO:0003229    ventricular cardiac muscle tissue development    The process whose specific outcome is the progression of ventricular cardiac muscle over time, from its formation to the mature structure.
cellular component
    GO:0043679    axon terminus    Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal button is a specialized region of it.
    GO:0032059    bleb    A cell extension caused by localized decoupling of the cytoskeleton from the plasma membrane and characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusion. Blebs are formed during apoptosis and other cellular processes, including cell locomotion, cell division, and as a result of physical or chemical stresses.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0005813    centrosome    A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
    GO:0033391    chromatoid body    A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182).
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0044307    dendritic branch    A dendrite arising from another dendrite.
    GO:0043197    dendritic spine    A small, membranous protrusion from a dendrite that forms a postsynaptic compartment - typically receiving input from a single presynapse. They function as partially isolated biochemical and an electrical compartments. Spine morphology is variable including "thin", "stubby", "mushroom", and "branched", with a continuum of intermediate morphologies. They typically terminate in a bulb shape, linked to the dendritic shaft by a restriction. Spine remodeling is though to be involved in synaptic plasticity.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0042585    germinal vesicle    The enlarged, fluid filled nucleus of a primary oocyte, the development of which is suspended in prophase I of the first meiotic division between embryohood and sexual maturity.
    GO:0030426    growth cone    The migrating motile tip of a growing nerve cell axon or dendrite.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0001520    outer dense fiber    A supramolecular fiber found in the flagella of mammalian sperm that surrounds the nine microtubule doublets. These dense fibers are stiff and noncontractile. In human, they consist of about 10 major and at least 15 minor proteins, where all major proteins are ODF1, ODF2 or ODF2-related proteins.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM1_HUMAN | P0DP231aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1wrz 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2i08 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2l7l 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2x0g 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3evv 3ewt 3ewv 3g43 3hr4 3j41 3o77 3o78 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dow 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv
        CALM2_HUMAN | P0DP241aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2x0g 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3ewt 3ewv 3g43 3hr4 3j41 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dow 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv
        CALM3_HUMAN | P0DP251aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2x0g 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3ewt 3ewv 3g43 3hr4 3j41 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dow 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1IWQ)